Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:86496075-87109027

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr12805 1 86503403 to 86503416 13 - TSS region transcription start site region 12805
Tssr12806 1 86503426 to 86503448 22 - TSS region transcription start site region 12806
Tssr7761 1 86503579 to 86503589 10 + TSS region transcription start site region 7761
Tssr7762 1 86503601 to 86503617 16 + TSS region transcription start site region 7762
Tssr7763 1 86503629 to 86503638 9 + TSS region transcription start site region 7763
Cpgi510 1 86503711 to 86504729 1018 CpG island CpG island 510
Tssr12807 1 86504055 to 86504080 25 - TSS region transcription start site region 12807
Tssr12808 1 86504082 to 86504101 19 - TSS region transcription start site region 12808
Tssr144 1 86504391 to 86504410 19 - TSS region transcription start site region 144
Tssr7764 1 86504511 to 86504542 31 + TSS region transcription start site region 7764
Tssr7765 1 86504611 to 86504626 15 + TSS region transcription start site region 7765
Tssr7766 1 86522665 to 86522683 18 + TSS region transcription start site region 7766
Tssr7767 1 86522709 to 86522727 18 + TSS region transcription start site region 7767
Cpgi511 1 86524752 to 86528946 4194 CpG island CpG island 511
Tssr12809 1 86525276 to 86525310 34 - TSS region transcription start site region 12809
Tssr7768 1 86525490 to 86525525 35 + TSS region transcription start site region 7768
Tssr12810 1 86526205 to 86526247 42 - TSS region transcription start site region 12810
Tssr12811 1 86526548 to 86526559 11 - TSS region transcription start site region 12811
Tssr7769 1 86526688 to 86526722 34 + TSS region transcription start site region 7769
Ptma 1 86526736 to 86530698 3962 + protein coding gene prothymosin alpha
Tssr7770 1 86526789 to 86526806 17 + TSS region transcription start site region 7770
Tssr7771 1 86526823 to 86526859 36 + TSS region transcription start site region 7771
Tssr7772 1 86528862 to 86528873 11 + TSS region transcription start site region 7772
Pde6d 1 86542994 to 86582629 39635 - protein coding gene phosphodiesterase 6D, cGMP-specific, rod, delta
Gm37152 1 86580058 to 86581232 1174 + unclassified gene predicted gene, 37152
Cpgi512 1 86582046 to 86582861 815 CpG island CpG island 512
Tssr12812 1 86582500 to 86582565 65 - TSS region transcription start site region 12812
Tssr12813 1 86582776 to 86582790 14 - TSS region transcription start site region 12813
Cops7b 1 86582892 to 86606500 23608 + protein coding gene COP9 signalosome subunit 7B
Tssr7773 1 86582893 to 86582930 37 + TSS region transcription start site region 7773
Cpgi513 1 86586958 to 86587659 701 CpG island CpG island 513
Tssr7774 1 86587125 to 86587156 31 + TSS region transcription start site region 7774
Gm41908 1 86627068 to 86644243 17175 + lncRNA gene predicted gene, 41908
Gm22955 1 86637552 to 86637608 56 - miRNA gene predicted gene, 22955
Gm37022 1 86638201 to 86640454 2253 + unclassified gene predicted gene, 37022
Nppc 1 86666293 to 86670573 4280 - protein coding gene natriuretic peptide type C
Tssr12814 1 86666689 to 86666694 5 - TSS region transcription start site region 12814
Cpgi514 1 86669474 to 86671029 1555 CpG island CpG island 514
Tssr12815 1 86670565 to 86670579 14 - TSS region transcription start site region 12815
Cpgi515 1 86703251 to 86704241 990 CpG island CpG island 515
Tssr7775 1 86703788 to 86703843 55 + TSS region transcription start site region 7775
Dis3l2 1 86703808 to 87050095 346287 + protein coding gene DIS3 like 3'-5' exoribonuclease 2
Gm29097 1 86764944 to 86765365 421 - pseudogene predicted gene 29097
Gm29055 1 86774819 to 86776528 1709 + sense intronic lncRNA gene predicted gene 29055
Tssr7776 1 86789261 to 86789265 4 + TSS region transcription start site region 7776
Gm37485 1 86801075 to 86804027 2952 + unclassified gene predicted gene, 37485
Gm38142 1 86826101 to 86829655 3554 + unclassified gene predicted gene, 38142
Gm38010 1 86834995 to 86837778 2783 + unclassified gene predicted gene, 38010
Gm37541 1 86874350 to 86876664 2314 + unclassified gene predicted gene, 37541
Gm38021 1 86893573 to 86895132 1559 + unclassified gene predicted gene, 38021
Gm6136 1 86908793 to 86909683 890 - pseudogene predicted pseudogene 6136
Tssr12816 1 86909703 to 86909707 4 - TSS region transcription start site region 12816
Gm37967 1 86917992 to 86920656 2664 + unclassified gene predicted gene, 37967
Gm41909 1 86922934 to 86930742 7808 - lncRNA gene predicted gene, 41909
Gm37017 1 86988270 to 86989016 746 + unclassified gene predicted gene, 37017
Tssr7777 1 87020504 to 87020508 4 + TSS region transcription start site region 7777
Gm37447 1 87036723 to 87039650 2927 + unclassified gene predicted gene, 37447
Gm28375 1 87056505 to 87067441 10936 - antisense lncRNA gene predicted gene 28375
Tssr7778 1 87068001 to 87068018 17 + TSS region transcription start site region 7778
Akp-ps1 1 87068030 to 87071005 2975 + pseudogene alkaline phosphatase pseudogene 1
Gm41910 1 87071419 to 87072091 672 + lncRNA gene predicted gene, 41910
Gm29371 1 87080171 to 87096418 16247 + lincRNA gene predicted gene 29371
Alppl2 1 87086694 to 87089928 3234 - protein coding gene alkaline phosphatase, placental-like 2
Cpgi516 1 87087055 to 87087505 450 CpG island CpG island 516
Alpi 1 87098002 to 87101606 3604 - protein coding gene alkaline phosphatase, intestinal
Tssr12817 1 87098098 to 87098116 18 - TSS region transcription start site region 12817
Tssr12818 1 87098539 to 87098558 19 - TSS region transcription start site region 12818
Tssr12819 1 87098559 to 87098599 40 - TSS region transcription start site region 12819
Cpgi517 1 87098597 to 87099086 489 CpG island CpG island 517
Tssr12820 1 87098801 to 87098811 10 - TSS region transcription start site region 12820
Tssr12821 1 87098877 to 87098904 27 - TSS region transcription start site region 12821
Tssr7779 1 87099076 to 87099100 24 + TSS region transcription start site region 7779
Tssr12822 1 87099135 to 87099144 9 - TSS region transcription start site region 12822
Tssr12823 1 87099419 to 87099428 9 - TSS region transcription start site region 12823
Tssr12824 1 87099445 to 87099454 9 - TSS region transcription start site region 12824
Tssr12825 1 87099525 to 87099535 10 - TSS region transcription start site region 12825
Tssr12826 1 87099549 to 87099561 12 - TSS region transcription start site region 12826
Tssr7780 1 87099700 to 87099721 21 + TSS region transcription start site region 7780
Tssr12827 1 87099734 to 87099747 13 - TSS region transcription start site region 12827
Tssr12828 1 87100181 to 87100192 11 - TSS region transcription start site region 12828
Tssr12829 1 87100316 to 87100354 38 - TSS region transcription start site region 12829
Tssr12830 1 87100562 to 87100571 9 - TSS region transcription start site region 12830
Tssr12831 1 87100579 to 87100592 13 - TSS region transcription start site region 12831
Tssr12832 1 87100598 to 87100612 14 - TSS region transcription start site region 12832
Tssr12833 1 87101561 to 87101566 5 - TSS region transcription start site region 12833
Tssr12834 1 87101590 to 87101617 27 - TSS region transcription start site region 12834
Tssr12835 1 87101630 to 87101636 6 - TSS region transcription start site region 12835
Tssr12836 1 87101715 to 87101719 4 - TSS region transcription start site region 12836
Tssr12837 1 87102236 to 87102252 16 - TSS region transcription start site region 12837