Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:86441075-87164027

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175 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm32700 1 86430011 to 86441525 11514 - lncRNA gene predicted gene, 32700
Cpgi507 1 86441981 to 86443265 1284 CpG island CpG island 507
Tssr12796 1 86442480 to 86442491 11 - TSS region transcription start site region 12796
Tssr12797 1 86442538 to 86442554 16 - TSS region transcription start site region 12797
Gm32758 1 86456652 to 86465317 8665 - lncRNA gene predicted gene, 32758
Gm41907 1 86465724 to 86473126 7402 - lncRNA gene predicted gene, 41907
Tssr12798 1 86467421 to 86467439 18 - TSS region transcription start site region 12798
Tssr12799 1 86467466 to 86467492 26 - TSS region transcription start site region 12799
Tssr7756 1 86470757 to 86470771 14 + TSS region transcription start site region 7756
Cpgi508 1 86472218 to 86472466 248 CpG island CpG island 508
Tssr7757 1 86473527 to 86473568 41 + TSS region transcription start site region 7757
Rpl30-ps6 1 86473659 to 86474006 347 + pseudogene ribosomal protein L30, pseudogene 6
Cpgi509 1 86487167 to 86488177 1010 CpG island CpG island 509
Tssr12800 1 86487331 to 86487369 38 - TSS region transcription start site region 12800
Tssr12801 1 86487376 to 86487396 20 - TSS region transcription start site region 12801
Tssr12802 1 86487405 to 86487450 45 - TSS region transcription start site region 12802
Tssr7758 1 86487746 to 86487770 24 + TSS region transcription start site region 7758
Tssr7759 1 86487771 to 86487831 60 + TSS region transcription start site region 7759
Tssr12803 1 86488848 to 86488859 11 - TSS region transcription start site region 12803
Tssr7760 1 86489045 to 86489059 14 + TSS region transcription start site region 7760
Tssr12804 1 86492219 to 86492251 32 - TSS region transcription start site region 12804
Tssr12805 1 86503403 to 86503416 13 - TSS region transcription start site region 12805
Tssr12806 1 86503426 to 86503448 22 - TSS region transcription start site region 12806
Tssr7761 1 86503579 to 86503589 10 + TSS region transcription start site region 7761
Tssr7762 1 86503601 to 86503617 16 + TSS region transcription start site region 7762
Tssr7763 1 86503629 to 86503638 9 + TSS region transcription start site region 7763
Cpgi510 1 86503711 to 86504729 1018 CpG island CpG island 510
Tssr12807 1 86504055 to 86504080 25 - TSS region transcription start site region 12807
Tssr12808 1 86504082 to 86504101 19 - TSS region transcription start site region 12808
Tssr144 1 86504391 to 86504410 19 - TSS region transcription start site region 144
Tssr7764 1 86504511 to 86504542 31 + TSS region transcription start site region 7764
Tssr7765 1 86504611 to 86504626 15 + TSS region transcription start site region 7765
Tssr7766 1 86522665 to 86522683 18 + TSS region transcription start site region 7766
Tssr7767 1 86522709 to 86522727 18 + TSS region transcription start site region 7767
Cpgi511 1 86524752 to 86528946 4194 CpG island CpG island 511
Tssr12809 1 86525276 to 86525310 34 - TSS region transcription start site region 12809
Tssr7768 1 86525490 to 86525525 35 + TSS region transcription start site region 7768
Tssr12810 1 86526205 to 86526247 42 - TSS region transcription start site region 12810
Tssr12811 1 86526548 to 86526559 11 - TSS region transcription start site region 12811
Tssr7769 1 86526688 to 86526722 34 + TSS region transcription start site region 7769
Ptma 1 86526736 to 86530698 3962 + protein coding gene prothymosin alpha
Tssr7770 1 86526789 to 86526806 17 + TSS region transcription start site region 7770
Tssr7771 1 86526823 to 86526859 36 + TSS region transcription start site region 7771
Tssr7772 1 86528862 to 86528873 11 + TSS region transcription start site region 7772
Pde6d 1 86542994 to 86582629 39635 - protein coding gene phosphodiesterase 6D, cGMP-specific, rod, delta
Gm37152 1 86580058 to 86581232 1174 + unclassified gene predicted gene, 37152
Cpgi512 1 86582046 to 86582861 815 CpG island CpG island 512
Tssr12812 1 86582500 to 86582565 65 - TSS region transcription start site region 12812
Tssr12813 1 86582776 to 86582790 14 - TSS region transcription start site region 12813
Cops7b 1 86582892 to 86606500 23608 + protein coding gene COP9 signalosome subunit 7B
Tssr7773 1 86582893 to 86582930 37 + TSS region transcription start site region 7773
Cpgi513 1 86586958 to 86587659 701 CpG island CpG island 513
Tssr7774 1 86587125 to 86587156 31 + TSS region transcription start site region 7774
Gm41908 1 86627068 to 86644243 17175 + lncRNA gene predicted gene, 41908
Gm22955 1 86637552 to 86637608 56 - miRNA gene predicted gene, 22955
Gm37022 1 86638201 to 86640454 2253 + unclassified gene predicted gene, 37022
Nppc 1 86666293 to 86670573 4280 - protein coding gene natriuretic peptide type C
Tssr12814 1 86666689 to 86666694 5 - TSS region transcription start site region 12814
Cpgi514 1 86669474 to 86671029 1555 CpG island CpG island 514
Tssr12815 1 86670565 to 86670579 14 - TSS region transcription start site region 12815
Cpgi515 1 86703251 to 86704241 990 CpG island CpG island 515
Tssr7775 1 86703788 to 86703843 55 + TSS region transcription start site region 7775
Dis3l2 1 86703808 to 87050095 346287 + protein coding gene DIS3 like 3'-5' exoribonuclease 2
Gm29097 1 86764944 to 86765365 421 - pseudogene predicted gene 29097
Gm29055 1 86774819 to 86776528 1709 + sense intronic lncRNA gene predicted gene 29055
Tssr7776 1 86789261 to 86789265 4 + TSS region transcription start site region 7776
Gm37485 1 86801075 to 86804027 2952 + unclassified gene predicted gene, 37485
Gm38142 1 86826101 to 86829655 3554 + unclassified gene predicted gene, 38142
Gm38010 1 86834995 to 86837778 2783 + unclassified gene predicted gene, 38010
Gm37541 1 86874350 to 86876664 2314 + unclassified gene predicted gene, 37541
Gm38021 1 86893573 to 86895132 1559 + unclassified gene predicted gene, 38021
Gm6136 1 86908793 to 86909683 890 - pseudogene predicted pseudogene 6136
Tssr12816 1 86909703 to 86909707 4 - TSS region transcription start site region 12816
Gm37967 1 86917992 to 86920656 2664 + unclassified gene predicted gene, 37967
Gm41909 1 86922934 to 86930742 7808 - lncRNA gene predicted gene, 41909
Gm37017 1 86988270 to 86989016 746 + unclassified gene predicted gene, 37017
Tssr7777 1 87020504 to 87020508 4 + TSS region transcription start site region 7777
Gm37447 1 87036723 to 87039650 2927 + unclassified gene predicted gene, 37447
Gm28375 1 87056505 to 87067441 10936 - antisense lncRNA gene predicted gene 28375
Tssr7778 1 87068001 to 87068018 17 + TSS region transcription start site region 7778
Akp-ps1 1 87068030 to 87071005 2975 + pseudogene alkaline phosphatase pseudogene 1
Gm41910 1 87071419 to 87072091 672 + lncRNA gene predicted gene, 41910
Gm29371 1 87080171 to 87096418 16247 + lincRNA gene predicted gene 29371
Alppl2 1 87086694 to 87089928 3234 - protein coding gene alkaline phosphatase, placental-like 2
Cpgi516 1 87087055 to 87087505 450 CpG island CpG island 516
Alpi 1 87098002 to 87101606 3604 - protein coding gene alkaline phosphatase, intestinal
Tssr12817 1 87098098 to 87098116 18 - TSS region transcription start site region 12817
Tssr12818 1 87098539 to 87098558 19 - TSS region transcription start site region 12818
Tssr12819 1 87098559 to 87098599 40 - TSS region transcription start site region 12819
Cpgi517 1 87098597 to 87099086 489 CpG island CpG island 517
Tssr12820 1 87098801 to 87098811 10 - TSS region transcription start site region 12820
Tssr12821 1 87098877 to 87098904 27 - TSS region transcription start site region 12821
Tssr7779 1 87099076 to 87099100 24 + TSS region transcription start site region 7779
Tssr12822 1 87099135 to 87099144 9 - TSS region transcription start site region 12822
Tssr12823 1 87099419 to 87099428 9 - TSS region transcription start site region 12823
Tssr12824 1 87099445 to 87099454 9 - TSS region transcription start site region 12824
Tssr12825 1 87099525 to 87099535 10 - TSS region transcription start site region 12825
Tssr12826 1 87099549 to 87099561 12 - TSS region transcription start site region 12826
Tssr7780 1 87099700 to 87099721 21 + TSS region transcription start site region 7780
Tssr12827 1 87099734 to 87099747 13 - TSS region transcription start site region 12827
Tssr12828 1 87100181 to 87100192 11 - TSS region transcription start site region 12828
Tssr12829 1 87100316 to 87100354 38 - TSS region transcription start site region 12829
Tssr12830 1 87100562 to 87100571 9 - TSS region transcription start site region 12830
Tssr12831 1 87100579 to 87100592 13 - TSS region transcription start site region 12831
Tssr12832 1 87100598 to 87100612 14 - TSS region transcription start site region 12832
Tssr12833 1 87101561 to 87101566 5 - TSS region transcription start site region 12833
Tssr12834 1 87101590 to 87101617 27 - TSS region transcription start site region 12834
Tssr12835 1 87101630 to 87101636 6 - TSS region transcription start site region 12835
Tssr12836 1 87101715 to 87101719 4 - TSS region transcription start site region 12836
Tssr12837 1 87102236 to 87102252 16 - TSS region transcription start site region 12837
Gm29372 1 87116321 to 87117158 837 - pseudogene predicted gene 29372
Tssr7781 1 87124946 to 87124960 14 + TSS region transcription start site region 7781
Akp3 1 87125008 to 87127912 2904 + protein coding gene alkaline phosphatase 3, intestine, not Mn requiring
Tssr7782 1 87125396 to 87125403 7 + TSS region transcription start site region 7782
Tssr7783 1 87125688 to 87125696 8 + TSS region transcription start site region 7783
Tssr12838 1 87125718 to 87125730 12 - TSS region transcription start site region 12838
Tssr12839 1 87125733 to 87125740 7 - TSS region transcription start site region 12839
Tssr12840 1 87125746 to 87125749 3 - TSS region transcription start site region 12840
Tssr7784 1 87125931 to 87125938 7 + TSS region transcription start site region 7784
Tssr7785 1 87125967 to 87125977 10 + TSS region transcription start site region 7785
Tssr7786 1 87125997 to 87126004 7 + TSS region transcription start site region 7786
Tssr7787 1 87126323 to 87126333 10 + TSS region transcription start site region 7787
Tssr145 1 87126344 to 87126352 8 + TSS region transcription start site region 145
Tssr7788 1 87126725 to 87126731 6 + TSS region transcription start site region 7788
Tssr7789 1 87126755 to 87126765 10 + TSS region transcription start site region 7789
Tssr12841 1 87126798 to 87126808 10 - TSS region transcription start site region 12841
Tssr7790 1 87126809 to 87126818 9 + TSS region transcription start site region 7790
Tssr7791 1 87126933 to 87126945 12 + TSS region transcription start site region 7791
Tssr7792 1 87126961 to 87126971 10 + TSS region transcription start site region 7792
Tssr7793 1 87126974 to 87126982 8 + TSS region transcription start site region 7793
Tssr7794 1 87126991 to 87126995 4 + TSS region transcription start site region 7794
Tssr7795 1 87127017 to 87127027 10 + TSS region transcription start site region 7795
Tssr7796 1 87127040 to 87127050 10 + TSS region transcription start site region 7796
Tssr7797 1 87127057 to 87127063 6 + TSS region transcription start site region 7797
Tssr7798 1 87127094 to 87127101 7 + TSS region transcription start site region 7798
Cpgi518 1 87127110 to 87127957 847 CpG island CpG island 518
Tssr12842 1 87127124 to 87127128 4 - TSS region transcription start site region 12842
Tssr7799 1 87127330 to 87127338 8 + TSS region transcription start site region 7799
Tssr7800 1 87127349 to 87127374 25 + TSS region transcription start site region 7800
Tssr12843 1 87127386 to 87127391 5 - TSS region transcription start site region 12843
Tssr7801 1 87127408 to 87127419 11 + TSS region transcription start site region 7801
Tssr7802 1 87127535 to 87127541 6 + TSS region transcription start site region 7802
Tssr12844 1 87127577 to 87127596 19 - TSS region transcription start site region 12844
Tssr146 1 87127588 to 87127594 6 + TSS region transcription start site region 146
Tssr7803 1 87127596 to 87127601 5 + TSS region transcription start site region 7803
Tssr7804 1 87127620 to 87127626 6 + TSS region transcription start site region 7804
Tssr7805 1 87127694 to 87127695 1 + TSS region transcription start site region 7805
Tssr7806 1 87127708 to 87127711 3 + TSS region transcription start site region 7806
Tssr7807 1 87127728 to 87127740 12 + TSS region transcription start site region 7807
Tssr12845 1 87127748 to 87127792 44 - TSS region transcription start site region 12845
Tssr12846 1 87127809 to 87127833 24 - TSS region transcription start site region 12846
Tssr7808 1 87127833 to 87127836 3 + TSS region transcription start site region 7808
Tssr7809 1 87127903 to 87127913 10 + TSS region transcription start site region 7809
Tssr7810 1 87127928 to 87127953 25 + TSS region transcription start site region 7810
Tssr147 1 87127940 to 87127945 5 - TSS region transcription start site region 147
Tssr7811 1 87127957 to 87127974 17 + TSS region transcription start site region 7811
Tssr7812 1 87128007 to 87128012 5 + TSS region transcription start site region 7812
Tssr7813 1 87128048 to 87128051 3 + TSS region transcription start site region 7813
Tssr7814 1 87128078 to 87128092 14 + TSS region transcription start site region 7814
Tssr7815 1 87128146 to 87128162 16 + TSS region transcription start site region 7815
Tssr7816 1 87128186 to 87128189 3 + TSS region transcription start site region 7816
Tssr7817 1 87128198 to 87128207 9 + TSS region transcription start site region 7817
Tssr12847 1 87128280 to 87128302 22 - TSS region transcription start site region 12847
Tssr12848 1 87128349 to 87128365 16 - TSS region transcription start site region 12848
Tssr12849 1 87128368 to 87128378 10 - TSS region transcription start site region 12849
Tssr7818 1 87128373 to 87128388 15 + TSS region transcription start site region 7818
Tssr148 1 87128602 to 87128605 3 + TSS region transcription start site region 148
Tssr7819 1 87128689 to 87128697 8 + TSS region transcription start site region 7819
Gm29374 1 87142874 to 87146983 4109 - lincRNA gene predicted gene 29374
Ecel1 1 87147655 to 87156521 8866 - protein coding gene endothelin converting enzyme-like 1
Cpgi519 1 87149383 to 87149562 179 CpG island CpG island 519
Gm33292 1 87150916 to 87172246 21330 + lncRNA gene predicted gene, 33292
Cpgi520 1 87153449 to 87155124 1675 CpG island CpG island 520
Cpgi521 1 87155402 to 87156593 1191 CpG island CpG island 521
Tssr12850 1 87156127 to 87156145 18 - TSS region transcription start site region 12850