Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:86428788-86978843

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm32700 1 86430011 to 86441525 11514 - lncRNA gene predicted gene, 32700
Tssr143 1 86433973 to 86433978 5 + TSS region transcription start site region 143
Cpgi506 1 86434217 to 86434944 727 CpG island CpG island 506
Tssr7755 1 86434604 to 86434656 52 + TSS region transcription start site region 7755
4930401B06Rik 1 86434694 to 86436035 1341 unclassified gene RIKEN cDNA 4930401B06 gene
Tssr12795 1 86438045 to 86438057 12 - TSS region transcription start site region 12795
Cpgi507 1 86441981 to 86443265 1284 CpG island CpG island 507
Tssr12796 1 86442480 to 86442491 11 - TSS region transcription start site region 12796
Tssr12797 1 86442538 to 86442554 16 - TSS region transcription start site region 12797
Gm32758 1 86456652 to 86465317 8665 - lncRNA gene predicted gene, 32758
Gm41907 1 86465724 to 86473126 7402 - lncRNA gene predicted gene, 41907
Tssr12798 1 86467421 to 86467439 18 - TSS region transcription start site region 12798
Tssr12799 1 86467466 to 86467492 26 - TSS region transcription start site region 12799
Tssr7756 1 86470757 to 86470771 14 + TSS region transcription start site region 7756
Cpgi508 1 86472218 to 86472466 248 CpG island CpG island 508
Tssr7757 1 86473527 to 86473568 41 + TSS region transcription start site region 7757
Rpl30-ps6 1 86473659 to 86474006 347 + pseudogene ribosomal protein L30, pseudogene 6
Cpgi509 1 86487167 to 86488177 1010 CpG island CpG island 509
Tssr12800 1 86487331 to 86487369 38 - TSS region transcription start site region 12800
Tssr12801 1 86487376 to 86487396 20 - TSS region transcription start site region 12801
Tssr12802 1 86487405 to 86487450 45 - TSS region transcription start site region 12802
Tssr7758 1 86487746 to 86487770 24 + TSS region transcription start site region 7758
Tssr7759 1 86487771 to 86487831 60 + TSS region transcription start site region 7759
Tssr12803 1 86488848 to 86488859 11 - TSS region transcription start site region 12803
Tssr7760 1 86489045 to 86489059 14 + TSS region transcription start site region 7760
Tssr12804 1 86492219 to 86492251 32 - TSS region transcription start site region 12804
Tssr12805 1 86503403 to 86503416 13 - TSS region transcription start site region 12805
Tssr12806 1 86503426 to 86503448 22 - TSS region transcription start site region 12806
Tssr7761 1 86503579 to 86503589 10 + TSS region transcription start site region 7761
Tssr7762 1 86503601 to 86503617 16 + TSS region transcription start site region 7762
Tssr7763 1 86503629 to 86503638 9 + TSS region transcription start site region 7763
Cpgi510 1 86503711 to 86504729 1018 CpG island CpG island 510
Tssr12807 1 86504055 to 86504080 25 - TSS region transcription start site region 12807
Tssr12808 1 86504082 to 86504101 19 - TSS region transcription start site region 12808
Tssr144 1 86504391 to 86504410 19 - TSS region transcription start site region 144
Tssr7764 1 86504511 to 86504542 31 + TSS region transcription start site region 7764
Tssr7765 1 86504611 to 86504626 15 + TSS region transcription start site region 7765
Tssr7766 1 86522665 to 86522683 18 + TSS region transcription start site region 7766
Tssr7767 1 86522709 to 86522727 18 + TSS region transcription start site region 7767
Cpgi511 1 86524752 to 86528946 4194 CpG island CpG island 511
Tssr12809 1 86525276 to 86525310 34 - TSS region transcription start site region 12809
Tssr7768 1 86525490 to 86525525 35 + TSS region transcription start site region 7768
Tssr12810 1 86526205 to 86526247 42 - TSS region transcription start site region 12810
Tssr12811 1 86526548 to 86526559 11 - TSS region transcription start site region 12811
Tssr7769 1 86526688 to 86526722 34 + TSS region transcription start site region 7769
Ptma 1 86526736 to 86530698 3962 + protein coding gene prothymosin alpha
Tssr7770 1 86526789 to 86526806 17 + TSS region transcription start site region 7770
Tssr7771 1 86526823 to 86526859 36 + TSS region transcription start site region 7771
Tssr7772 1 86528862 to 86528873 11 + TSS region transcription start site region 7772
Pde6d 1 86542994 to 86582629 39635 - protein coding gene phosphodiesterase 6D, cGMP-specific, rod, delta
Gm37152 1 86580058 to 86581232 1174 + unclassified gene predicted gene, 37152
Cpgi512 1 86582046 to 86582861 815 CpG island CpG island 512
Tssr12812 1 86582500 to 86582565 65 - TSS region transcription start site region 12812
Tssr12813 1 86582776 to 86582790 14 - TSS region transcription start site region 12813
Cops7b 1 86582892 to 86606500 23608 + protein coding gene COP9 signalosome subunit 7B
Tssr7773 1 86582893 to 86582930 37 + TSS region transcription start site region 7773
Cpgi513 1 86586958 to 86587659 701 CpG island CpG island 513
Tssr7774 1 86587125 to 86587156 31 + TSS region transcription start site region 7774
Gm41908 1 86627068 to 86644243 17175 + lncRNA gene predicted gene, 41908
Gm22955 1 86637552 to 86637608 56 - miRNA gene predicted gene, 22955
Gm37022 1 86638201 to 86640454 2253 + unclassified gene predicted gene, 37022
Nppc 1 86666293 to 86670573 4280 - protein coding gene natriuretic peptide type C
Tssr12814 1 86666689 to 86666694 5 - TSS region transcription start site region 12814
Cpgi514 1 86669474 to 86671029 1555 CpG island CpG island 514
Tssr12815 1 86670565 to 86670579 14 - TSS region transcription start site region 12815
Cpgi515 1 86703251 to 86704241 990 CpG island CpG island 515
Tssr7775 1 86703788 to 86703843 55 + TSS region transcription start site region 7775
Dis3l2 1 86703808 to 87050095 346287 + protein coding gene DIS3 like 3'-5' exoribonuclease 2
Gm29097 1 86764944 to 86765365 421 - pseudogene predicted gene 29097
Gm29055 1 86774819 to 86776528 1709 + sense intronic lncRNA gene predicted gene 29055
Tssr7776 1 86789261 to 86789265 4 + TSS region transcription start site region 7776
Gm37485 1 86801075 to 86804027 2952 + unclassified gene predicted gene, 37485
Gm38142 1 86826101 to 86829655 3554 + unclassified gene predicted gene, 38142
Gm38010 1 86834995 to 86837778 2783 + unclassified gene predicted gene, 38010
Gm37541 1 86874350 to 86876664 2314 + unclassified gene predicted gene, 37541
Gm38021 1 86893573 to 86895132 1559 + unclassified gene predicted gene, 38021
Gm6136 1 86908793 to 86909683 890 - pseudogene predicted pseudogene 6136
Tssr12816 1 86909703 to 86909707 4 - TSS region transcription start site region 12816
Gm37967 1 86917992 to 86920656 2664 + unclassified gene predicted gene, 37967
Gm41909 1 86922934 to 86930742 7808 - lncRNA gene predicted gene, 41909