Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:86233597-87964086

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428 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Emo4 1 68032186 to 86307305 18275119 QTL emotionality 4
Sst1 1 81674399 to 87203100 5528701 QTL susceptibility to tuberculosis 1
Armc9 1 86154780 to 86278284 123504 + protein coding gene armadillo repeat containing 9
Tssr7734 1 86234023 to 86234035 12 + TSS region transcription start site region 7734
Gm46098 1 86245335 to 86256796 11461 - lncRNA gene predicted gene, 46098
Gm16341 1 86281042 to 86301770 20728 - antisense lncRNA gene predicted gene 16341
Tssr12764 1 86301354 to 86301366 12 - TSS region transcription start site region 12764
Tssr12765 1 86301388 to 86301404 16 - TSS region transcription start site region 12765
Cpgi501 1 86302915 to 86304178 1263 CpG island CpG island 501
Gm28626 1 86303195 to 86304059 864 - antisense lncRNA gene predicted gene 28626
B3gnt7 1 86303221 to 86307305 4084 + protein coding gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7
Tssr7735 1 86303225 to 86303239 14 + TSS region transcription start site region 7735
Tssr7736 1 86303437 to 86303446 9 + TSS region transcription start site region 7736
Tssr7737 1 86303453 to 86303482 29 + TSS region transcription start site region 7737
Tssr7738 1 86303489 to 86303503 14 + TSS region transcription start site region 7738
Tssr7739 1 86306777 to 86306802 25 + TSS region transcription start site region 7739
Tssr12766 1 86308394 to 86308403 9 - TSS region transcription start site region 12766
Tssr7740 1 86308555 to 86308578 23 + TSS region transcription start site region 7740
Tssr7741 1 86312605 to 86312609 4 + TSS region transcription start site region 7741
Cpgi502 1 86313576 to 86314073 497 CpG island CpG island 502
Gm5258 1 86323267 to 86323593 326 + pseudogene predicted gene 5258
Gm28627 1 86328039 to 86328873 834 + pseudogene predicted gene 28627
Ncl 1 86344719 to 86359400 14681 - protein coding gene nucleolin
Tssr141 1 86347639 to 86347674 35 - TSS region transcription start site region 141
Tssr12767 1 86348014 to 86348018 4 - TSS region transcription start site region 12767
Tssr7742 1 86350645 to 86350666 21 + TSS region transcription start site region 7742
Tssr7743 1 86350809 to 86350845 36 + TSS region transcription start site region 7743
Tssr12768 1 86351029 to 86351037 8 - TSS region transcription start site region 12768
Snora75 1 86351170 to 86351285 115 - snoRNA gene small nucleolar RNA, H/ACA box 75
Tssr12769 1 86351399 to 86351425 26 - TSS region transcription start site region 12769
Mir3535 1 86351981 to 86352127 146 - miRNA gene microRNA 3535
Gm24148 1 86352008 to 86352087 79 - snoRNA gene predicted gene, 24148
Tssr12770 1 86352084 to 86352088 4 - TSS region transcription start site region 12770
Tssr12771 1 86353252 to 86353283 31 - TSS region transcription start site region 12771
Tssr12772 1 86353810 to 86353859 49 - TSS region transcription start site region 12772
Tssr12773 1 86356179 to 86356198 19 - TSS region transcription start site region 12773
Snord82 1 86356260 to 86356327 67 - snoRNA gene small nucleolar RNA, C/D box 82
Tssr12774 1 86356303 to 86356328 25 - TSS region transcription start site region 12774
Tssr7744 1 86356393 to 86356427 34 + TSS region transcription start site region 7744
Tssr12775 1 86356452 to 86356464 12 - TSS region transcription start site region 12775
Tssr7745 1 86356552 to 86356633 81 + TSS region transcription start site region 7745
Tssr12776 1 86356638 to 86356651 13 - TSS region transcription start site region 12776
Tssr142 1 86357021 to 86357031 10 + TSS region transcription start site region 142
Tssr12777 1 86357031 to 86357072 41 - TSS region transcription start site region 12777
Tssr7746 1 86357038 to 86357061 23 + TSS region transcription start site region 7746
Tssr12778 1 86357073 to 86357149 76 - TSS region transcription start site region 12778
Tssr7747 1 86357073 to 86357113 40 + TSS region transcription start site region 7747
Tssr12779 1 86357150 to 86357168 18 - TSS region transcription start site region 12779
Tssr12780 1 86357183 to 86357221 38 - TSS region transcription start site region 12780
Tssr12781 1 86357227 to 86357269 42 - TSS region transcription start site region 12781
Tssr7748 1 86357231 to 86357294 63 + TSS region transcription start site region 7748
Tssr12782 1 86357313 to 86357344 31 - TSS region transcription start site region 12782
Tssr12783 1 86357364 to 86357378 14 - TSS region transcription start site region 12783
Tssr12784 1 86357381 to 86357405 24 - TSS region transcription start site region 12784
Tssr12785 1 86357420 to 86357434 14 - TSS region transcription start site region 12785
D1Mit516 1 86357856 to 86358108 252 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-516
Tssr12786 1 86358211 to 86358232 21 - TSS region transcription start site region 12786
Tssr12787 1 86358476 to 86358481 5 - TSS region transcription start site region 12787
Cpgi503 1 86358552 to 86360335 1783 CpG island CpG island 503
Tssr12788 1 86358970 to 86358997 27 - TSS region transcription start site region 12788
Tssr12789 1 86359018 to 86359046 28 - TSS region transcription start site region 12789
Tssr12790 1 86359358 to 86359381 23 - TSS region transcription start site region 12790
Tssr12791 1 86359481 to 86359486 5 - TSS region transcription start site region 12791
Tssr7749 1 86359553 to 86359590 37 + TSS region transcription start site region 7749
C130036L24Rik 1 86359574 to 86367964 8390 + lncRNA gene RIKEN cDNA C130036L24 gene
Tssr7750 1 86359638 to 86359692 54 + TSS region transcription start site region 7750
Tssr12792 1 86359951 to 86359966 15 - TSS region transcription start site region 12792
Gm45908 1 86377100 to 86378276 1176 - pseudogene predicted gene 45908
Nmur1 1 86386242 to 86389361 3119 - protein coding gene neuromedin U receptor 1
Cpgi504 1 86387561 to 86388021 460 CpG island CpG island 504
Tssr12793 1 86389369 to 86389429 60 - TSS region transcription start site region 12793
Tssr7751 1 86413928 to 86413969 41 + TSS region transcription start site region 7751
D1Mit415 1 86419252 to 86419406 154 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 415
Tssr7752 1 86424153 to 86424160 7 + TSS region transcription start site region 7752
Tssr7753 1 86424161 to 86424179 18 + TSS region transcription start site region 7753
Tssr12794 1 86426214 to 86426232 18 - TSS region transcription start site region 12794
Tssr7754 1 86426323 to 86426349 26 + TSS region transcription start site region 7754
Tex44 1 86426329 to 86428049 1720 + protein coding gene testis expressed 44
Cpgi505 1 86427744 to 86427907 163 CpG island CpG island 505
Gm32700 1 86430011 to 86441525 11514 - lncRNA gene predicted gene, 32700
Tssr143 1 86433973 to 86433978 5 + TSS region transcription start site region 143
Cpgi506 1 86434217 to 86434944 727 CpG island CpG island 506
Tssr7755 1 86434604 to 86434656 52 + TSS region transcription start site region 7755
4930401B06Rik 1 86434694 to 86436035 1341 unclassified gene RIKEN cDNA 4930401B06 gene
Tssr12795 1 86438045 to 86438057 12 - TSS region transcription start site region 12795
Cpgi507 1 86441981 to 86443265 1284 CpG island CpG island 507
Tssr12796 1 86442480 to 86442491 11 - TSS region transcription start site region 12796
Tssr12797 1 86442538 to 86442554 16 - TSS region transcription start site region 12797
Gm32758 1 86456652 to 86465317 8665 - lncRNA gene predicted gene, 32758
Gm41907 1 86465724 to 86473126 7402 - lncRNA gene predicted gene, 41907
Tssr12798 1 86467421 to 86467439 18 - TSS region transcription start site region 12798
Tssr12799 1 86467466 to 86467492 26 - TSS region transcription start site region 12799
Tssr7756 1 86470757 to 86470771 14 + TSS region transcription start site region 7756
Cpgi508 1 86472218 to 86472466 248 CpG island CpG island 508
Tssr7757 1 86473527 to 86473568 41 + TSS region transcription start site region 7757
Rpl30-ps6 1 86473659 to 86474006 347 + pseudogene ribosomal protein L30, pseudogene 6
Cpgi509 1 86487167 to 86488177 1010 CpG island CpG island 509
Tssr12800 1 86487331 to 86487369 38 - TSS region transcription start site region 12800
Tssr12801 1 86487376 to 86487396 20 - TSS region transcription start site region 12801
Tssr12802 1 86487405 to 86487450 45 - TSS region transcription start site region 12802
Tssr7758 1 86487746 to 86487770 24 + TSS region transcription start site region 7758
Tssr7759 1 86487771 to 86487831 60 + TSS region transcription start site region 7759
Tssr12803 1 86488848 to 86488859 11 - TSS region transcription start site region 12803
Tssr7760 1 86489045 to 86489059 14 + TSS region transcription start site region 7760
Tssr12804 1 86492219 to 86492251 32 - TSS region transcription start site region 12804
Tssr12805 1 86503403 to 86503416 13 - TSS region transcription start site region 12805
Tssr12806 1 86503426 to 86503448 22 - TSS region transcription start site region 12806
Tssr7761 1 86503579 to 86503589 10 + TSS region transcription start site region 7761
Tssr7762 1 86503601 to 86503617 16 + TSS region transcription start site region 7762
Tssr7763 1 86503629 to 86503638 9 + TSS region transcription start site region 7763
Cpgi510 1 86503711 to 86504729 1018 CpG island CpG island 510
Tssr12807 1 86504055 to 86504080 25 - TSS region transcription start site region 12807
Tssr12808 1 86504082 to 86504101 19 - TSS region transcription start site region 12808
Tssr144 1 86504391 to 86504410 19 - TSS region transcription start site region 144
Tssr7764 1 86504511 to 86504542 31 + TSS region transcription start site region 7764
Tssr7765 1 86504611 to 86504626 15 + TSS region transcription start site region 7765
Tssr7766 1 86522665 to 86522683 18 + TSS region transcription start site region 7766
Tssr7767 1 86522709 to 86522727 18 + TSS region transcription start site region 7767
Cpgi511 1 86524752 to 86528946 4194 CpG island CpG island 511
Tssr12809 1 86525276 to 86525310 34 - TSS region transcription start site region 12809
Tssr7768 1 86525490 to 86525525 35 + TSS region transcription start site region 7768
Tssr12810 1 86526205 to 86526247 42 - TSS region transcription start site region 12810
Tssr12811 1 86526548 to 86526559 11 - TSS region transcription start site region 12811
Tssr7769 1 86526688 to 86526722 34 + TSS region transcription start site region 7769
Ptma 1 86526736 to 86530698 3962 + protein coding gene prothymosin alpha
Tssr7770 1 86526789 to 86526806 17 + TSS region transcription start site region 7770
Tssr7771 1 86526823 to 86526859 36 + TSS region transcription start site region 7771
Tssr7772 1 86528862 to 86528873 11 + TSS region transcription start site region 7772
Pde6d 1 86542994 to 86582629 39635 - protein coding gene phosphodiesterase 6D, cGMP-specific, rod, delta
Gm37152 1 86580058 to 86581232 1174 + unclassified gene predicted gene, 37152
Cpgi512 1 86582046 to 86582861 815 CpG island CpG island 512
Tssr12812 1 86582500 to 86582565 65 - TSS region transcription start site region 12812
Tssr12813 1 86582776 to 86582790 14 - TSS region transcription start site region 12813
Cops7b 1 86582892 to 86606500 23608 + protein coding gene COP9 signalosome subunit 7B
Tssr7773 1 86582893 to 86582930 37 + TSS region transcription start site region 7773
Cpgi513 1 86586958 to 86587659 701 CpG island CpG island 513
Tssr7774 1 86587125 to 86587156 31 + TSS region transcription start site region 7774
Gm41908 1 86627068 to 86644243 17175 + lncRNA gene predicted gene, 41908
Gm22955 1 86637552 to 86637608 56 - miRNA gene predicted gene, 22955
Gm37022 1 86638201 to 86640454 2253 + unclassified gene predicted gene, 37022
Nppc 1 86666293 to 86670573 4280 - protein coding gene natriuretic peptide type C
Tssr12814 1 86666689 to 86666694 5 - TSS region transcription start site region 12814
Cpgi514 1 86669474 to 86671029 1555 CpG island CpG island 514
Tssr12815 1 86670565 to 86670579 14 - TSS region transcription start site region 12815
Cpgi515 1 86703251 to 86704241 990 CpG island CpG island 515
Tssr7775 1 86703788 to 86703843 55 + TSS region transcription start site region 7775
Dis3l2 1 86703808 to 87050095 346287 + protein coding gene DIS3 like 3'-5' exoribonuclease 2
Gm29097 1 86764944 to 86765365 421 - pseudogene predicted gene 29097
Gm29055 1 86774819 to 86776528 1709 + sense intronic lncRNA gene predicted gene 29055
Tssr7776 1 86789261 to 86789265 4 + TSS region transcription start site region 7776
Gm37485 1 86801075 to 86804027 2952 + unclassified gene predicted gene, 37485
Gm38142 1 86826101 to 86829655 3554 + unclassified gene predicted gene, 38142
Gm38010 1 86834995 to 86837778 2783 + unclassified gene predicted gene, 38010
Gm37541 1 86874350 to 86876664 2314 + unclassified gene predicted gene, 37541
Gm38021 1 86893573 to 86895132 1559 + unclassified gene predicted gene, 38021
Gm6136 1 86908793 to 86909683 890 - pseudogene predicted pseudogene 6136
Tssr12816 1 86909703 to 86909707 4 - TSS region transcription start site region 12816
Gm37967 1 86917992 to 86920656 2664 + unclassified gene predicted gene, 37967
Gm41909 1 86922934 to 86930742 7808 - lncRNA gene predicted gene, 41909
Gm37017 1 86988270 to 86989016 746 + unclassified gene predicted gene, 37017
Tssr7777 1 87020504 to 87020508 4 + TSS region transcription start site region 7777
Gm37447 1 87036723 to 87039650 2927 + unclassified gene predicted gene, 37447
Gm28375 1 87056505 to 87067441 10936 - antisense lncRNA gene predicted gene 28375
Tssr7778 1 87068001 to 87068018 17 + TSS region transcription start site region 7778
Akp-ps1 1 87068030 to 87071005 2975 + pseudogene alkaline phosphatase pseudogene 1
Gm41910 1 87071419 to 87072091 672 + lncRNA gene predicted gene, 41910
Gm29371 1 87080171 to 87096418 16247 + lincRNA gene predicted gene 29371
Alppl2 1 87086694 to 87089928 3234 - protein coding gene alkaline phosphatase, placental-like 2
Cpgi516 1 87087055 to 87087505 450 CpG island CpG island 516
Alpi 1 87098002 to 87101606 3604 - protein coding gene alkaline phosphatase, intestinal
Tssr12817 1 87098098 to 87098116 18 - TSS region transcription start site region 12817
Tssr12818 1 87098539 to 87098558 19 - TSS region transcription start site region 12818
Tssr12819 1 87098559 to 87098599 40 - TSS region transcription start site region 12819
Cpgi517 1 87098597 to 87099086 489 CpG island CpG island 517
Tssr12820 1 87098801 to 87098811 10 - TSS region transcription start site region 12820
Tssr12821 1 87098877 to 87098904 27 - TSS region transcription start site region 12821
Tssr7779 1 87099076 to 87099100 24 + TSS region transcription start site region 7779
Tssr12822 1 87099135 to 87099144 9 - TSS region transcription start site region 12822
Tssr12823 1 87099419 to 87099428 9 - TSS region transcription start site region 12823
Tssr12824 1 87099445 to 87099454 9 - TSS region transcription start site region 12824
Tssr12825 1 87099525 to 87099535 10 - TSS region transcription start site region 12825
Tssr12826 1 87099549 to 87099561 12 - TSS region transcription start site region 12826
Tssr7780 1 87099700 to 87099721 21 + TSS region transcription start site region 7780
Tssr12827 1 87099734 to 87099747 13 - TSS region transcription start site region 12827
Tssr12828 1 87100181 to 87100192 11 - TSS region transcription start site region 12828
Tssr12829 1 87100316 to 87100354 38 - TSS region transcription start site region 12829
Tssr12830 1 87100562 to 87100571 9 - TSS region transcription start site region 12830
Tssr12831 1 87100579 to 87100592 13 - TSS region transcription start site region 12831
Tssr12832 1 87100598 to 87100612 14 - TSS region transcription start site region 12832
Tssr12833 1 87101561 to 87101566 5 - TSS region transcription start site region 12833
Tssr12834 1 87101590 to 87101617 27 - TSS region transcription start site region 12834
Tssr12835 1 87101630 to 87101636 6 - TSS region transcription start site region 12835
Tssr12836 1 87101715 to 87101719 4 - TSS region transcription start site region 12836
Tssr12837 1 87102236 to 87102252 16 - TSS region transcription start site region 12837
Gm29372 1 87116321 to 87117158 837 - pseudogene predicted gene 29372
Tssr7781 1 87124946 to 87124960 14 + TSS region transcription start site region 7781
Akp3 1 87125008 to 87127912 2904 + protein coding gene alkaline phosphatase 3, intestine, not Mn requiring
Tssr7782 1 87125396 to 87125403 7 + TSS region transcription start site region 7782
Tssr7783 1 87125688 to 87125696 8 + TSS region transcription start site region 7783
Tssr12838 1 87125718 to 87125730 12 - TSS region transcription start site region 12838