Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:85841959-86201972

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cab39 1 85793441 to 85851576 58135 + protein coding gene calcium binding protein 39
Tssr7698 1 85849210 to 85849242 32 + TSS region transcription start site region 7698
Tssr7699 1 85851435 to 85851460 25 + TSS region transcription start site region 7699
Tssr12744 1 85864601 to 85864615 14 - TSS region transcription start site region 12744
Itm2c 1 85894281 to 85908675 14394 + protein coding gene integral membrane protein 2C
Cpgi494 1 85894326 to 85895139 813 CpG island CpG island 494
Tssr7700 1 85894449 to 85894454 5 + TSS region transcription start site region 7700
Tssr7701 1 85894531 to 85894655 124 + TSS region transcription start site region 7701
Tssr12745 1 85895454 to 85895462 8 - TSS region transcription start site region 12745
Cpgi495 1 85895579 to 85895797 218 CpG island CpG island 495
Tssr7702 1 85903096 to 85903116 20 + TSS region transcription start site region 7702
Tssr7703 1 85904583 to 85904586 3 + TSS region transcription start site region 7703
Tssr7704 1 85906416 to 85906432 16 + TSS region transcription start site region 7704
Tssr7705 1 85907008 to 85907021 13 + TSS region transcription start site region 7705
Gm32302 1 85914822 to 85921555 6733 + lncRNA gene predicted gene, 32302
4933407L21Rik 1 85928483 to 85931756 3273 + protein coding gene RIKEN cDNA 4933407L21 gene
Tssr7706 1 85928879 to 85928903 24 + TSS region transcription start site region 7706
Gm28884 1 85933247 to 85937332 4085 - antisense lncRNA gene predicted gene 28884
Gpr55 1 85938318 to 85961007 22689 - protein coding gene G protein-coupled receptor 55
Tssr12746 1 85956738 to 85956747 9 - TSS region transcription start site region 12746
Gm41905 1 85957113 to 85973340 16227 + lncRNA gene predicted gene, 41905
Tssr7707 1 85957562 to 85957573 11 + TSS region transcription start site region 7707
Tssr12747 1 85959679 to 85959688 9 - TSS region transcription start site region 12747
Tssr12748 1 85961029 to 85961073 44 - TSS region transcription start site region 12748
Gm28100 1 85972365 to 85986917 14552 - lincRNA gene predicted gene 28100
Tssr12749 1 85986917 to 85986951 34 - TSS region transcription start site region 12749
Tssr12750 1 85991458 to 85991468 10 - TSS region transcription start site region 12750
Tssr12751 1 85991477 to 85991496 19 - TSS region transcription start site region 12751
Gm18180 1 86014403 to 86015886 1483 - pseudogene predicted gene, 18180
Spata3 1 86017841 to 86029958 12117 + protein coding gene spermatogenesis associated 3
Cpgi496 1 86018040 to 86018906 866 CpG island CpG island 496
Tssr7708 1 86018068 to 86018084 16 + TSS region transcription start site region 7708
Tssr12752 1 86021836 to 86021850 14 - TSS region transcription start site region 12752
Tssr7709 1 86021935 to 86021953 18 + TSS region transcription start site region 7709
Tssr7710 1 86021959 to 86021972 13 + TSS region transcription start site region 7710
Tssr7711 1 86022163 to 86022176 13 + TSS region transcription start site region 7711
Tssr7712 1 86026203 to 86026213 10 + TSS region transcription start site region 7712
Tssr7713 1 86026387 to 86026407 20 + TSS region transcription start site region 7713
Tssr7714 1 86026426 to 86026448 22 + TSS region transcription start site region 7714
Tssr7715 1 86039638 to 86039643 5 + TSS region transcription start site region 7715
Tssr140 1 86039659 to 86039662 3 + TSS region transcription start site region 140
Tssr7716 1 86039663 to 86039674 11 + TSS region transcription start site region 7716
Cpgi497 1 86045669 to 86046787 1118 CpG island CpG island 497
2810459M11Rik 1 86045863 to 86055456 9593 + protein coding gene RIKEN cDNA 2810459M11 gene
Tssr7717 1 86045920 to 86045968 48 + TSS region transcription start site region 7717
Cpgi498 1 86047040 to 86047350 310 CpG island CpG island 498
Tssr7718 1 86053043 to 86053072 29 + TSS region transcription start site region 7718
Tssr7719 1 86053865 to 86053879 14 + TSS region transcription start site region 7719
Cpgi499 1 86064526 to 86065158 632 CpG island CpG island 499
Psmd1 1 86064619 to 86139295 74676 + protein coding gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 1
Tssr7720 1 86064625 to 86064648 23 + TSS region transcription start site region 7720
Tssr7721 1 86064649 to 86064681 32 + TSS region transcription start site region 7721
Gm22786 1 86087301 to 86087422 121 + snoRNA gene predicted gene, 22786
Htr2b 1 86099026 to 86111970 12944 - protein coding gene 5-hydroxytryptamine (serotonin) receptor 2B
Tssr12753 1 86110749 to 86110761 12 - TSS region transcription start site region 12753
Tssr12754 1 86110766 to 86110775 9 - TSS region transcription start site region 12754
Tssr12755 1 86110826 to 86110849 23 - TSS region transcription start site region 12755
Tssr7722 1 86110855 to 86110862 7 + TSS region transcription start site region 7722
Tssr7723 1 86110889 to 86110905 16 + TSS region transcription start site region 7723
Tssr7724 1 86110950 to 86110973 23 + TSS region transcription start site region 7724
Tssr7725 1 86110976 to 86110983 7 + TSS region transcription start site region 7725
Tssr7726 1 86110988 to 86110999 11 + TSS region transcription start site region 7726
Tssr7727 1 86111004 to 86111011 7 + TSS region transcription start site region 7727
Tssr7728 1 86111021 to 86111024 3 + TSS region transcription start site region 7728
Tssr12756 1 86111909 to 86111927 18 - TSS region transcription start site region 12756
Tssr12757 1 86111974 to 86111984 10 - TSS region transcription start site region 12757
Tssr12758 1 86111996 to 86112031 35 - TSS region transcription start site region 12758
Gm37914 1 86120883 to 86123561 2678 + unclassified gene predicted gene, 37914
Tssr12759 1 86124453 to 86124456 3 - TSS region transcription start site region 12759
Tssr7729 1 86128192 to 86128211 19 + TSS region transcription start site region 7729
Tssr7730 1 86128250 to 86128271 21 + TSS region transcription start site region 7730
Tssr7731 1 86132693 to 86132739 46 + TSS region transcription start site region 7731
Gm21972 1 86133637 to 86162788 29151 + protein coding gene predicted gene 21972
D1Mit83 1 86146986 to 86147135 149 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 83
Cpgi500 1 86154459 to 86155074 615 CpG island CpG island 500
Tssr12760 1 86154598 to 86154607 9 - TSS region transcription start site region 12760
Tssr12761 1 86154620 to 86154634 14 - TSS region transcription start site region 12761
Tssr7732 1 86154752 to 86154821 69 + TSS region transcription start site region 7732
Armc9 1 86154780 to 86278284 123504 + protein coding gene armadillo repeat containing 9
Tssr7733 1 86191032 to 86191053 21 + TSS region transcription start site region 7733