Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:85689659-86389662

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186 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Emo4 1 68032186 to 86307305 18275119 QTL emotionality 4
Sp100 1 85649988 to 85709998 60010 + protein coding gene nuclear antigen Sp100
Tssr139 1 85699533 to 85699538 5 + TSS region transcription start site region 139
Tssr7687 1 85699636 to 85699650 14 + TSS region transcription start site region 7687
Cpgi492 1 85703432 to 85703809 377 CpG island CpG island 492
Tssr7688 1 85708063 to 85708097 34 + TSS region transcription start site region 7688
Tssr7689 1 85709333 to 85709361 28 + TSS region transcription start site region 7689
Tssr7690 1 85709387 to 85709403 16 + TSS region transcription start site region 7690
Tssr7691 1 85709419 to 85709433 14 + TSS region transcription start site region 7691
Tssr7692 1 85709450 to 85709461 11 + TSS region transcription start site region 7692
Tssr7693 1 85709593 to 85709617 24 + TSS region transcription start site region 7693
A630001G21Rik 1 85717083 to 85736656 19573 - protein coding gene RIKEN cDNA A630001G21 gene
Tssr12731 1 85723819 to 85723824 5 - TSS region transcription start site region 12731
Tssr12732 1 85727000 to 85727021 21 - TSS region transcription start site region 12732
Tssr12733 1 85727084 to 85727099 15 - TSS region transcription start site region 12733
Tssr12734 1 85727157 to 85727179 22 - TSS region transcription start site region 12734
Tssr12735 1 85727186 to 85727199 13 - TSS region transcription start site region 12735
Tssr12736 1 85727239 to 85727254 15 - TSS region transcription start site region 12736
Tssr12737 1 85727482 to 85727504 22 - TSS region transcription start site region 12737
Tssr12738 1 85731153 to 85731159 6 - TSS region transcription start site region 12738
Tssr12739 1 85731196 to 85731242 46 - TSS region transcription start site region 12739
Tssr12740 1 85734479 to 85734483 4 - TSS region transcription start site region 12740
Tssr12741 1 85736525 to 85736624 99 - TSS region transcription start site region 12741
Mir8096 1 85751948 to 85752074 126 + miRNA gene microRNA 8096
Tssr12742 1 85752453 to 85752464 11 - TSS region transcription start site region 12742
Tssr12743 1 85752472 to 85752493 21 - TSS region transcription start site region 12743
Gm25472 1 85763794 to 85763871 77 + miRNA gene predicted gene, 25472
D1Mit81 1 85768306 to 85768487 181 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 81
9930111H07Rik 1 85775271 to 85784694 9423 + lincRNA gene RIKEN cDNA 9930111H07 gene
Tssr7694 1 85780068 to 85780084 16 + TSS region transcription start site region 7694
Gm22906 1 85784713 to 85784962 249 + unclassified non-coding RNA gene predicted gene, 22906
Cpgi493 1 85793165 to 85794572 1407 CpG island CpG island 493
Tssr7695 1 85793411 to 85793517 106 + TSS region transcription start site region 7695
Cab39 1 85793441 to 85851576 58135 + protein coding gene calcium binding protein 39
Tssr7696 1 85801893 to 85801897 4 + TSS region transcription start site region 7696
Tssr7697 1 85831940 to 85831944 4 + TSS region transcription start site region 7697
Tssr7698 1 85849210 to 85849242 32 + TSS region transcription start site region 7698
Tssr7699 1 85851435 to 85851460 25 + TSS region transcription start site region 7699
Tssr12744 1 85864601 to 85864615 14 - TSS region transcription start site region 12744
Itm2c 1 85894281 to 85908675 14394 + protein coding gene integral membrane protein 2C
Cpgi494 1 85894326 to 85895139 813 CpG island CpG island 494
Tssr7700 1 85894449 to 85894454 5 + TSS region transcription start site region 7700
Tssr7701 1 85894531 to 85894655 124 + TSS region transcription start site region 7701
Tssr12745 1 85895454 to 85895462 8 - TSS region transcription start site region 12745
Cpgi495 1 85895579 to 85895797 218 CpG island CpG island 495
Tssr7702 1 85903096 to 85903116 20 + TSS region transcription start site region 7702
Tssr7703 1 85904583 to 85904586 3 + TSS region transcription start site region 7703
Tssr7704 1 85906416 to 85906432 16 + TSS region transcription start site region 7704
Tssr7705 1 85907008 to 85907021 13 + TSS region transcription start site region 7705
Gm32302 1 85914822 to 85921555 6733 + lncRNA gene predicted gene, 32302
4933407L21Rik 1 85928483 to 85931756 3273 + protein coding gene RIKEN cDNA 4933407L21 gene
Tssr7706 1 85928879 to 85928903 24 + TSS region transcription start site region 7706
Gm28884 1 85933247 to 85937332 4085 - antisense lncRNA gene predicted gene 28884
Gpr55 1 85938318 to 85961007 22689 - protein coding gene G protein-coupled receptor 55
Tssr12746 1 85956738 to 85956747 9 - TSS region transcription start site region 12746
Gm41905 1 85957113 to 85973340 16227 + lncRNA gene predicted gene, 41905
Tssr7707 1 85957562 to 85957573 11 + TSS region transcription start site region 7707
Tssr12747 1 85959679 to 85959688 9 - TSS region transcription start site region 12747
Tssr12748 1 85961029 to 85961073 44 - TSS region transcription start site region 12748
Gm28100 1 85972365 to 85986917 14552 - lincRNA gene predicted gene 28100
Tssr12749 1 85986917 to 85986951 34 - TSS region transcription start site region 12749
Tssr12750 1 85991458 to 85991468 10 - TSS region transcription start site region 12750
Tssr12751 1 85991477 to 85991496 19 - TSS region transcription start site region 12751
Gm18180 1 86014403 to 86015886 1483 - pseudogene predicted gene, 18180
Spata3 1 86017841 to 86029958 12117 + protein coding gene spermatogenesis associated 3
Cpgi496 1 86018040 to 86018906 866 CpG island CpG island 496
Tssr7708 1 86018068 to 86018084 16 + TSS region transcription start site region 7708
Tssr12752 1 86021836 to 86021850 14 - TSS region transcription start site region 12752
Tssr7709 1 86021935 to 86021953 18 + TSS region transcription start site region 7709
Tssr7710 1 86021959 to 86021972 13 + TSS region transcription start site region 7710
Tssr7711 1 86022163 to 86022176 13 + TSS region transcription start site region 7711
Tssr7712 1 86026203 to 86026213 10 + TSS region transcription start site region 7712
Tssr7713 1 86026387 to 86026407 20 + TSS region transcription start site region 7713
Tssr7714 1 86026426 to 86026448 22 + TSS region transcription start site region 7714
Tssr7715 1 86039638 to 86039643 5 + TSS region transcription start site region 7715
Tssr140 1 86039659 to 86039662 3 + TSS region transcription start site region 140
Tssr7716 1 86039663 to 86039674 11 + TSS region transcription start site region 7716
Cpgi497 1 86045669 to 86046787 1118 CpG island CpG island 497
2810459M11Rik 1 86045863 to 86055456 9593 + protein coding gene RIKEN cDNA 2810459M11 gene
Tssr7717 1 86045920 to 86045968 48 + TSS region transcription start site region 7717
Cpgi498 1 86047040 to 86047350 310 CpG island CpG island 498
Tssr7718 1 86053043 to 86053072 29 + TSS region transcription start site region 7718
Tssr7719 1 86053865 to 86053879 14 + TSS region transcription start site region 7719
Cpgi499 1 86064526 to 86065158 632 CpG island CpG island 499
Psmd1 1 86064619 to 86139295 74676 + protein coding gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 1
Tssr7720 1 86064625 to 86064648 23 + TSS region transcription start site region 7720
Tssr7721 1 86064649 to 86064681 32 + TSS region transcription start site region 7721
Gm22786 1 86087301 to 86087422 121 + snoRNA gene predicted gene, 22786
Htr2b 1 86099026 to 86111970 12944 - protein coding gene 5-hydroxytryptamine (serotonin) receptor 2B
Tssr12753 1 86110749 to 86110761 12 - TSS region transcription start site region 12753
Tssr12754 1 86110766 to 86110775 9 - TSS region transcription start site region 12754
Tssr12755 1 86110826 to 86110849 23 - TSS region transcription start site region 12755
Tssr7722 1 86110855 to 86110862 7 + TSS region transcription start site region 7722
Tssr7723 1 86110889 to 86110905 16 + TSS region transcription start site region 7723
Tssr7724 1 86110950 to 86110973 23 + TSS region transcription start site region 7724
Tssr7725 1 86110976 to 86110983 7 + TSS region transcription start site region 7725
Tssr7726 1 86110988 to 86110999 11 + TSS region transcription start site region 7726
Tssr7727 1 86111004 to 86111011 7 + TSS region transcription start site region 7727
Tssr7728 1 86111021 to 86111024 3 + TSS region transcription start site region 7728
Tssr12756 1 86111909 to 86111927 18 - TSS region transcription start site region 12756
Tssr12757 1 86111974 to 86111984 10 - TSS region transcription start site region 12757
Tssr12758 1 86111996 to 86112031 35 - TSS region transcription start site region 12758
Gm37914 1 86120883 to 86123561 2678 + unclassified gene predicted gene, 37914
Tssr12759 1 86124453 to 86124456 3 - TSS region transcription start site region 12759
Tssr7729 1 86128192 to 86128211 19 + TSS region transcription start site region 7729
Tssr7730 1 86128250 to 86128271 21 + TSS region transcription start site region 7730
Tssr7731 1 86132693 to 86132739 46 + TSS region transcription start site region 7731
Gm21972 1 86133637 to 86162788 29151 + protein coding gene predicted gene 21972
D1Mit83 1 86146986 to 86147135 149 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 83
Cpgi500 1 86154459 to 86155074 615 CpG island CpG island 500
Tssr12760 1 86154598 to 86154607 9 - TSS region transcription start site region 12760
Tssr12761 1 86154620 to 86154634 14 - TSS region transcription start site region 12761
Tssr7732 1 86154752 to 86154821 69 + TSS region transcription start site region 7732
Armc9 1 86154780 to 86278284 123504 + protein coding gene armadillo repeat containing 9
Tssr7733 1 86191032 to 86191053 21 + TSS region transcription start site region 7733
Tssr12762 1 86215412 to 86215423 11 - TSS region transcription start site region 12762
Tssr12763 1 86226557 to 86226598 41 - TSS region transcription start site region 12763
Tssr7734 1 86234023 to 86234035 12 + TSS region transcription start site region 7734
Gm46098 1 86245335 to 86256796 11461 - lncRNA gene predicted gene, 46098
Gm16341 1 86281042 to 86301770 20728 - antisense lncRNA gene predicted gene 16341
Tssr12764 1 86301354 to 86301366 12 - TSS region transcription start site region 12764
Tssr12765 1 86301388 to 86301404 16 - TSS region transcription start site region 12765
Cpgi501 1 86302915 to 86304178 1263 CpG island CpG island 501
Gm28626 1 86303195 to 86304059 864 - antisense lncRNA gene predicted gene 28626
B3gnt7 1 86303221 to 86307305 4084 + protein coding gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7
Tssr7735 1 86303225 to 86303239 14 + TSS region transcription start site region 7735
Tssr7736 1 86303437 to 86303446 9 + TSS region transcription start site region 7736
Tssr7737 1 86303453 to 86303482 29 + TSS region transcription start site region 7737
Tssr7738 1 86303489 to 86303503 14 + TSS region transcription start site region 7738
Tssr7739 1 86306777 to 86306802 25 + TSS region transcription start site region 7739
Tssr12766 1 86308394 to 86308403 9 - TSS region transcription start site region 12766
Tssr7740 1 86308555 to 86308578 23 + TSS region transcription start site region 7740
Tssr7741 1 86312605 to 86312609 4 + TSS region transcription start site region 7741
Cpgi502 1 86313576 to 86314073 497 CpG island CpG island 502
Gm5258 1 86323267 to 86323593 326 + pseudogene predicted gene 5258
Gm28627 1 86328039 to 86328873 834 + pseudogene predicted gene 28627
Ncl 1 86344719 to 86359400 14681 - protein coding gene nucleolin
Tssr141 1 86347639 to 86347674 35 - TSS region transcription start site region 141
Tssr12767 1 86348014 to 86348018 4 - TSS region transcription start site region 12767
Tssr7742 1 86350645 to 86350666 21 + TSS region transcription start site region 7742
Tssr7743 1 86350809 to 86350845 36 + TSS region transcription start site region 7743
Tssr12768 1 86351029 to 86351037 8 - TSS region transcription start site region 12768
Snora75 1 86351170 to 86351285 115 - snoRNA gene small nucleolar RNA, H/ACA box 75
Tssr12769 1 86351399 to 86351425 26 - TSS region transcription start site region 12769
Mir3535 1 86351981 to 86352127 146 - miRNA gene microRNA 3535
Gm24148 1 86352008 to 86352087 79 - snoRNA gene predicted gene, 24148
Tssr12770 1 86352084 to 86352088 4 - TSS region transcription start site region 12770
Tssr12771 1 86353252 to 86353283 31 - TSS region transcription start site region 12771
Tssr12772 1 86353810 to 86353859 49 - TSS region transcription start site region 12772
Tssr12773 1 86356179 to 86356198 19 - TSS region transcription start site region 12773
Snord82 1 86356260 to 86356327 67 - snoRNA gene small nucleolar RNA, C/D box 82
Tssr12774 1 86356303 to 86356328 25 - TSS region transcription start site region 12774
Tssr7744 1 86356393 to 86356427 34 + TSS region transcription start site region 7744
Tssr12775 1 86356452 to 86356464 12 - TSS region transcription start site region 12775
Tssr7745 1 86356552 to 86356633 81 + TSS region transcription start site region 7745
Tssr12776 1 86356638 to 86356651 13 - TSS region transcription start site region 12776
Tssr142 1 86357021 to 86357031 10 + TSS region transcription start site region 142
Tssr12777 1 86357031 to 86357072 41 - TSS region transcription start site region 12777
Tssr7746 1 86357038 to 86357061 23 + TSS region transcription start site region 7746
Tssr12778 1 86357073 to 86357149 76 - TSS region transcription start site region 12778
Tssr7747 1 86357073 to 86357113 40 + TSS region transcription start site region 7747
Tssr12779 1 86357150 to 86357168 18 - TSS region transcription start site region 12779
Tssr12780 1 86357183 to 86357221 38 - TSS region transcription start site region 12780
Tssr12781 1 86357227 to 86357269 42 - TSS region transcription start site region 12781
Tssr7748 1 86357231 to 86357294 63 + TSS region transcription start site region 7748
Tssr12782 1 86357313 to 86357344 31 - TSS region transcription start site region 12782
Tssr12783 1 86357364 to 86357378 14 - TSS region transcription start site region 12783
Tssr12784 1 86357381 to 86357405 24 - TSS region transcription start site region 12784
Tssr12785 1 86357420 to 86357434 14 - TSS region transcription start site region 12785
D1Mit516 1 86357856 to 86358108 252 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-516
Tssr12786 1 86358211 to 86358232 21 - TSS region transcription start site region 12786
Tssr12787 1 86358476 to 86358481 5 - TSS region transcription start site region 12787
Cpgi503 1 86358552 to 86360335 1783 CpG island CpG island 503
Tssr12788 1 86358970 to 86358997 27 - TSS region transcription start site region 12788
Tssr12789 1 86359018 to 86359046 28 - TSS region transcription start site region 12789
Tssr12790 1 86359358 to 86359381 23 - TSS region transcription start site region 12790
Tssr12791 1 86359481 to 86359486 5 - TSS region transcription start site region 12791
Tssr7749 1 86359553 to 86359590 37 + TSS region transcription start site region 7749
C130036L24Rik 1 86359574 to 86367964 8390 + lncRNA gene RIKEN cDNA C130036L24 gene
Tssr7750 1 86359638 to 86359692 54 + TSS region transcription start site region 7750
Tssr12792 1 86359951 to 86359966 15 - TSS region transcription start site region 12792
Gm45908 1 86377100 to 86378276 1176 - pseudogene predicted gene 45908
Nmur1 1 86386242 to 86389361 3119 - protein coding gene neuromedin U receptor 1
Cpgi504 1 86387561 to 86388021 460 CpG island CpG island 504
Tssr12793 1 86389369 to 86389429 60 - TSS region transcription start site region 12793
Led2 1 117267351 to 85768306 -31499045 QTL late embryonic death 2