Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:85641940-86021944

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sp140 1 85600703 to 85645040 44337 + protein coding gene Sp140 nuclear body protein
Gm17017 1 85641222 to 85650585 9363 - antisense lncRNA gene predicted gene 17017
Sp100 1 85649988 to 85709998 60010 + protein coding gene nuclear antigen Sp100
Tssr7672 1 85649997 to 85650004 7 + TSS region transcription start site region 7672
Tssr7673 1 85650008 to 85650020 12 + TSS region transcription start site region 7673
Tssr7674 1 85650027 to 85650042 15 + TSS region transcription start site region 7674
Tssr7675 1 85650044 to 85650052 8 + TSS region transcription start site region 7675
Tssr7676 1 85663546 to 85663572 26 + TSS region transcription start site region 7676
Tssr7677 1 85665272 to 85665322 50 + TSS region transcription start site region 7677
Tssr7678 1 85670078 to 85670090 12 + TSS region transcription start site region 7678
Tssr7679 1 85670912 to 85670919 7 + TSS region transcription start site region 7679
Tssr7680 1 85673706 to 85673723 17 + TSS region transcription start site region 7680
n-R5s215 1 85674882 to 85674985 103 + rRNA gene nuclear encoded rRNA 5S 215
Tssr7681 1 85681071 to 85681109 38 + TSS region transcription start site region 7681
Tssr7682 1 85682289 to 85682304 15 + TSS region transcription start site region 7682
Tssr7683 1 85682388 to 85682402 14 + TSS region transcription start site region 7683
Tssr7684 1 85682408 to 85682421 13 + TSS region transcription start site region 7684
Tssr7685 1 85685087 to 85685104 17 + TSS region transcription start site region 7685
Tssr7686 1 85688240 to 85688245 5 + TSS region transcription start site region 7686
Tssr139 1 85699533 to 85699538 5 + TSS region transcription start site region 139
Tssr7687 1 85699636 to 85699650 14 + TSS region transcription start site region 7687
Cpgi492 1 85703432 to 85703809 377 CpG island CpG island 492
Tssr7688 1 85708063 to 85708097 34 + TSS region transcription start site region 7688
Tssr7689 1 85709333 to 85709361 28 + TSS region transcription start site region 7689
Tssr7690 1 85709387 to 85709403 16 + TSS region transcription start site region 7690
Tssr7691 1 85709419 to 85709433 14 + TSS region transcription start site region 7691
Tssr7692 1 85709450 to 85709461 11 + TSS region transcription start site region 7692
Tssr7693 1 85709593 to 85709617 24 + TSS region transcription start site region 7693
A630001G21Rik 1 85717083 to 85736656 19573 - protein coding gene RIKEN cDNA A630001G21 gene
Tssr12731 1 85723819 to 85723824 5 - TSS region transcription start site region 12731
Tssr12732 1 85727000 to 85727021 21 - TSS region transcription start site region 12732
Tssr12733 1 85727084 to 85727099 15 - TSS region transcription start site region 12733
Tssr12734 1 85727157 to 85727179 22 - TSS region transcription start site region 12734
Tssr12735 1 85727186 to 85727199 13 - TSS region transcription start site region 12735
Tssr12736 1 85727239 to 85727254 15 - TSS region transcription start site region 12736
Tssr12737 1 85727482 to 85727504 22 - TSS region transcription start site region 12737
Tssr12738 1 85731153 to 85731159 6 - TSS region transcription start site region 12738
Tssr12739 1 85731196 to 85731242 46 - TSS region transcription start site region 12739
Tssr12740 1 85734479 to 85734483 4 - TSS region transcription start site region 12740
Tssr12741 1 85736525 to 85736624 99 - TSS region transcription start site region 12741
Mir8096 1 85751948 to 85752074 126 + miRNA gene microRNA 8096
Tssr12742 1 85752453 to 85752464 11 - TSS region transcription start site region 12742
Tssr12743 1 85752472 to 85752493 21 - TSS region transcription start site region 12743
Gm25472 1 85763794 to 85763871 77 + miRNA gene predicted gene, 25472
D1Mit81 1 85768306 to 85768487 181 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 81
9930111H07Rik 1 85775271 to 85784694 9423 + lincRNA gene RIKEN cDNA 9930111H07 gene
Tssr7694 1 85780068 to 85780084 16 + TSS region transcription start site region 7694
Gm22906 1 85784713 to 85784962 249 + unclassified non-coding RNA gene predicted gene, 22906
Cpgi493 1 85793165 to 85794572 1407 CpG island CpG island 493
Tssr7695 1 85793411 to 85793517 106 + TSS region transcription start site region 7695
Cab39 1 85793441 to 85851576 58135 + protein coding gene calcium binding protein 39
Tssr7696 1 85801893 to 85801897 4 + TSS region transcription start site region 7696
Tssr7697 1 85831940 to 85831944 4 + TSS region transcription start site region 7697
Tssr7698 1 85849210 to 85849242 32 + TSS region transcription start site region 7698
Tssr7699 1 85851435 to 85851460 25 + TSS region transcription start site region 7699
Tssr12744 1 85864601 to 85864615 14 - TSS region transcription start site region 12744
Itm2c 1 85894281 to 85908675 14394 + protein coding gene integral membrane protein 2C
Cpgi494 1 85894326 to 85895139 813 CpG island CpG island 494
Tssr7700 1 85894449 to 85894454 5 + TSS region transcription start site region 7700
Tssr7701 1 85894531 to 85894655 124 + TSS region transcription start site region 7701
Tssr12745 1 85895454 to 85895462 8 - TSS region transcription start site region 12745
Cpgi495 1 85895579 to 85895797 218 CpG island CpG island 495
Tssr7702 1 85903096 to 85903116 20 + TSS region transcription start site region 7702
Tssr7703 1 85904583 to 85904586 3 + TSS region transcription start site region 7703
Tssr7704 1 85906416 to 85906432 16 + TSS region transcription start site region 7704
Tssr7705 1 85907008 to 85907021 13 + TSS region transcription start site region 7705
Gm32302 1 85914822 to 85921555 6733 + lncRNA gene predicted gene, 32302
4933407L21Rik 1 85928483 to 85931756 3273 + protein coding gene RIKEN cDNA 4933407L21 gene
Tssr7706 1 85928879 to 85928903 24 + TSS region transcription start site region 7706
Gm28884 1 85933247 to 85937332 4085 - antisense lncRNA gene predicted gene 28884
Gpr55 1 85938318 to 85961007 22689 - protein coding gene G protein-coupled receptor 55
Tssr12746 1 85956738 to 85956747 9 - TSS region transcription start site region 12746
Gm41905 1 85957113 to 85973340 16227 + lncRNA gene predicted gene, 41905
Tssr7707 1 85957562 to 85957573 11 + TSS region transcription start site region 7707
Tssr12747 1 85959679 to 85959688 9 - TSS region transcription start site region 12747
Tssr12748 1 85961029 to 85961073 44 - TSS region transcription start site region 12748
Gm28100 1 85972365 to 85986917 14552 - lincRNA gene predicted gene 28100
Tssr12749 1 85986917 to 85986951 34 - TSS region transcription start site region 12749
Tssr12750 1 85991458 to 85991468 10 - TSS region transcription start site region 12750
Tssr12751 1 85991477 to 85991496 19 - TSS region transcription start site region 12751
Gm18180 1 86014403 to 86015886 1483 - pseudogene predicted gene, 18180
Spata3 1 86017841 to 86029958 12117 + protein coding gene spermatogenesis associated 3
Cpgi496 1 86018040 to 86018906 866 CpG island CpG island 496
Tssr7708 1 86018068 to 86018084 16 + TSS region transcription start site region 7708
Tssr12752 1 86021836 to 86021850 14 - TSS region transcription start site region 12752
Tssr7709 1 86021935 to 86021953 18 + TSS region transcription start site region 7709
Led2 1 117267351 to 85768306 -31499045 QTL late embryonic death 2