Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:85271690-85805577

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm38510 1 85156899 to 85309015 152116 - protein coding gene predicted gene, 38510
Gm16026 1 85266698 to 85285491 18793 + pseudogene predicted pseudogene 16026
Cpgi487 1 85272300 to 85272500 200 CpG island CpG island 487
Tssr7660 1 85272400 to 85272416 16 + TSS region transcription start site region 7660
Tssr7661 1 85276899 to 85276947 48 + TSS region transcription start site region 7661
Cpgi488 1 85276973 to 85277154 181 CpG island CpG island 488
Gm2619 1 85313407 to 85317321 3914 - pseudogene predicted gene 2619
Tssr137 1 85326708 to 85326716 8 + TSS region transcription start site region 137
Gm16025 1 85326729 to 85342615 15886 + lincRNA gene predicted gene 16025
Tssr138 1 85330434 to 85330435 1 + TSS region transcription start site region 138
Gm7281 1 85332716 to 85342086 9370 - pseudogene predicted gene 7281
Gm2666 1 85484252 to 85485142 890 - pseudogene predicted gene 2666
Gm2427 1 85501090 to 85514604 13514 + pseudogene predicted gene 2427
Gm16092 1 85511133 to 85527161 16028 - lincRNA gene predicted gene 16092
Gm7592 1 85526690 to 85550577 23887 + pseudogene predicted gene 7592
D1Mit335 1 85528077 to 85528225 148 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 335
G530012D18Rik 1 85575676 to 85577295 1619 + protein coding gene RIKEN cDNA G530012D1 gene
Sp110 1 85576899 to 85598817 21918 - protein coding gene Sp110 nuclear body protein
Tssr12727 1 85591080 to 85591104 24 - TSS region transcription start site region 12727
Cpgi489 1 85591248 to 85591922 674 CpG island CpG island 489
Tssr12728 1 85591659 to 85591686 27 - TSS region transcription start site region 12728
Cpgi490 1 85592299 to 85592873 574 CpG island CpG island 490
Tssr7662 1 85598130 to 85598149 19 + TSS region transcription start site region 7662
Tssr12729 1 85598796 to 85598822 26 - TSS region transcription start site region 12729
Tssr7663 1 85599082 to 85599095 13 + TSS region transcription start site region 7663
Gm16094 1 85599286 to 85599839 553 + antisense lncRNA gene predicted gene 16094
Tssr7664 1 85600650 to 85600661 11 + TSS region transcription start site region 7664
Tssr7665 1 85600672 to 85600704 32 + TSS region transcription start site region 7665
Sp140 1 85600703 to 85645040 44337 + protein coding gene Sp140 nuclear body protein
Tssr7666 1 85600830 to 85600865 35 + TSS region transcription start site region 7666
Tssr7667 1 85600868 to 85600879 11 + TSS region transcription start site region 7667
Tssr7668 1 85601015 to 85601018 3 + TSS region transcription start site region 7668
Tssr7669 1 85601035 to 85601070 35 + TSS region transcription start site region 7669
Tssr12730 1 85604507 to 85604539 32 - TSS region transcription start site region 12730
Tssr7670 1 85608489 to 85608514 25 + TSS region transcription start site region 7670
Gm10552 1 85609572 to 85610850 1278 - antisense lncRNA gene predicted gene 10552
Tssr7671 1 85610860 to 85610871 11 + TSS region transcription start site region 7671
Gm17017 1 85641222 to 85650585 9363 - antisense lncRNA gene predicted gene 17017
Sp100 1 85649988 to 85709998 60010 + protein coding gene nuclear antigen Sp100
Tssr7672 1 85649997 to 85650004 7 + TSS region transcription start site region 7672
Tssr7673 1 85650008 to 85650020 12 + TSS region transcription start site region 7673
Tssr7674 1 85650027 to 85650042 15 + TSS region transcription start site region 7674
Tssr7675 1 85650044 to 85650052 8 + TSS region transcription start site region 7675
Tssr7676 1 85663546 to 85663572 26 + TSS region transcription start site region 7676
Tssr7677 1 85665272 to 85665322 50 + TSS region transcription start site region 7677
Tssr7678 1 85670078 to 85670090 12 + TSS region transcription start site region 7678
Tssr7679 1 85670912 to 85670919 7 + TSS region transcription start site region 7679
Tssr7680 1 85673706 to 85673723 17 + TSS region transcription start site region 7680
n-R5s215 1 85674882 to 85674985 103 + rRNA gene nuclear encoded rRNA 5S 215
Tssr7681 1 85681071 to 85681109 38 + TSS region transcription start site region 7681
Tssr7682 1 85682289 to 85682304 15 + TSS region transcription start site region 7682
Tssr7683 1 85682388 to 85682402 14 + TSS region transcription start site region 7683
Tssr7684 1 85682408 to 85682421 13 + TSS region transcription start site region 7684
Tssr7685 1 85685087 to 85685104 17 + TSS region transcription start site region 7685
Tssr7686 1 85688240 to 85688245 5 + TSS region transcription start site region 7686
Tssr139 1 85699533 to 85699538 5 + TSS region transcription start site region 139
Tssr7687 1 85699636 to 85699650 14 + TSS region transcription start site region 7687
Cpgi492 1 85703432 to 85703809 377 CpG island CpG island 492
Tssr7688 1 85708063 to 85708097 34 + TSS region transcription start site region 7688
Tssr7689 1 85709333 to 85709361 28 + TSS region transcription start site region 7689
Tssr7690 1 85709387 to 85709403 16 + TSS region transcription start site region 7690
Tssr7691 1 85709419 to 85709433 14 + TSS region transcription start site region 7691
Tssr7692 1 85709450 to 85709461 11 + TSS region transcription start site region 7692
Tssr7693 1 85709593 to 85709617 24 + TSS region transcription start site region 7693
A630001G21Rik 1 85717083 to 85736656 19573 - protein coding gene RIKEN cDNA A630001G21 gene
Tssr12731 1 85723819 to 85723824 5 - TSS region transcription start site region 12731
Tssr12732 1 85727000 to 85727021 21 - TSS region transcription start site region 12732
Tssr12733 1 85727084 to 85727099 15 - TSS region transcription start site region 12733
Tssr12734 1 85727157 to 85727179 22 - TSS region transcription start site region 12734
Tssr12735 1 85727186 to 85727199 13 - TSS region transcription start site region 12735
Tssr12736 1 85727239 to 85727254 15 - TSS region transcription start site region 12736
Tssr12737 1 85727482 to 85727504 22 - TSS region transcription start site region 12737
Tssr12738 1 85731153 to 85731159 6 - TSS region transcription start site region 12738
Tssr12739 1 85731196 to 85731242 46 - TSS region transcription start site region 12739
Tssr12740 1 85734479 to 85734483 4 - TSS region transcription start site region 12740
Tssr12741 1 85736525 to 85736624 99 - TSS region transcription start site region 12741
Mir8096 1 85751948 to 85752074 126 + miRNA gene microRNA 8096
Tssr12742 1 85752453 to 85752464 11 - TSS region transcription start site region 12742
Tssr12743 1 85752472 to 85752493 21 - TSS region transcription start site region 12743
Gm25472 1 85763794 to 85763871 77 + miRNA gene predicted gene, 25472
D1Mit81 1 85768306 to 85768487 181 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 81
9930111H07Rik 1 85775271 to 85784694 9423 + lincRNA gene RIKEN cDNA 9930111H07 gene
Tssr7694 1 85780068 to 85780084 16 + TSS region transcription start site region 7694
Gm22906 1 85784713 to 85784962 249 + unclassified non-coding RNA gene predicted gene, 22906
Cpgi493 1 85793165 to 85794572 1407 CpG island CpG island 493
Tssr7695 1 85793411 to 85793517 106 + TSS region transcription start site region 7695
Cab39 1 85793441 to 85851576 58135 + protein coding gene calcium binding protein 39
Tssr7696 1 85801893 to 85801897 4 + TSS region transcription start site region 7696
Led2 1 117267351 to 85768306 -31499045 QTL late embryonic death 2