Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:84738040-87298906

Filter by:
540 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Emo4 1 68032186 to 86307305 18275119 QTL emotionality 4
Sst1 1 81674399 to 87203100 5528701 QTL susceptibility to tuberculosis 1
Trip12 1 84721189 to 84840516 119327 - protein coding gene thyroid hormone receptor interactor 12
C130021H21Rik 1 84740929 to 84742044 1115 unclassified gene RIKEN cDNA C130021H21 gene
Tssr12691 1 84742014 to 84742018 4 - TSS region transcription start site region 12691
Tssr12692 1 84745161 to 84745200 39 - TSS region transcription start site region 12692
Tssr12693 1 84750537 to 84750540 3 - TSS region transcription start site region 12693
Tssr12694 1 84766030 to 84766055 25 - TSS region transcription start site region 12694
Tssr12695 1 84786126 to 84786135 9 - TSS region transcription start site region 12695
Gm38374 1 84807158 to 84809190 2032 - unclassified gene predicted gene, 38374
Tssr12696 1 84811654 to 84811658 4 - TSS region transcription start site region 12696
Tssr12697 1 84814880 to 84814895 15 - TSS region transcription start site region 12697
Gm37738 1 84819968 to 84824683 4715 - unclassified gene predicted gene, 37738
Tssr12698 1 84824918 to 84824920 2 - TSS region transcription start site region 12698
Tssr12699 1 84837796 to 84837809 13 - TSS region transcription start site region 12699
Tssr12700 1 84837829 to 84837840 11 - TSS region transcription start site region 12700
Cpgi485 1 84838328 to 84840412 2084 CpG island CpG island 485
Tssr12701 1 84838658 to 84838740 82 - TSS region transcription start site region 12701
Tssr12702 1 84838985 to 84839022 37 - TSS region transcription start site region 12702
Tssr12703 1 84839280 to 84839289 9 - TSS region transcription start site region 12703
Tssr12704 1 84839310 to 84839321 11 - TSS region transcription start site region 12704
Tssr12705 1 84839322 to 84839391 69 - TSS region transcription start site region 12705
Tssr12706 1 84839420 to 84839441 21 - TSS region transcription start site region 12706
Tssr12707 1 84839451 to 84839462 11 - TSS region transcription start site region 12707
Tssr7650 1 84839459 to 84839475 16 + TSS region transcription start site region 7650
Tssr12708 1 84839479 to 84839490 11 - TSS region transcription start site region 12708
Tssr12709 1 84839528 to 84839535 7 - TSS region transcription start site region 12709
Tssr12710 1 84839579 to 84839591 12 - TSS region transcription start site region 12710
Tssr7651 1 84839607 to 84839639 32 + TSS region transcription start site region 7651
Tssr12711 1 84839744 to 84839752 8 - TSS region transcription start site region 12711
Tssr7652 1 84839833 to 84839875 42 + TSS region transcription start site region 7652
Fbxo36 1 84839841 to 84900487 60646 + protein coding gene F-box protein 36
Tssr136 1 84839908 to 84839916 8 + TSS region transcription start site region 136
Tssr12712 1 84840193 to 84840202 9 - TSS region transcription start site region 12712
Tssr12713 1 84840231 to 84840246 15 - TSS region transcription start site region 12713
Tssr12714 1 84840258 to 84840274 16 - TSS region transcription start site region 12714
Tssr12715 1 84840286 to 84840325 39 - TSS region transcription start site region 12715
Tssr12716 1 84840465 to 84840479 14 - TSS region transcription start site region 12716
Tssr12717 1 84840502 to 84840540 38 - TSS region transcription start site region 12717
Tssr12718 1 84840596 to 84840612 16 - TSS region transcription start site region 12718
Tssr12719 1 84850000 to 84850014 14 - TSS region transcription start site region 12719
Tssr12720 1 84850036 to 84850045 9 - TSS region transcription start site region 12720
Tssr12721 1 84868229 to 84868233 4 - TSS region transcription start site region 12721
Tssr12722 1 84868959 to 84868996 37 - TSS region transcription start site region 12722
Tssr7653 1 84869146 to 84869163 17 + TSS region transcription start site region 7653
Tssr7654 1 84882129 to 84882175 46 + TSS region transcription start site region 7654
Tssr12723 1 84891886 to 84891925 39 - TSS region transcription start site region 12723
Slc16a14 1 84905898 to 84935134 29236 - protein coding gene solute carrier family 16 (monocarboxylic acid transporters), member 14
Cpgi486 1 84934239 to 84935155 916 CpG island CpG island 486
Tssr12724 1 84935089 to 84935108 19 - TSS region transcription start site region 12724
Tssr12725 1 84935190 to 84935241 51 - TSS region transcription start site region 12725
Gm39669 1 84935272 to 84936017 745 + lncRNA gene predicted gene, 39669
Tssr7655 1 84939321 to 84939343 22 + TSS region transcription start site region 7655
Tssr7656 1 84952714 to 84952719 5 + TSS region transcription start site region 7656
Gm15433 1 84963669 to 84964559 890 + pseudogene predicted pseudogene 15433
Gm29284 1 84990638 to 84993032 2394 - pseudogene predicted gene 29284
Tssr7657 1 85012078 to 85012085 7 + TSS region transcription start site region 7657
Rpl19-ps1 1 85012114 to 85012704 590 + pseudogene ribosomal protein L19, pseudogene 1
Gm27907 1 85012367 to 85012446 79 + miRNA gene predicted gene, 27907
Gm7582 1 85026363 to 85028872 2509 - pseudogene predicted gene 7582
Gm2389 1 85061151 to 85062639 1488 + pseudogene predicted pseudogene 2389
Gm18342 1 85067647 to 85078223 10576 - pseudogene predicted gene, 18342
A530032D15Rik 1 85088139 to 85110502 22363 - protein coding gene RIKEN cDNA A530032D15Rik gene
Gm10553 1 85100164 to 85100535 371 + protein coding gene predicted gene 10553
A530040E14Rik 1 85105946 to 85114035 8089 + antisense lncRNA gene RIKEN cDNA A530040E14 gene
Tssr7658 1 85106089 to 85106093 4 + TSS region transcription start site region 7658
Gm35498 1 85112445 to 85118523 6078 - protein coding gene predicted gene, 35498
Tssr12726 1 85112464 to 85112507 43 - TSS region transcription start site region 12726
Gm16038 1 85115319 to 85117237 1918 + pseudogene predicted gene 16038
Gm46097 1 85140080 to 85143762 3682 - pseudogene predicted gene, 46097
Gm38510 1 85156899 to 85309015 152116 - protein coding gene predicted gene, 38510
Gm6264 1 85159764 to 85194260 34496 + pseudogene predicted gene 6264
Tssr7659 1 85199595 to 85199622 27 + TSS region transcription start site region 7659
Gm7609 1 85199613 to 85213786 14173 + pseudogene predicted pseudogene 7609
C130026I21Rik 1 85241286 to 85270866 29580 - protein coding gene RIKEN cDNA C130026I21 gene
Gm16028 1 85246851 to 85255465 8614 + antisense lncRNA gene predicted gene 16028
Gm16026 1 85266698 to 85285491 18793 + pseudogene predicted pseudogene 16026
Cpgi487 1 85272300 to 85272500 200 CpG island CpG island 487
Tssr7660 1 85272400 to 85272416 16 + TSS region transcription start site region 7660
Tssr7661 1 85276899 to 85276947 48 + TSS region transcription start site region 7661
Cpgi488 1 85276973 to 85277154 181 CpG island CpG island 488
Gm2619 1 85313407 to 85317321 3914 - pseudogene predicted gene 2619
Tssr137 1 85326708 to 85326716 8 + TSS region transcription start site region 137
Gm16025 1 85326729 to 85342615 15886 + lincRNA gene predicted gene 16025
Tssr138 1 85330434 to 85330435 1 + TSS region transcription start site region 138
Gm7281 1 85332716 to 85342086 9370 - pseudogene predicted gene 7281
Gm2666 1 85484252 to 85485142 890 - pseudogene predicted gene 2666
Gm2427 1 85501090 to 85514604 13514 + pseudogene predicted gene 2427
Gm16092 1 85511133 to 85527161 16028 - lincRNA gene predicted gene 16092
Gm7592 1 85526690 to 85550577 23887 + pseudogene predicted gene 7592
D1Mit335 1 85528077 to 85528225 148 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 335
G530012D18Rik 1 85575676 to 85577295 1619 + protein coding gene RIKEN cDNA G530012D1 gene
Sp110 1 85576899 to 85598817 21918 - protein coding gene Sp110 nuclear body protein
Tssr12727 1 85591080 to 85591104 24 - TSS region transcription start site region 12727
Cpgi489 1 85591248 to 85591922 674 CpG island CpG island 489
Tssr12728 1 85591659 to 85591686 27 - TSS region transcription start site region 12728
Cpgi490 1 85592299 to 85592873 574 CpG island CpG island 490
Tssr7662 1 85598130 to 85598149 19 + TSS region transcription start site region 7662
Tssr12729 1 85598796 to 85598822 26 - TSS region transcription start site region 12729
Tssr7663 1 85599082 to 85599095 13 + TSS region transcription start site region 7663
Gm16094 1 85599286 to 85599839 553 + antisense lncRNA gene predicted gene 16094
Tssr7664 1 85600650 to 85600661 11 + TSS region transcription start site region 7664
Tssr7665 1 85600672 to 85600704 32 + TSS region transcription start site region 7665
Sp140 1 85600703 to 85645040 44337 + protein coding gene Sp140 nuclear body protein
Tssr7666 1 85600830 to 85600865 35 + TSS region transcription start site region 7666
Tssr7667 1 85600868 to 85600879 11 + TSS region transcription start site region 7667
Tssr7668 1 85601015 to 85601018 3 + TSS region transcription start site region 7668
Tssr7669 1 85601035 to 85601070 35 + TSS region transcription start site region 7669
Tssr12730 1 85604507 to 85604539 32 - TSS region transcription start site region 12730
Tssr7670 1 85608489 to 85608514 25 + TSS region transcription start site region 7670
Gm10552 1 85609572 to 85610850 1278 - antisense lncRNA gene predicted gene 10552
Tssr7671 1 85610860 to 85610871 11 + TSS region transcription start site region 7671
Gm17017 1 85641222 to 85650585 9363 - antisense lncRNA gene predicted gene 17017
Sp100 1 85649988 to 85709998 60010 + protein coding gene nuclear antigen Sp100
Tssr7672 1 85649997 to 85650004 7 + TSS region transcription start site region 7672
Tssr7673 1 85650008 to 85650020 12 + TSS region transcription start site region 7673
Tssr7674 1 85650027 to 85650042 15 + TSS region transcription start site region 7674
Tssr7675 1 85650044 to 85650052 8 + TSS region transcription start site region 7675
Tssr7676 1 85663546 to 85663572 26 + TSS region transcription start site region 7676
Tssr7677 1 85665272 to 85665322 50 + TSS region transcription start site region 7677
Tssr7678 1 85670078 to 85670090 12 + TSS region transcription start site region 7678
Tssr7679 1 85670912 to 85670919 7 + TSS region transcription start site region 7679
Tssr7680 1 85673706 to 85673723 17 + TSS region transcription start site region 7680
n-R5s215 1 85674882 to 85674985 103 + rRNA gene nuclear encoded rRNA 5S 215
Tssr7681 1 85681071 to 85681109 38 + TSS region transcription start site region 7681
Tssr7682 1 85682289 to 85682304 15 + TSS region transcription start site region 7682
Tssr7683 1 85682388 to 85682402 14 + TSS region transcription start site region 7683
Tssr7684 1 85682408 to 85682421 13 + TSS region transcription start site region 7684
Tssr7685 1 85685087 to 85685104 17 + TSS region transcription start site region 7685
Tssr7686 1 85688240 to 85688245 5 + TSS region transcription start site region 7686
Tssr139 1 85699533 to 85699538 5 + TSS region transcription start site region 139
Tssr7687 1 85699636 to 85699650 14 + TSS region transcription start site region 7687
Cpgi492 1 85703432 to 85703809 377 CpG island CpG island 492
Tssr7688 1 85708063 to 85708097 34 + TSS region transcription start site region 7688
Tssr7689 1 85709333 to 85709361 28 + TSS region transcription start site region 7689
Tssr7690 1 85709387 to 85709403 16 + TSS region transcription start site region 7690
Tssr7691 1 85709419 to 85709433 14 + TSS region transcription start site region 7691
Tssr7692 1 85709450 to 85709461 11 + TSS region transcription start site region 7692
Tssr7693 1 85709593 to 85709617 24 + TSS region transcription start site region 7693
A630001G21Rik 1 85717083 to 85736656 19573 - protein coding gene RIKEN cDNA A630001G21 gene
Tssr12731 1 85723819 to 85723824 5 - TSS region transcription start site region 12731
Tssr12732 1 85727000 to 85727021 21 - TSS region transcription start site region 12732
Tssr12733 1 85727084 to 85727099 15 - TSS region transcription start site region 12733
Tssr12734 1 85727157 to 85727179 22 - TSS region transcription start site region 12734
Tssr12735 1 85727186 to 85727199 13 - TSS region transcription start site region 12735
Tssr12736 1 85727239 to 85727254 15 - TSS region transcription start site region 12736
Tssr12737 1 85727482 to 85727504 22 - TSS region transcription start site region 12737
Tssr12738 1 85731153 to 85731159 6 - TSS region transcription start site region 12738
Tssr12739 1 85731196 to 85731242 46 - TSS region transcription start site region 12739
Tssr12740 1 85734479 to 85734483 4 - TSS region transcription start site region 12740
Tssr12741 1 85736525 to 85736624 99 - TSS region transcription start site region 12741
Mir8096 1 85751948 to 85752074 126 + miRNA gene microRNA 8096
Tssr12742 1 85752453 to 85752464 11 - TSS region transcription start site region 12742
Tssr12743 1 85752472 to 85752493 21 - TSS region transcription start site region 12743
Gm25472 1 85763794 to 85763871 77 + miRNA gene predicted gene, 25472
D1Mit81 1 85768306 to 85768487 181 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 81
9930111H07Rik 1 85775271 to 85784694 9423 + lincRNA gene RIKEN cDNA 9930111H07 gene
Tssr7694 1 85780068 to 85780084 16 + TSS region transcription start site region 7694
Gm22906 1 85784713 to 85784962 249 + unclassified non-coding RNA gene predicted gene, 22906
Cpgi493 1 85793165 to 85794572 1407 CpG island CpG island 493
Tssr7695 1 85793411 to 85793517 106 + TSS region transcription start site region 7695
Cab39 1 85793441 to 85851576 58135 + protein coding gene calcium binding protein 39
Tssr7696 1 85801893 to 85801897 4 + TSS region transcription start site region 7696
Tssr7697 1 85831940 to 85831944 4 + TSS region transcription start site region 7697
Tssr7698 1 85849210 to 85849242 32 + TSS region transcription start site region 7698
Tssr7699 1 85851435 to 85851460 25 + TSS region transcription start site region 7699
Tssr12744 1 85864601 to 85864615 14 - TSS region transcription start site region 12744
Itm2c 1 85894281 to 85908675 14394 + protein coding gene integral membrane protein 2C
Cpgi494 1 85894326 to 85895139 813 CpG island CpG island 494
Tssr7700 1 85894449 to 85894454 5 + TSS region transcription start site region 7700
Tssr7701 1 85894531 to 85894655 124 + TSS region transcription start site region 7701
Tssr12745 1 85895454 to 85895462 8 - TSS region transcription start site region 12745
Cpgi495 1 85895579 to 85895797 218 CpG island CpG island 495
Tssr7702 1 85903096 to 85903116 20 + TSS region transcription start site region 7702
Tssr7703 1 85904583 to 85904586 3 + TSS region transcription start site region 7703
Tssr7704 1 85906416 to 85906432 16 + TSS region transcription start site region 7704
Tssr7705 1 85907008 to 85907021 13 + TSS region transcription start site region 7705
Gm32302 1 85914822 to 85921555 6733 + lncRNA gene predicted gene, 32302
4933407L21Rik 1 85928483 to 85931756 3273 + protein coding gene RIKEN cDNA 4933407L21 gene
Tssr7706 1 85928879 to 85928903 24 + TSS region transcription start site region 7706
Gm28884 1 85933247 to 85937332 4085 - antisense lncRNA gene predicted gene 28884
Gpr55 1 85938318 to 85961007 22689 - protein coding gene G protein-coupled receptor 55
Tssr12746 1 85956738 to 85956747 9 - TSS region transcription start site region 12746
Gm41905 1 85957113 to 85973340 16227 + lncRNA gene predicted gene, 41905
Tssr7707 1 85957562 to 85957573 11 + TSS region transcription start site region 7707
Tssr12747 1 85959679 to 85959688 9 - TSS region transcription start site region 12747
Tssr12748 1 85961029 to 85961073 44 - TSS region transcription start site region 12748
Gm28100 1 85972365 to 85986917 14552 - lincRNA gene predicted gene 28100
Tssr12749 1 85986917 to 85986951 34 - TSS region transcription start site region 12749
Tssr12750 1 85991458 to 85991468 10 - TSS region transcription start site region 12750
Tssr12751 1 85991477 to 85991496 19 - TSS region transcription start site region 12751
Gm18180 1 86014403 to 86015886 1483 - pseudogene predicted gene, 18180
Spata3 1 86017841 to 86029958 12117 + protein coding gene spermatogenesis associated 3
Cpgi496 1 86018040 to 86018906 866 CpG island CpG island 496
Tssr7708 1 86018068 to 86018084 16 + TSS region transcription start site region 7708
Tssr12752 1 86021836 to 86021850 14 - TSS region transcription start site region 12752
Tssr7709 1 86021935 to 86021953 18 + TSS region transcription start site region 7709
Tssr7710 1 86021959 to 86021972 13 + TSS region transcription start site region 7710
Tssr7711 1 86022163 to 86022176 13 + TSS region transcription start site region 7711
Tssr7712 1 86026203 to 86026213 10 + TSS region transcription start site region 7712