Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:84695638-85288032

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dner 1 84369839 to 84696221 326382 - protein coding gene delta/notch-like EGF repeat containing
Cpgi484 1 84695227 to 84696453 1226 CpG island CpG island 484
Tssr12678 1 84695752 to 84695766 14 - TSS region transcription start site region 12678
Tssr12679 1 84695767 to 84695778 11 - TSS region transcription start site region 12679
Tssr12680 1 84695784 to 84695868 84 - TSS region transcription start site region 12680
Mir5126 1 84695839 to 84695915 76 + miRNA gene microRNA 5126
Tssr12681 1 84695872 to 84695892 20 - TSS region transcription start site region 12681
Tssr12682 1 84695976 to 84695994 18 - TSS region transcription start site region 12682
Tssr12683 1 84696006 to 84696015 9 - TSS region transcription start site region 12683
Tssr12684 1 84696027 to 84696038 11 - TSS region transcription start site region 12684
Tssr12685 1 84696106 to 84696122 16 - TSS region transcription start site region 12685
Tssr12686 1 84696133 to 84696138 5 - TSS region transcription start site region 12686
Tssr12687 1 84696148 to 84696159 11 - TSS region transcription start site region 12687
Tssr12688 1 84696166 to 84696178 12 - TSS region transcription start site region 12688
Tssr12689 1 84696182 to 84696202 20 - TSS region transcription start site region 12689
Tssr12690 1 84696247 to 84696261 14 - TSS region transcription start site region 12690
Tssr7649 1 84710354 to 84710383 29 + TSS region transcription start site region 7649
Trip12 1 84721189 to 84840516 119327 - protein coding gene thyroid hormone receptor interactor 12
C130021H21Rik 1 84740929 to 84742044 1115 unclassified gene RIKEN cDNA C130021H21 gene
Tssr12691 1 84742014 to 84742018 4 - TSS region transcription start site region 12691
Tssr12692 1 84745161 to 84745200 39 - TSS region transcription start site region 12692
Tssr12693 1 84750537 to 84750540 3 - TSS region transcription start site region 12693
Tssr12694 1 84766030 to 84766055 25 - TSS region transcription start site region 12694
Tssr12695 1 84786126 to 84786135 9 - TSS region transcription start site region 12695
Gm38374 1 84807158 to 84809190 2032 - unclassified gene predicted gene, 38374
Tssr12696 1 84811654 to 84811658 4 - TSS region transcription start site region 12696
Tssr12697 1 84814880 to 84814895 15 - TSS region transcription start site region 12697
Gm37738 1 84819968 to 84824683 4715 - unclassified gene predicted gene, 37738
Tssr12698 1 84824918 to 84824920 2 - TSS region transcription start site region 12698
Tssr12699 1 84837796 to 84837809 13 - TSS region transcription start site region 12699
Tssr12700 1 84837829 to 84837840 11 - TSS region transcription start site region 12700
Cpgi485 1 84838328 to 84840412 2084 CpG island CpG island 485
Tssr12701 1 84838658 to 84838740 82 - TSS region transcription start site region 12701
Tssr12702 1 84838985 to 84839022 37 - TSS region transcription start site region 12702
Tssr12703 1 84839280 to 84839289 9 - TSS region transcription start site region 12703
Tssr12704 1 84839310 to 84839321 11 - TSS region transcription start site region 12704
Tssr12705 1 84839322 to 84839391 69 - TSS region transcription start site region 12705
Tssr12706 1 84839420 to 84839441 21 - TSS region transcription start site region 12706
Tssr12707 1 84839451 to 84839462 11 - TSS region transcription start site region 12707
Tssr7650 1 84839459 to 84839475 16 + TSS region transcription start site region 7650
Tssr12708 1 84839479 to 84839490 11 - TSS region transcription start site region 12708
Tssr12709 1 84839528 to 84839535 7 - TSS region transcription start site region 12709
Tssr12710 1 84839579 to 84839591 12 - TSS region transcription start site region 12710
Tssr7651 1 84839607 to 84839639 32 + TSS region transcription start site region 7651
Tssr12711 1 84839744 to 84839752 8 - TSS region transcription start site region 12711
Tssr7652 1 84839833 to 84839875 42 + TSS region transcription start site region 7652
Fbxo36 1 84839841 to 84900487 60646 + protein coding gene F-box protein 36
Tssr136 1 84839908 to 84839916 8 + TSS region transcription start site region 136
Tssr12712 1 84840193 to 84840202 9 - TSS region transcription start site region 12712
Tssr12713 1 84840231 to 84840246 15 - TSS region transcription start site region 12713
Tssr12714 1 84840258 to 84840274 16 - TSS region transcription start site region 12714
Tssr12715 1 84840286 to 84840325 39 - TSS region transcription start site region 12715
Tssr12716 1 84840465 to 84840479 14 - TSS region transcription start site region 12716
Tssr12717 1 84840502 to 84840540 38 - TSS region transcription start site region 12717
Tssr12718 1 84840596 to 84840612 16 - TSS region transcription start site region 12718
Tssr12719 1 84850000 to 84850014 14 - TSS region transcription start site region 12719
Tssr12720 1 84850036 to 84850045 9 - TSS region transcription start site region 12720
Tssr12721 1 84868229 to 84868233 4 - TSS region transcription start site region 12721
Tssr12722 1 84868959 to 84868996 37 - TSS region transcription start site region 12722
Tssr7653 1 84869146 to 84869163 17 + TSS region transcription start site region 7653
Tssr7654 1 84882129 to 84882175 46 + TSS region transcription start site region 7654
Tssr12723 1 84891886 to 84891925 39 - TSS region transcription start site region 12723
Slc16a14 1 84905898 to 84935134 29236 - protein coding gene solute carrier family 16 (monocarboxylic acid transporters), member 14
Cpgi486 1 84934239 to 84935155 916 CpG island CpG island 486
Tssr12724 1 84935089 to 84935108 19 - TSS region transcription start site region 12724
Tssr12725 1 84935190 to 84935241 51 - TSS region transcription start site region 12725
Gm39669 1 84935272 to 84936017 745 + lncRNA gene predicted gene, 39669
Tssr7655 1 84939321 to 84939343 22 + TSS region transcription start site region 7655
Tssr7656 1 84952714 to 84952719 5 + TSS region transcription start site region 7656
Gm15433 1 84963669 to 84964559 890 + pseudogene predicted pseudogene 15433
Gm29284 1 84990638 to 84993032 2394 - pseudogene predicted gene 29284
Tssr7657 1 85012078 to 85012085 7 + TSS region transcription start site region 7657
Rpl19-ps1 1 85012114 to 85012704 590 + pseudogene ribosomal protein L19, pseudogene 1
Gm27907 1 85012367 to 85012446 79 + miRNA gene predicted gene, 27907
Gm7582 1 85026363 to 85028872 2509 - pseudogene predicted gene 7582
Gm2389 1 85061151 to 85062639 1488 + pseudogene predicted pseudogene 2389
Gm18342 1 85067647 to 85078223 10576 - pseudogene predicted gene, 18342
A530032D15Rik 1 85088139 to 85110502 22363 - protein coding gene RIKEN cDNA A530032D15Rik gene
Gm10553 1 85100164 to 85100535 371 + protein coding gene predicted gene 10553
A530040E14Rik 1 85105946 to 85114035 8089 + antisense lncRNA gene RIKEN cDNA A530040E14 gene
Tssr7658 1 85106089 to 85106093 4 + TSS region transcription start site region 7658
Gm35498 1 85112445 to 85118523 6078 - protein coding gene predicted gene, 35498
Tssr12726 1 85112464 to 85112507 43 - TSS region transcription start site region 12726
Gm16038 1 85115319 to 85117237 1918 + pseudogene predicted gene 16038
Gm46097 1 85140080 to 85143762 3682 - pseudogene predicted gene, 46097
Gm38510 1 85156899 to 85309015 152116 - protein coding gene predicted gene, 38510
Gm6264 1 85159764 to 85194260 34496 + pseudogene predicted gene 6264
Tssr7659 1 85199595 to 85199622 27 + TSS region transcription start site region 7659
Gm7609 1 85199613 to 85213786 14173 + pseudogene predicted pseudogene 7609
C130026I21Rik 1 85241286 to 85270866 29580 - protein coding gene RIKEN cDNA C130026I21 gene
Gm16028 1 85246851 to 85255465 8614 + antisense lncRNA gene predicted gene 16028
Gm16026 1 85266698 to 85285491 18793 + pseudogene predicted pseudogene 16026
Cpgi487 1 85272300 to 85272500 200 CpG island CpG island 487
Tssr7660 1 85272400 to 85272416 16 + TSS region transcription start site region 7660
Tssr7661 1 85276899 to 85276947 48 + TSS region transcription start site region 7661
Cpgi488 1 85276973 to 85277154 181 CpG island CpG island 488