Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:84264459-85414475

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132 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pid1 1 84036293 to 84339845 303552 - protein coding gene phosphotyrosine interaction domain containing 1
Tssr12654 1 84275088 to 84275114 26 - TSS region transcription start site region 12654
Tssr7647 1 84276891 to 84276894 3 + TSS region transcription start site region 7647
Tssr12655 1 84278295 to 84278320 25 - TSS region transcription start site region 12655
Tssr12656 1 84278343 to 84278379 36 - TSS region transcription start site region 12656
Tssr12657 1 84278417 to 84278436 19 - TSS region transcription start site region 12657
Tssr12658 1 84278446 to 84278459 13 - TSS region transcription start site region 12658
Tssr12659 1 84278473 to 84278486 13 - TSS region transcription start site region 12659
Tssr12660 1 84278919 to 84278932 13 - TSS region transcription start site region 12660
Tssr12661 1 84279931 to 84279942 11 - TSS region transcription start site region 12661
Tssr12662 1 84281937 to 84281949 12 - TSS region transcription start site region 12662
Tssr12663 1 84281986 to 84282000 14 - TSS region transcription start site region 12663
Tssr12664 1 84282881 to 84282890 9 - TSS region transcription start site region 12664
Cpgi483 1 84283998 to 84284886 888 CpG island CpG island 483
Tssr12665 1 84284478 to 84284489 11 - TSS region transcription start site region 12665
Tssr12666 1 84284526 to 84284537 11 - TSS region transcription start site region 12666
Tssr12667 1 84284548 to 84284628 80 - TSS region transcription start site region 12667
Tssr12668 1 84284818 to 84284856 38 - TSS region transcription start site region 12668
Tssr12669 1 84341077 to 84341097 20 - TSS region transcription start site region 12669
Tssr7648 1 84362664 to 84362670 6 + TSS region transcription start site region 7648
Tssr12670 1 84363250 to 84363259 9 - TSS region transcription start site region 12670
Tssr12671 1 84363281 to 84363298 17 - TSS region transcription start site region 12671
Tssr12672 1 84363774 to 84363785 11 - TSS region transcription start site region 12672
Tssr12673 1 84363796 to 84363808 12 - TSS region transcription start site region 12673
Dner 1 84369839 to 84696221 326382 - protein coding gene delta/notch-like EGF repeat containing
Tssr12674 1 84370501 to 84370504 3 - TSS region transcription start site region 12674
Gm37959 1 84392503 to 84395399 2896 - unclassified gene predicted gene, 37959
D1Mit438 1 84577256 to 84577377 121 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 438
Tssr12675 1 84580699 to 84580710 11 - TSS region transcription start site region 12675
Gm37925 1 84665189 to 84669443 4254 - unclassified gene predicted gene, 37925
Tssr12676 1 84669417 to 84669421 4 - TSS region transcription start site region 12676
Cpgi484 1 84695227 to 84696453 1226 CpG island CpG island 484
Tssr12677 1 84695552 to 84695563 11 - TSS region transcription start site region 12677
Tssr12678 1 84695752 to 84695766 14 - TSS region transcription start site region 12678
Tssr12679 1 84695767 to 84695778 11 - TSS region transcription start site region 12679
Tssr12680 1 84695784 to 84695868 84 - TSS region transcription start site region 12680
Mir5126 1 84695839 to 84695915 76 + miRNA gene microRNA 5126
Tssr12681 1 84695872 to 84695892 20 - TSS region transcription start site region 12681
Tssr12682 1 84695976 to 84695994 18 - TSS region transcription start site region 12682
Tssr12683 1 84696006 to 84696015 9 - TSS region transcription start site region 12683
Tssr12684 1 84696027 to 84696038 11 - TSS region transcription start site region 12684
Tssr12685 1 84696106 to 84696122 16 - TSS region transcription start site region 12685
Tssr12686 1 84696133 to 84696138 5 - TSS region transcription start site region 12686
Tssr12687 1 84696148 to 84696159 11 - TSS region transcription start site region 12687
Tssr12688 1 84696166 to 84696178 12 - TSS region transcription start site region 12688
Tssr12689 1 84696182 to 84696202 20 - TSS region transcription start site region 12689
Tssr12690 1 84696247 to 84696261 14 - TSS region transcription start site region 12690
Tssr7649 1 84710354 to 84710383 29 + TSS region transcription start site region 7649
Trip12 1 84721189 to 84840516 119327 - protein coding gene thyroid hormone receptor interactor 12
C130021H21Rik 1 84740929 to 84742044 1115 unclassified gene RIKEN cDNA C130021H21 gene
Tssr12691 1 84742014 to 84742018 4 - TSS region transcription start site region 12691
Tssr12692 1 84745161 to 84745200 39 - TSS region transcription start site region 12692
Tssr12693 1 84750537 to 84750540 3 - TSS region transcription start site region 12693
Tssr12694 1 84766030 to 84766055 25 - TSS region transcription start site region 12694
Tssr12695 1 84786126 to 84786135 9 - TSS region transcription start site region 12695
Gm38374 1 84807158 to 84809190 2032 - unclassified gene predicted gene, 38374
Tssr12696 1 84811654 to 84811658 4 - TSS region transcription start site region 12696
Tssr12697 1 84814880 to 84814895 15 - TSS region transcription start site region 12697
Gm37738 1 84819968 to 84824683 4715 - unclassified gene predicted gene, 37738
Tssr12698 1 84824918 to 84824920 2 - TSS region transcription start site region 12698
Tssr12699 1 84837796 to 84837809 13 - TSS region transcription start site region 12699
Tssr12700 1 84837829 to 84837840 11 - TSS region transcription start site region 12700
Cpgi485 1 84838328 to 84840412 2084 CpG island CpG island 485
Tssr12701 1 84838658 to 84838740 82 - TSS region transcription start site region 12701
Tssr12702 1 84838985 to 84839022 37 - TSS region transcription start site region 12702
Tssr12703 1 84839280 to 84839289 9 - TSS region transcription start site region 12703
Tssr12704 1 84839310 to 84839321 11 - TSS region transcription start site region 12704
Tssr12705 1 84839322 to 84839391 69 - TSS region transcription start site region 12705
Tssr12706 1 84839420 to 84839441 21 - TSS region transcription start site region 12706
Tssr12707 1 84839451 to 84839462 11 - TSS region transcription start site region 12707
Tssr7650 1 84839459 to 84839475 16 + TSS region transcription start site region 7650
Tssr12708 1 84839479 to 84839490 11 - TSS region transcription start site region 12708
Tssr12709 1 84839528 to 84839535 7 - TSS region transcription start site region 12709
Tssr12710 1 84839579 to 84839591 12 - TSS region transcription start site region 12710
Tssr7651 1 84839607 to 84839639 32 + TSS region transcription start site region 7651
Tssr12711 1 84839744 to 84839752 8 - TSS region transcription start site region 12711
Tssr7652 1 84839833 to 84839875 42 + TSS region transcription start site region 7652
Fbxo36 1 84839841 to 84900487 60646 + protein coding gene F-box protein 36
Tssr136 1 84839908 to 84839916 8 + TSS region transcription start site region 136
Tssr12712 1 84840193 to 84840202 9 - TSS region transcription start site region 12712
Tssr12713 1 84840231 to 84840246 15 - TSS region transcription start site region 12713
Tssr12714 1 84840258 to 84840274 16 - TSS region transcription start site region 12714
Tssr12715 1 84840286 to 84840325 39 - TSS region transcription start site region 12715
Tssr12716 1 84840465 to 84840479 14 - TSS region transcription start site region 12716
Tssr12717 1 84840502 to 84840540 38 - TSS region transcription start site region 12717
Tssr12718 1 84840596 to 84840612 16 - TSS region transcription start site region 12718
Tssr12719 1 84850000 to 84850014 14 - TSS region transcription start site region 12719
Tssr12720 1 84850036 to 84850045 9 - TSS region transcription start site region 12720
Tssr12721 1 84868229 to 84868233 4 - TSS region transcription start site region 12721
Tssr12722 1 84868959 to 84868996 37 - TSS region transcription start site region 12722
Tssr7653 1 84869146 to 84869163 17 + TSS region transcription start site region 7653
Tssr7654 1 84882129 to 84882175 46 + TSS region transcription start site region 7654
Tssr12723 1 84891886 to 84891925 39 - TSS region transcription start site region 12723
Slc16a14 1 84905898 to 84935134 29236 - protein coding gene solute carrier family 16 (monocarboxylic acid transporters), member 14
Cpgi486 1 84934239 to 84935155 916 CpG island CpG island 486
Tssr12724 1 84935089 to 84935108 19 - TSS region transcription start site region 12724
Tssr12725 1 84935190 to 84935241 51 - TSS region transcription start site region 12725
Gm39669 1 84935272 to 84936017 745 + lncRNA gene predicted gene, 39669
Tssr7655 1 84939321 to 84939343 22 + TSS region transcription start site region 7655
Tssr7656 1 84952714 to 84952719 5 + TSS region transcription start site region 7656
Gm15433 1 84963669 to 84964559 890 + pseudogene predicted pseudogene 15433
Gm29284 1 84990638 to 84993032 2394 - pseudogene predicted gene 29284
Tssr7657 1 85012078 to 85012085 7 + TSS region transcription start site region 7657
Rpl19-ps1 1 85012114 to 85012704 590 + pseudogene ribosomal protein L19, pseudogene 1
Gm27907 1 85012367 to 85012446 79 + miRNA gene predicted gene, 27907
Gm7582 1 85026363 to 85028872 2509 - pseudogene predicted gene 7582
Gm2389 1 85061151 to 85062639 1488 + pseudogene predicted pseudogene 2389
Gm18342 1 85067647 to 85078223 10576 - pseudogene predicted gene, 18342
A530032D15Rik 1 85088139 to 85110502 22363 - protein coding gene RIKEN cDNA A530032D15Rik gene
Gm10553 1 85100164 to 85100535 371 + protein coding gene predicted gene 10553
A530040E14Rik 1 85105946 to 85114035 8089 + antisense lncRNA gene RIKEN cDNA A530040E14 gene
Tssr7658 1 85106089 to 85106093 4 + TSS region transcription start site region 7658
Gm35498 1 85112445 to 85118523 6078 - protein coding gene predicted gene, 35498
Tssr12726 1 85112464 to 85112507 43 - TSS region transcription start site region 12726
Gm16038 1 85115319 to 85117237 1918 + pseudogene predicted gene 16038
Gm46097 1 85140080 to 85143762 3682 - pseudogene predicted gene, 46097
Gm38510 1 85156899 to 85309015 152116 - protein coding gene predicted gene, 38510
Gm6264 1 85159764 to 85194260 34496 + pseudogene predicted gene 6264
Tssr7659 1 85199595 to 85199622 27 + TSS region transcription start site region 7659
Gm7609 1 85199613 to 85213786 14173 + pseudogene predicted pseudogene 7609
C130026I21Rik 1 85241286 to 85270866 29580 - protein coding gene RIKEN cDNA C130026I21 gene
Gm16028 1 85246851 to 85255465 8614 + antisense lncRNA gene predicted gene 16028
Gm16026 1 85266698 to 85285491 18793 + pseudogene predicted pseudogene 16026
Cpgi487 1 85272300 to 85272500 200 CpG island CpG island 487
Tssr7660 1 85272400 to 85272416 16 + TSS region transcription start site region 7660
Tssr7661 1 85276899 to 85276947 48 + TSS region transcription start site region 7661
Cpgi488 1 85276973 to 85277154 181 CpG island CpG island 488
Gm2619 1 85313407 to 85317321 3914 - pseudogene predicted gene 2619
Tssr137 1 85326708 to 85326716 8 + TSS region transcription start site region 137
Gm16025 1 85326729 to 85342615 15886 + lincRNA gene predicted gene 16025
Tssr138 1 85330434 to 85330435 1 + TSS region transcription start site region 138
Gm7281 1 85332716 to 85342086 9370 - pseudogene predicted gene 7281