Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:82827228-83727242

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dbf 1 59898872 to 82966353 23067481 heritable phenotypic marker doublefoot
Gm34450 1 82824279 to 82836055 11776 + lncRNA gene predicted gene, 34450
Tssr12528 1 82832491 to 82832494 3 - TSS region transcription start site region 12528
Tssr12529 1 82832588 to 82832597 9 - TSS region transcription start site region 12529
Gm46096 1 82837681 to 82839350 1669 - lncRNA gene predicted gene, 46096
Cpgi478 1 82839054 to 82840410 1356 CpG island CpG island 478
Gm22396 1 82839446 to 82839498 52 + miRNA gene predicted gene, 22396
Tssr7632 1 82839449 to 82839518 69 + TSS region transcription start site region 7632
Agfg1 1 82839460 to 82901001 61541 + protein coding gene ArfGAP with FG repeats 1
Tssr7633 1 82839560 to 82839571 11 + TSS region transcription start site region 7633
Tssr7634 1 82839651 to 82839684 33 + TSS region transcription start site region 7634
Tssr7635 1 82840155 to 82840171 16 + TSS region transcription start site region 7635
Tssr7636 1 82851201 to 82851209 8 + TSS region transcription start site region 7636
Tssr7637 1 82858359 to 82858409 50 + TSS region transcription start site region 7637
D1Ertd564e 1 82881046 to 82881278 232 DNA segment DNA segment, Chr 1, ERATO Doi 564, expressed
Tssr7638 1 82913322 to 82913329 7 + TSS region transcription start site region 7638
A030005L19Rik 1 82913325 to 82914130 805 + protein coding gene RIKEN cDNA A030005L19 gene
Tssr7639 1 82924915 to 82924917 2 + TSS region transcription start site region 7639
A030014E15Rik 1 82924917 to 82925712 795 + protein coding gene RIKEN cDNA A030014E15 gene
Tssr7640 1 82925381 to 82925390 9 + TSS region transcription start site region 7640
Gm6217 1 82930571 to 82931399 828 - protein coding gene predicted gene 6217
A030003K21Rik 1 82942559 to 82943388 829 - protein coding gene RIKEN cDNA A030003K21 gene
Gm7544 1 82955186 to 82956013 827 - protein coding gene predicted gene 7544
Gm47955 1 82960286 to 82960924 638 + protein coding gene predicted gene, 47955
D1Mit8 1 82966131 to 82966353 222 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 8
Tssr12530 1 82994741 to 82994744 3 - TSS region transcription start site region 12530
Gm47959 1 83000548 to 83001480 932 + protein coding gene predicted gene, 47959
Gm7553 1 83003482 to 83004907 1425 - pseudogene predicted gene 7553
Cpgi479 1 83004530 to 83004726 196 CpG island CpG island 479
Slc19a3 1 83012523 to 83038448 25925 - protein coding gene solute carrier family 19, member 3
Tssr7641 1 83015349 to 83015382 33 + TSS region transcription start site region 7641
Gm7539 1 83015393 to 83016022 629 + pseudogene predicted gene 7539
Cpgi480 1 83038135 to 83038381 246 CpG island CpG island 480
Tssr12531 1 83038411 to 83038422 11 - TSS region transcription start site region 12531
Tssr12532 1 83038432 to 83038459 27 - TSS region transcription start site region 12532
Tssr12533 1 83038821 to 83038825 4 - TSS region transcription start site region 12533
Krtap28-10 1 83041524 to 83042480 956 - protein coding gene keratin associated protein 28-10
Gm47969 1 83044932 to 83045946 1014 + protein coding gene predicted gene, 47969
A030005K14Rik 1 83058286 to 83059378 1092 - unclassified non-coding RNA gene RIKEN cDNA A030005K14 gene
Tssr12534 1 83059369 to 83059377 8 - TSS region transcription start site region 12534
Tssr7642 1 83060927 to 83060933 6 + TSS region transcription start site region 7642
Krtap28-13 1 83060930 to 83061921 991 + protein coding gene keratin associated protein 28-13
Gm29518 1 83067102 to 83067473 371 + pseudogene predicted gene 29518
Tssr7643 1 83116760 to 83116776 16 + TSS region transcription start site region 7643
Ccl20 1 83116766 to 83119167 2401 + protein coding gene chemokine (C-C motif) ligand 20
Gm29519 1 83157984 to 83159017 1033 + pseudogene predicted gene 29519
Cpgi481 1 83159658 to 83159924 266 CpG island CpG island 481
Tssr7644 1 83159733 to 83159773 40 + TSS region transcription start site region 7644
Daw1 1 83159752 to 83210574 50822 + protein coding gene dynein assembly factor with WDR repeat domains 1
Gm6244 1 83212047 to 83212884 837 - pseudogene predicted gene 6244
n-R5s214 1 83216671 to 83216791 120 - rRNA gene nuclear encoded rRNA 5S 214
Sphkap 1 83255442 to 83408393 152951 - protein coding gene SPHK1 interactor, AKAP domain containing
Tssr12535 1 83277106 to 83277145 39 - TSS region transcription start site region 12535
Tssr12536 1 83277148 to 83277164 16 - TSS region transcription start site region 12536
Tssr12537 1 83277201 to 83277212 11 - TSS region transcription start site region 12537
Tssr12538 1 83277228 to 83277242 14 - TSS region transcription start site region 12538
Tssr12539 1 83277332 to 83277344 12 - TSS region transcription start site region 12539
Tssr12540 1 83278796 to 83278828 32 - TSS region transcription start site region 12540
Tssr7645 1 83314451 to 83314471 20 + TSS region transcription start site region 7645
Gm6374 1 83314513 to 83315300 787 + pseudogene predicted gene 6374
Gm37517 1 83331298 to 83332586 1288 - unclassified gene predicted gene, 37517
Cpgi482 1 83407878 to 83408309 431 CpG island CpG island 482
Tssr12541 1 83408030 to 83408040 10 - TSS region transcription start site region 12541
Tssr12542 1 83408058 to 83408152 94 - TSS region transcription start site region 12542
Tssr12543 1 83408159 to 83408181 22 - TSS region transcription start site region 12543
Tssr12544 1 83408190 to 83408222 32 - TSS region transcription start site region 12544
Tssr12545 1 83408267 to 83408290 23 - TSS region transcription start site region 12545
Gm37989 1 83426596 to 83427398 802 - unclassified gene predicted gene, 37989
4933436I20Rik 1 83659550 to 83911644 252094 - lincRNA gene RIKEN cDNA 4933436I20 gene
D1Mit384 1 83666892 to 83667015 123 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 384
D1Mit255 1 83694017 to 83694157 140 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 255