Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:82689460-83051001

69 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Dbf	1	59898872 to 82966353	23067481		heritable phenotypic marker	doublefoot
Col4a3	1	82586921 to 82722059	135138	+	protein coding gene	collagen, type IV, alpha 3
C430014B12Rik	1	82691928 to 82725169	33241	-	lncRNA gene	RIKEN cDNA C430014B12 gene
D1Mit254	1	82701306 to 82701405	99		DNA segment	DNA segment, Chr 1, Massachusetts Institute of Technology 254
Tssr7623	1	82718932 to 82718938	6	+	TSS region	transcription start site region 7623
Cpgi477	1	82724730 to 82725666	936		CpG island	CpG island 477
Tssr7624	1	82724881 to 82724895	14	+	TSS region	transcription start site region 7624
Mff	1	82724890 to 82752390	27500	+	protein coding gene	mitochondrial fission factor
Tssr7625	1	82724909 to 82724943	34	+	TSS region	transcription start site region 7625
Tssr7626	1	82724964 to 82724968	4	+	TSS region	transcription start site region 7626
Gm28941	1	82739691 to 82740707	1016	+	sense intronic lncRNA gene	predicted gene 28941
Gm39668	1	82741983 to 82744788	2805	+	lncRNA gene	predicted gene, 39668
Tm4sf20	1	82756649 to 82768456	11807	-	protein coding gene	transmembrane 4 L six family member 20
Tssr12522	1	82767211 to 82767215	4	-	TSS region	transcription start site region 12522
Tssr12523	1	82768449 to 82768465	16	-	TSS region	transcription start site region 12523
Gm47791	1	82770824 to 82771243	419	-	protein coding gene	predicted gene, 47791
Tssr12524	1	82771307 to 82771310	3	-	TSS region	transcription start site region 12524
Gm19257	1	82777028 to 82777210	182	-	pseudogene	predicted gene, 19257
D1Mit383	1	82778395 to 82778517	122		DNA segment	DNA segment, Chr 1, Massachusetts Institute of Technology 383
Tssr7627	1	82785937 to 82785939	2	+	TSS region	transcription start site region 7627
Tssr134	1	82796253 to 82796258	5	-	TSS region	transcription start site region 134
Tssr12525	1	82798450 to 82798462	12	-	TSS region	transcription start site region 12525
Gm36999	1	82806423 to 82807468	1045	-	unclassified gene	predicted gene, 36999
Gm34286	1	82808981 to 82816424	7443	+	lncRNA gene	predicted gene, 34286
Tssr12526	1	82810606 to 82810611	5	-	TSS region	transcription start site region 12526
Tssr7628	1	82819655 to 82819665	10	+	TSS region	transcription start site region 7628
Gm28942	1	82819835 to 82820377	542	+	lincRNA gene	predicted gene 28942
Tssr7629	1	82820120 to 82820125	5	+	TSS region	transcription start site region 7629
Tssr7630	1	82821712 to 82821716	4	+	TSS region	transcription start site region 7630
Gm17764	1	82822471 to 82822861	390	-	pseudogene	predicted gene, 17764
Gm34450	1	82824279 to 82836055	11776	+	lncRNA gene	predicted gene, 34450
Tssr7631	1	82824945 to 82824953	8	+	TSS region	transcription start site region 7631
Tssr12527	1	82827007 to 82827011	4	-	TSS region	transcription start site region 12527
Tssr12528	1	82832491 to 82832494	3	-	TSS region	transcription start site region 12528
Tssr12529	1	82832588 to 82832597	9	-	TSS region	transcription start site region 12529
Gm46096	1	82837681 to 82839350	1669	-	lncRNA gene	predicted gene, 46096
Cpgi478	1	82839054 to 82840410	1356		CpG island	CpG island 478
Gm22396	1	82839446 to 82839498	52	+	miRNA gene	predicted gene, 22396
Tssr7632	1	82839449 to 82839518	69	+	TSS region	transcription start site region 7632
Agfg1	1	82839460 to 82901001	61541	+	protein coding gene	ArfGAP with FG repeats 1
Tssr7633	1	82839560 to 82839571	11	+	TSS region	transcription start site region 7633
Tssr7634	1	82839651 to 82839684	33	+	TSS region	transcription start site region 7634
Tssr7635	1	82840155 to 82840171	16	+	TSS region	transcription start site region 7635
Tssr7636	1	82851201 to 82851209	8	+	TSS region	transcription start site region 7636
Tssr7637	1	82858359 to 82858409	50	+	TSS region	transcription start site region 7637
D1Ertd564e	1	82881046 to 82881278	232		DNA segment	DNA segment, Chr 1, ERATO Doi 564, expressed
Tssr7638	1	82913322 to 82913329	7	+	TSS region	transcription start site region 7638
A030005L19Rik	1	82913325 to 82914130	805	+	protein coding gene	RIKEN cDNA A030005L19 gene
Tssr7639	1	82924915 to 82924917	2	+	TSS region	transcription start site region 7639
A030014E15Rik	1	82924917 to 82925712	795	+	protein coding gene	RIKEN cDNA A030014E15 gene
Tssr7640	1	82925381 to 82925390	9	+	TSS region	transcription start site region 7640
Gm6217	1	82930571 to 82931399	828	-	protein coding gene	predicted gene 6217
A030003K21Rik	1	82942559 to 82943388	829	-	protein coding gene	RIKEN cDNA A030003K21 gene
Gm7544	1	82955186 to 82956013	827	-	protein coding gene	predicted gene 7544
Gm47955	1	82960286 to 82960924	638	+	protein coding gene	predicted gene, 47955
D1Mit8	1	82966131 to 82966353	222		DNA segment	DNA segment, Chr 1, Massachusetts Institute of Technology 8
Tssr12530	1	82994741 to 82994744	3	-	TSS region	transcription start site region 12530
Gm47959	1	83000548 to 83001480	932	+	protein coding gene	predicted gene, 47959
Gm7553	1	83003482 to 83004907	1425	-	pseudogene	predicted gene 7553
Cpgi479	1	83004530 to 83004726	196		CpG island	CpG island 479
Slc19a3	1	83012523 to 83038448	25925	-	protein coding gene	solute carrier family 19, member 3
Tssr7641	1	83015349 to 83015382	33	+	TSS region	transcription start site region 7641
Gm7539	1	83015393 to 83016022	629	+	pseudogene	predicted gene 7539
Cpgi480	1	83038135 to 83038381	246		CpG island	CpG island 480
Tssr12531	1	83038411 to 83038422	11	-	TSS region	transcription start site region 12531
Tssr12532	1	83038432 to 83038459	27	-	TSS region	transcription start site region 12532
Tssr12533	1	83038821 to 83038825	4	-	TSS region	transcription start site region 12533
Krtap28-10	1	83041524 to 83042480	956	-	protein coding gene	keratin associated protein 28-10
Gm47969	1	83044932 to 83045946	1014	+	protein coding gene	predicted gene, 47969