Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:82609890-82867390

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Col4a3 1 82586921 to 82722059 135138 + protein coding gene collagen, type IV, alpha 3
n-R5s213 1 82635013 to 82635110 97 + rRNA gene nuclear encoded rRNA 5S 213
D1Mit382 1 82665468 to 82665568 100 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 382
Tssr7622 1 82676384 to 82676390 6 + TSS region transcription start site region 7622
C430014B12Rik 1 82691928 to 82725169 33241 - lncRNA gene RIKEN cDNA C430014B12 gene
D1Mit254 1 82701306 to 82701405 99 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 254
Tssr7623 1 82718932 to 82718938 6 + TSS region transcription start site region 7623
Cpgi477 1 82724730 to 82725666 936 CpG island CpG island 477
Tssr7624 1 82724881 to 82724895 14 + TSS region transcription start site region 7624
Mff 1 82724890 to 82752390 27500 + protein coding gene mitochondrial fission factor
Tssr7625 1 82724909 to 82724943 34 + TSS region transcription start site region 7625
Tssr7626 1 82724964 to 82724968 4 + TSS region transcription start site region 7626
Gm28941 1 82739691 to 82740707 1016 + sense intronic lncRNA gene predicted gene 28941
Gm39668 1 82741983 to 82744788 2805 + lncRNA gene predicted gene, 39668
Tm4sf20 1 82756649 to 82768456 11807 - protein coding gene transmembrane 4 L six family member 20
Tssr12522 1 82767211 to 82767215 4 - TSS region transcription start site region 12522
Tssr12523 1 82768449 to 82768465 16 - TSS region transcription start site region 12523
Gm47791 1 82770824 to 82771243 419 - protein coding gene predicted gene, 47791
Tssr12524 1 82771307 to 82771310 3 - TSS region transcription start site region 12524
Gm19257 1 82777028 to 82777210 182 - pseudogene predicted gene, 19257
D1Mit383 1 82778395 to 82778517 122 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 383
Tssr7627 1 82785937 to 82785939 2 + TSS region transcription start site region 7627
Tssr134 1 82796253 to 82796258 5 - TSS region transcription start site region 134
Tssr12525 1 82798450 to 82798462 12 - TSS region transcription start site region 12525
Gm36999 1 82806423 to 82807468 1045 - unclassified gene predicted gene, 36999
Gm34286 1 82808981 to 82816424 7443 + lncRNA gene predicted gene, 34286
Tssr12526 1 82810606 to 82810611 5 - TSS region transcription start site region 12526
Tssr7628 1 82819655 to 82819665 10 + TSS region transcription start site region 7628
Gm28942 1 82819835 to 82820377 542 + lincRNA gene predicted gene 28942
Tssr7629 1 82820120 to 82820125 5 + TSS region transcription start site region 7629
Tssr7630 1 82821712 to 82821716 4 + TSS region transcription start site region 7630
Gm17764 1 82822471 to 82822861 390 - pseudogene predicted gene, 17764
Gm34450 1 82824279 to 82836055 11776 + lncRNA gene predicted gene, 34450
Tssr7631 1 82824945 to 82824953 8 + TSS region transcription start site region 7631
Tssr12527 1 82827007 to 82827011 4 - TSS region transcription start site region 12527
Tssr12528 1 82832491 to 82832494 3 - TSS region transcription start site region 12528
Tssr12529 1 82832588 to 82832597 9 - TSS region transcription start site region 12529
Gm46096 1 82837681 to 82839350 1669 - lncRNA gene predicted gene, 46096
Cpgi478 1 82839054 to 82840410 1356 CpG island CpG island 478
Gm22396 1 82839446 to 82839498 52 + miRNA gene predicted gene, 22396
Tssr7632 1 82839449 to 82839518 69 + TSS region transcription start site region 7632
Agfg1 1 82839460 to 82901001 61541 + protein coding gene ArfGAP with FG repeats 1
Tssr7633 1 82839560 to 82839571 11 + TSS region transcription start site region 7633
Tssr7634 1 82839651 to 82839684 33 + TSS region transcription start site region 7634
Tssr7635 1 82840155 to 82840171 16 + TSS region transcription start site region 7635
Tssr7636 1 82851201 to 82851209 8 + TSS region transcription start site region 7636
Tssr7637 1 82858359 to 82858409 50 + TSS region transcription start site region 7637
Popoa 1 135687641 to 82665468 -53022173 QTL premature ovulation and primary oocyte arrest