Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:82581596-84272398

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239 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dbf 1 59898872 to 82966353 23067481 heritable phenotypic marker doublefoot
Col4a4 1 82448423 to 82586849 138426 - protein coding gene collagen, type IV, alpha 4
D1Mit44 1 82584937 to 82585122 185 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 44
Cpgi476 1 82586570 to 82587405 835 CpG island CpG island 476
Tssr12516 1 82586747 to 82586758 11 - TSS region transcription start site region 12516
Tssr12517 1 82586760 to 82586779 19 - TSS region transcription start site region 12517
Tssr12518 1 82586781 to 82586842 61 - TSS region transcription start site region 12518
Tssr12519 1 82586856 to 82586863 7 - TSS region transcription start site region 12519
Tssr7615 1 82586909 to 82586938 29 + TSS region transcription start site region 7615
Col4a3 1 82586921 to 82722059 135138 + protein coding gene collagen, type IV, alpha 3
Tssr7616 1 82586942 to 82586988 46 + TSS region transcription start site region 7616
Tssr12520 1 82587034 to 82587055 21 - TSS region transcription start site region 12520
Tssr12521 1 82587057 to 82587079 22 - TSS region transcription start site region 12521
Tssr7617 1 82587143 to 82587156 13 + TSS region transcription start site region 7617
Tssr7618 1 82587173 to 82587192 19 + TSS region transcription start site region 7618
Tssr133 1 82587200 to 82587205 5 + TSS region transcription start site region 133
Tssr7619 1 82587227 to 82587236 9 + TSS region transcription start site region 7619
Tssr7620 1 82604046 to 82604057 11 + TSS region transcription start site region 7620
Tssr7621 1 82604073 to 82604093 20 + TSS region transcription start site region 7621
n-R5s213 1 82635013 to 82635110 97 + rRNA gene nuclear encoded rRNA 5S 213
D1Mit382 1 82665468 to 82665568 100 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 382
Tssr7622 1 82676384 to 82676390 6 + TSS region transcription start site region 7622
C430014B12Rik 1 82691928 to 82725169 33241 - lncRNA gene RIKEN cDNA C430014B12 gene
D1Mit254 1 82701306 to 82701405 99 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 254
Tssr7623 1 82718932 to 82718938 6 + TSS region transcription start site region 7623
Cpgi477 1 82724730 to 82725666 936 CpG island CpG island 477
Tssr7624 1 82724881 to 82724895 14 + TSS region transcription start site region 7624
Mff 1 82724890 to 82752390 27500 + protein coding gene mitochondrial fission factor
Tssr7625 1 82724909 to 82724943 34 + TSS region transcription start site region 7625
Tssr7626 1 82724964 to 82724968 4 + TSS region transcription start site region 7626
Gm28941 1 82739691 to 82740707 1016 + sense intronic lncRNA gene predicted gene 28941
Gm39668 1 82741983 to 82744788 2805 + lncRNA gene predicted gene, 39668
Tm4sf20 1 82756649 to 82768456 11807 - protein coding gene transmembrane 4 L six family member 20
Tssr12522 1 82767211 to 82767215 4 - TSS region transcription start site region 12522
Tssr12523 1 82768449 to 82768465 16 - TSS region transcription start site region 12523
Gm47791 1 82770824 to 82771243 419 - protein coding gene predicted gene, 47791
Tssr12524 1 82771307 to 82771310 3 - TSS region transcription start site region 12524
Gm19257 1 82777028 to 82777210 182 - pseudogene predicted gene, 19257
D1Mit383 1 82778395 to 82778517 122 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 383
Tssr7627 1 82785937 to 82785939 2 + TSS region transcription start site region 7627
Tssr134 1 82796253 to 82796258 5 - TSS region transcription start site region 134
Tssr12525 1 82798450 to 82798462 12 - TSS region transcription start site region 12525
Gm36999 1 82806423 to 82807468 1045 - unclassified gene predicted gene, 36999
Gm34286 1 82808981 to 82816424 7443 + lncRNA gene predicted gene, 34286
Tssr12526 1 82810606 to 82810611 5 - TSS region transcription start site region 12526
Tssr7628 1 82819655 to 82819665 10 + TSS region transcription start site region 7628
Gm28942 1 82819835 to 82820377 542 + lincRNA gene predicted gene 28942
Tssr7629 1 82820120 to 82820125 5 + TSS region transcription start site region 7629
Tssr7630 1 82821712 to 82821716 4 + TSS region transcription start site region 7630
Gm17764 1 82822471 to 82822861 390 - pseudogene predicted gene, 17764
Gm34450 1 82824279 to 82836055 11776 + lncRNA gene predicted gene, 34450
Tssr7631 1 82824945 to 82824953 8 + TSS region transcription start site region 7631
Tssr12527 1 82827007 to 82827011 4 - TSS region transcription start site region 12527
Tssr12528 1 82832491 to 82832494 3 - TSS region transcription start site region 12528
Tssr12529 1 82832588 to 82832597 9 - TSS region transcription start site region 12529
Gm46096 1 82837681 to 82839350 1669 - lncRNA gene predicted gene, 46096
Cpgi478 1 82839054 to 82840410 1356 CpG island CpG island 478
Gm22396 1 82839446 to 82839498 52 + miRNA gene predicted gene, 22396
Tssr7632 1 82839449 to 82839518 69 + TSS region transcription start site region 7632
Agfg1 1 82839460 to 82901001 61541 + protein coding gene ArfGAP with FG repeats 1
Tssr7633 1 82839560 to 82839571 11 + TSS region transcription start site region 7633
Tssr7634 1 82839651 to 82839684 33 + TSS region transcription start site region 7634
Tssr7635 1 82840155 to 82840171 16 + TSS region transcription start site region 7635
Tssr7636 1 82851201 to 82851209 8 + TSS region transcription start site region 7636
Tssr7637 1 82858359 to 82858409 50 + TSS region transcription start site region 7637
D1Ertd564e 1 82881046 to 82881278 232 DNA segment DNA segment, Chr 1, ERATO Doi 564, expressed
Tssr7638 1 82913322 to 82913329 7 + TSS region transcription start site region 7638
A030005L19Rik 1 82913325 to 82914130 805 + protein coding gene RIKEN cDNA A030005L19 gene
Tssr7639 1 82924915 to 82924917 2 + TSS region transcription start site region 7639
A030014E15Rik 1 82924917 to 82925712 795 + protein coding gene RIKEN cDNA A030014E15 gene
Tssr7640 1 82925381 to 82925390 9 + TSS region transcription start site region 7640
Gm6217 1 82930571 to 82931399 828 - protein coding gene predicted gene 6217
A030003K21Rik 1 82942559 to 82943388 829 - protein coding gene RIKEN cDNA A030003K21 gene
Gm7544 1 82955186 to 82956013 827 - protein coding gene predicted gene 7544
Gm47955 1 82960286 to 82960924 638 + protein coding gene predicted gene, 47955
D1Mit8 1 82966131 to 82966353 222 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 8
Tssr12530 1 82994741 to 82994744 3 - TSS region transcription start site region 12530
Gm47959 1 83000548 to 83001480 932 + protein coding gene predicted gene, 47959
Gm7553 1 83003482 to 83004907 1425 - pseudogene predicted gene 7553
Cpgi479 1 83004530 to 83004726 196 CpG island CpG island 479
Slc19a3 1 83012523 to 83038448 25925 - protein coding gene solute carrier family 19, member 3
Tssr7641 1 83015349 to 83015382 33 + TSS region transcription start site region 7641
Gm7539 1 83015393 to 83016022 629 + pseudogene predicted gene 7539
Cpgi480 1 83038135 to 83038381 246 CpG island CpG island 480
Tssr12531 1 83038411 to 83038422 11 - TSS region transcription start site region 12531
Tssr12532 1 83038432 to 83038459 27 - TSS region transcription start site region 12532
Tssr12533 1 83038821 to 83038825 4 - TSS region transcription start site region 12533
Krtap28-10 1 83041524 to 83042480 956 - protein coding gene keratin associated protein 28-10
Gm47969 1 83044932 to 83045946 1014 + protein coding gene predicted gene, 47969
A030005K14Rik 1 83058286 to 83059378 1092 - unclassified non-coding RNA gene RIKEN cDNA A030005K14 gene
Tssr12534 1 83059369 to 83059377 8 - TSS region transcription start site region 12534
Tssr7642 1 83060927 to 83060933 6 + TSS region transcription start site region 7642
Krtap28-13 1 83060930 to 83061921 991 + protein coding gene keratin associated protein 28-13
Gm29518 1 83067102 to 83067473 371 + pseudogene predicted gene 29518
Tssr7643 1 83116760 to 83116776 16 + TSS region transcription start site region 7643
Ccl20 1 83116766 to 83119167 2401 + protein coding gene chemokine (C-C motif) ligand 20
Gm29519 1 83157984 to 83159017 1033 + pseudogene predicted gene 29519
Cpgi481 1 83159658 to 83159924 266 CpG island CpG island 481
Tssr7644 1 83159733 to 83159773 40 + TSS region transcription start site region 7644
Daw1 1 83159752 to 83210574 50822 + protein coding gene dynein assembly factor with WDR repeat domains 1
Gm6244 1 83212047 to 83212884 837 - pseudogene predicted gene 6244
n-R5s214 1 83216671 to 83216791 120 - rRNA gene nuclear encoded rRNA 5S 214
Sphkap 1 83255442 to 83408393 152951 - protein coding gene SPHK1 interactor, AKAP domain containing
Tssr12535 1 83277106 to 83277145 39 - TSS region transcription start site region 12535
Tssr12536 1 83277148 to 83277164 16 - TSS region transcription start site region 12536
Tssr12537 1 83277201 to 83277212 11 - TSS region transcription start site region 12537
Tssr12538 1 83277228 to 83277242 14 - TSS region transcription start site region 12538
Tssr12539 1 83277332 to 83277344 12 - TSS region transcription start site region 12539
Tssr12540 1 83278796 to 83278828 32 - TSS region transcription start site region 12540
Tssr7645 1 83314451 to 83314471 20 + TSS region transcription start site region 7645
Gm6374 1 83314513 to 83315300 787 + pseudogene predicted gene 6374
Gm37517 1 83331298 to 83332586 1288 - unclassified gene predicted gene, 37517
Cpgi482 1 83407878 to 83408309 431 CpG island CpG island 482
Tssr12541 1 83408030 to 83408040 10 - TSS region transcription start site region 12541
Tssr12542 1 83408058 to 83408152 94 - TSS region transcription start site region 12542
Tssr12543 1 83408159 to 83408181 22 - TSS region transcription start site region 12543
Tssr12544 1 83408190 to 83408222 32 - TSS region transcription start site region 12544
Tssr12545 1 83408267 to 83408290 23 - TSS region transcription start site region 12545
Gm37989 1 83426596 to 83427398 802 - unclassified gene predicted gene, 37989
4933436I20Rik 1 83659550 to 83911644 252094 - lincRNA gene RIKEN cDNA 4933436I20 gene
D1Mit384 1 83666892 to 83667015 123 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 384
D1Mit255 1 83694017 to 83694157 140 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 255
Gm25754 1 83795912 to 83796032 120 + miRNA gene predicted gene, 25754
Tssr7646 1 83836026 to 83836027 1 + TSS region transcription start site region 7646
Gm24555 1 83921918 to 83922041 123 + snoRNA gene predicted gene, 24555
Pid1 1 84036293 to 84339845 303552 - protein coding gene phosphotyrosine interaction domain containing 1
Tssr12546 1 84036687 to 84036699 12 - TSS region transcription start site region 12546
Tssr12547 1 84037273 to 84037286 13 - TSS region transcription start site region 12547
Tssr12548 1 84037439 to 84037463 24 - TSS region transcription start site region 12548
Tssr12549 1 84037464 to 84037485 21 - TSS region transcription start site region 12549
Tssr12550 1 84053433 to 84053438 5 - TSS region transcription start site region 12550
Tssr12551 1 84054563 to 84054584 21 - TSS region transcription start site region 12551
Tssr12552 1 84059103 to 84059116 13 - TSS region transcription start site region 12552
Tssr12553 1 84069080 to 84069104 24 - TSS region transcription start site region 12553
Tssr12554 1 84072055 to 84072082 27 - TSS region transcription start site region 12554
Tssr12555 1 84102306 to 84102308 2 - TSS region transcription start site region 12555
Tssr12556 1 84105594 to 84105629 35 - TSS region transcription start site region 12556
Tssr12557 1 84105653 to 84105669 16 - TSS region transcription start site region 12557
Tssr12558 1 84105679 to 84105692 13 - TSS region transcription start site region 12558
Tssr12559 1 84105707 to 84105738 31 - TSS region transcription start site region 12559
Tssr12560 1 84105754 to 84105765 11 - TSS region transcription start site region 12560
Tssr12561 1 84115009 to 84115017 8 - TSS region transcription start site region 12561
Tssr12562 1 84128402 to 84128424 22 - TSS region transcription start site region 12562
Tssr12563 1 84130916 to 84130921 5 - TSS region transcription start site region 12563
Tssr12564 1 84131201 to 84131217 16 - TSS region transcription start site region 12564
Tssr12565 1 84131289 to 84131305 16 - TSS region transcription start site region 12565
Tssr12566 1 84131329 to 84131340 11 - TSS region transcription start site region 12566
Tssr12567 1 84131758 to 84131770 12 - TSS region transcription start site region 12567
Tssr12568 1 84131821 to 84131831 10 - TSS region transcription start site region 12568
Gm37058 1 84132867 to 84134510 1643 - unclassified gene predicted gene, 37058
Tssr12569 1 84134188 to 84134241 53 - TSS region transcription start site region 12569
Tssr12570 1 84134306 to 84134330 24 - TSS region transcription start site region 12570
Tssr12571 1 84136797 to 84136809 12 - TSS region transcription start site region 12571
Tssr12572 1 84137467 to 84137478 11 - TSS region transcription start site region 12572
Tssr12573 1 84137486 to 84137500 14 - TSS region transcription start site region 12573
Tssr12574 1 84137924 to 84137935 11 - TSS region transcription start site region 12574
Tssr12575 1 84137988 to 84138005 17 - TSS region transcription start site region 12575
Tssr12576 1 84139284 to 84139298 14 - TSS region transcription start site region 12576
Tssr12577 1 84139316 to 84139350 34 - TSS region transcription start site region 12577
Tssr12578 1 84139617 to 84139631 14 - TSS region transcription start site region 12578
Tssr12579 1 84139925 to 84139943 18 - TSS region transcription start site region 12579
Tssr12580 1 84140264 to 84140276 12 - TSS region transcription start site region 12580
Tssr12581 1 84140279 to 84140290 11 - TSS region transcription start site region 12581
Tssr12582 1 84140540 to 84140554 14 - TSS region transcription start site region 12582
Tssr12583 1 84140998 to 84141012 14 - TSS region transcription start site region 12583
Tssr12584 1 84141063 to 84141076 13 - TSS region transcription start site region 12584
Tssr12585 1 84144511 to 84144520 9 - TSS region transcription start site region 12585
Tssr12586 1 84144540 to 84144552 12 - TSS region transcription start site region 12586
Tssr12587 1 84146785 to 84146790 5 - TSS region transcription start site region 12587
Tssr12588 1 84147390 to 84147400 10 - TSS region transcription start site region 12588
Tssr12589 1 84148368 to 84148372 4 - TSS region transcription start site region 12589
Tssr12590 1 84150190 to 84150205 15 - TSS region transcription start site region 12590
Tssr12591 1 84150476 to 84150488 12 - TSS region transcription start site region 12591
Tssr12592 1 84150834 to 84150845 11 - TSS region transcription start site region 12592
Tssr12593 1 84150869 to 84150881 12 - TSS region transcription start site region 12593
Tssr12594 1 84150921 to 84150936 15 - TSS region transcription start site region 12594
Tssr12595 1 84151303 to 84151332 29 - TSS region transcription start site region 12595
Tssr12596 1 84152962 to 84152975 13 - TSS region transcription start site region 12596
Tssr12597 1 84154758 to 84154763 5 - TSS region transcription start site region 12597
Tssr12598 1 84155349 to 84155352 3 - TSS region transcription start site region 12598
Tssr12599 1 84155954 to 84155962 8 - TSS region transcription start site region 12599
Tssr12600 1 84156071 to 84156093 22 - TSS region transcription start site region 12600
Tssr12601 1 84157188 to 84157222 34 - TSS region transcription start site region 12601
Tssr12602 1 84157231 to 84157237 6 - TSS region transcription start site region 12602
Tssr12603 1 84157286 to 84157305 19 - TSS region transcription start site region 12603
Tssr12604 1 84157306 to 84157325 19 - TSS region transcription start site region 12604
Tssr12605 1 84157335 to 84157349 14 - TSS region transcription start site region 12605
Tssr12606 1 84157434 to 84157445 11 - TSS region transcription start site region 12606
Tssr12607 1 84158263 to 84158273 10 - TSS region transcription start site region 12607
Tssr12608 1 84158638 to 84158669 31 - TSS region transcription start site region 12608
Gm18304 1 84168188 to 84168730 542 + pseudogene predicted gene, 18304
Tssr12609 1 84179108 to 84179126 18 - TSS region transcription start site region 12609
Tssr12610 1 84181516 to 84181527 11 - TSS region transcription start site region 12610
Tssr12611 1 84183098 to 84183102 4 - TSS region transcription start site region 12611
Tssr12612 1 84187072 to 84187082 10 - TSS region transcription start site region 12612
Tssr12613 1 84192073 to 84192100 27 - TSS region transcription start site region 12613
Tssr12614 1 84194236 to 84194247 11 - TSS region transcription start site region 12614
Tssr12615 1 84194349 to 84194362 13 - TSS region transcription start site region 12615
Tssr12616 1 84194458 to 84194471 13 - TSS region transcription start site region 12616
Tssr12617 1 84198425 to 84198440 15 - TSS region transcription start site region 12617