Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:82289560-83389571

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141 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dbf 1 59898872 to 82966353 23067481 heritable phenotypic marker doublefoot
Irs1 1 82233101 to 82291416 58315 - protein coding gene insulin receptor substrate 1
Cpgi474 1 82288774 to 82292008 3234 CpG island CpG island 474
Tssr12506 1 82290898 to 82290917 19 - TSS region transcription start site region 12506
Tssr12507 1 82291114 to 82291174 60 - TSS region transcription start site region 12507
Tssr12508 1 82291370 to 82291394 24 - TSS region transcription start site region 12508
Tssr12509 1 82291597 to 82291617 20 - TSS region transcription start site region 12509
D1Mit183 1 82314261 to 82314386 125 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 183
Cpgi475 1 82316171 to 82317040 869 CpG island CpG island 475
Rhbdd1 1 82316457 to 82445366 128909 + protein coding gene rhomboid domain containing 1
Tssr7608 1 82316567 to 82316630 63 + TSS region transcription start site region 7608
Tssr7609 1 82316645 to 82316656 11 + TSS region transcription start site region 7609
Tssr7610 1 82316663 to 82316674 11 + TSS region transcription start site region 7610
Tssr12510 1 82317587 to 82317596 9 - TSS region transcription start site region 12510
Tssr12511 1 82317643 to 82317652 9 - TSS region transcription start site region 12511
Tssr7611 1 82339078 to 82339086 8 + TSS region transcription start site region 7611
Tssr7612 1 82339087 to 82339115 28 + TSS region transcription start site region 7612
Tssr7613 1 82342988 to 82342998 10 + TSS region transcription start site region 7613
Gm19552 1 82352217 to 82355049 2832 + unclassified gene predicted gene, 19552
Gm46095 1 82361701 to 82374558 12857 - lncRNA gene predicted gene, 46095
Gm28940 1 82392493 to 82402746 10253 - antisense lncRNA gene predicted gene 28940
Gm22112 1 82396697 to 82396817 120 - miRNA gene predicted gene, 22112
Col4a4 1 82448423 to 82586849 138426 - protein coding gene collagen, type IV, alpha 4
Tssr132 1 82452612 to 82452616 4 - TSS region transcription start site region 132
Tssr12512 1 82478091 to 82478096 5 - TSS region transcription start site region 12512
Tssr12513 1 82478164 to 82478176 12 - TSS region transcription start site region 12513
Tssr12514 1 82482734 to 82482736 2 - TSS region transcription start site region 12514
Tssr12515 1 82506528 to 82506554 26 - TSS region transcription start site region 12515
Tssr7614 1 82534373 to 82534399 26 + TSS region transcription start site region 7614
D1Mit44 1 82584937 to 82585122 185 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 44
Cpgi476 1 82586570 to 82587405 835 CpG island CpG island 476
Tssr12516 1 82586747 to 82586758 11 - TSS region transcription start site region 12516
Tssr12517 1 82586760 to 82586779 19 - TSS region transcription start site region 12517
Tssr12518 1 82586781 to 82586842 61 - TSS region transcription start site region 12518
Tssr12519 1 82586856 to 82586863 7 - TSS region transcription start site region 12519
Tssr7615 1 82586909 to 82586938 29 + TSS region transcription start site region 7615
Col4a3 1 82586921 to 82722059 135138 + protein coding gene collagen, type IV, alpha 3
Tssr7616 1 82586942 to 82586988 46 + TSS region transcription start site region 7616
Tssr12520 1 82587034 to 82587055 21 - TSS region transcription start site region 12520
Tssr12521 1 82587057 to 82587079 22 - TSS region transcription start site region 12521
Tssr7617 1 82587143 to 82587156 13 + TSS region transcription start site region 7617
Tssr7618 1 82587173 to 82587192 19 + TSS region transcription start site region 7618
Tssr133 1 82587200 to 82587205 5 + TSS region transcription start site region 133
Tssr7619 1 82587227 to 82587236 9 + TSS region transcription start site region 7619
Tssr7620 1 82604046 to 82604057 11 + TSS region transcription start site region 7620
Tssr7621 1 82604073 to 82604093 20 + TSS region transcription start site region 7621
n-R5s213 1 82635013 to 82635110 97 + rRNA gene nuclear encoded rRNA 5S 213
D1Mit382 1 82665468 to 82665568 100 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 382
Tssr7622 1 82676384 to 82676390 6 + TSS region transcription start site region 7622
C430014B12Rik 1 82691928 to 82725169 33241 - lncRNA gene RIKEN cDNA C430014B12 gene
D1Mit254 1 82701306 to 82701405 99 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 254
Tssr7623 1 82718932 to 82718938 6 + TSS region transcription start site region 7623
Cpgi477 1 82724730 to 82725666 936 CpG island CpG island 477
Tssr7624 1 82724881 to 82724895 14 + TSS region transcription start site region 7624
Mff 1 82724890 to 82752390 27500 + protein coding gene mitochondrial fission factor
Tssr7625 1 82724909 to 82724943 34 + TSS region transcription start site region 7625
Tssr7626 1 82724964 to 82724968 4 + TSS region transcription start site region 7626
Gm28941 1 82739691 to 82740707 1016 + sense intronic lncRNA gene predicted gene 28941
Gm39668 1 82741983 to 82744788 2805 + lncRNA gene predicted gene, 39668
Tm4sf20 1 82756649 to 82768456 11807 - protein coding gene transmembrane 4 L six family member 20
Tssr12522 1 82767211 to 82767215 4 - TSS region transcription start site region 12522
Tssr12523 1 82768449 to 82768465 16 - TSS region transcription start site region 12523
Gm47791 1 82770824 to 82771243 419 - protein coding gene predicted gene, 47791
Tssr12524 1 82771307 to 82771310 3 - TSS region transcription start site region 12524
Gm19257 1 82777028 to 82777210 182 - pseudogene predicted gene, 19257
D1Mit383 1 82778395 to 82778517 122 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 383
Tssr7627 1 82785937 to 82785939 2 + TSS region transcription start site region 7627
Tssr134 1 82796253 to 82796258 5 - TSS region transcription start site region 134
Tssr12525 1 82798450 to 82798462 12 - TSS region transcription start site region 12525
Gm36999 1 82806423 to 82807468 1045 - unclassified gene predicted gene, 36999
Gm34286 1 82808981 to 82816424 7443 + lncRNA gene predicted gene, 34286
Tssr12526 1 82810606 to 82810611 5 - TSS region transcription start site region 12526
Tssr7628 1 82819655 to 82819665 10 + TSS region transcription start site region 7628
Gm28942 1 82819835 to 82820377 542 + lincRNA gene predicted gene 28942
Tssr7629 1 82820120 to 82820125 5 + TSS region transcription start site region 7629
Tssr7630 1 82821712 to 82821716 4 + TSS region transcription start site region 7630
Gm17764 1 82822471 to 82822861 390 - pseudogene predicted gene, 17764
Gm34450 1 82824279 to 82836055 11776 + lncRNA gene predicted gene, 34450
Tssr7631 1 82824945 to 82824953 8 + TSS region transcription start site region 7631
Tssr12527 1 82827007 to 82827011 4 - TSS region transcription start site region 12527
Tssr12528 1 82832491 to 82832494 3 - TSS region transcription start site region 12528
Tssr12529 1 82832588 to 82832597 9 - TSS region transcription start site region 12529
Gm46096 1 82837681 to 82839350 1669 - lncRNA gene predicted gene, 46096
Cpgi478 1 82839054 to 82840410 1356 CpG island CpG island 478
Gm22396 1 82839446 to 82839498 52 + miRNA gene predicted gene, 22396
Tssr7632 1 82839449 to 82839518 69 + TSS region transcription start site region 7632
Agfg1 1 82839460 to 82901001 61541 + protein coding gene ArfGAP with FG repeats 1
Tssr7633 1 82839560 to 82839571 11 + TSS region transcription start site region 7633
Tssr7634 1 82839651 to 82839684 33 + TSS region transcription start site region 7634
Tssr7635 1 82840155 to 82840171 16 + TSS region transcription start site region 7635
Tssr7636 1 82851201 to 82851209 8 + TSS region transcription start site region 7636
Tssr7637 1 82858359 to 82858409 50 + TSS region transcription start site region 7637
D1Ertd564e 1 82881046 to 82881278 232 DNA segment DNA segment, Chr 1, ERATO Doi 564, expressed
Tssr7638 1 82913322 to 82913329 7 + TSS region transcription start site region 7638
A030005L19Rik 1 82913325 to 82914130 805 + protein coding gene RIKEN cDNA A030005L19 gene
Tssr7639 1 82924915 to 82924917 2 + TSS region transcription start site region 7639
A030014E15Rik 1 82924917 to 82925712 795 + protein coding gene RIKEN cDNA A030014E15 gene
Tssr7640 1 82925381 to 82925390 9 + TSS region transcription start site region 7640
Gm6217 1 82930571 to 82931399 828 - protein coding gene predicted gene 6217
A030003K21Rik 1 82942559 to 82943388 829 - protein coding gene RIKEN cDNA A030003K21 gene
Gm7544 1 82955186 to 82956013 827 - protein coding gene predicted gene 7544
Gm47955 1 82960286 to 82960924 638 + protein coding gene predicted gene, 47955
D1Mit8 1 82966131 to 82966353 222 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 8
Tssr12530 1 82994741 to 82994744 3 - TSS region transcription start site region 12530
Gm47959 1 83000548 to 83001480 932 + protein coding gene predicted gene, 47959
Gm7553 1 83003482 to 83004907 1425 - pseudogene predicted gene 7553
Cpgi479 1 83004530 to 83004726 196 CpG island CpG island 479
Slc19a3 1 83012523 to 83038448 25925 - protein coding gene solute carrier family 19, member 3
Tssr7641 1 83015349 to 83015382 33 + TSS region transcription start site region 7641
Gm7539 1 83015393 to 83016022 629 + pseudogene predicted gene 7539
Cpgi480 1 83038135 to 83038381 246 CpG island CpG island 480
Tssr12531 1 83038411 to 83038422 11 - TSS region transcription start site region 12531
Tssr12532 1 83038432 to 83038459 27 - TSS region transcription start site region 12532
Tssr12533 1 83038821 to 83038825 4 - TSS region transcription start site region 12533
Krtap28-10 1 83041524 to 83042480 956 - protein coding gene keratin associated protein 28-10
Gm47969 1 83044932 to 83045946 1014 + protein coding gene predicted gene, 47969
A030005K14Rik 1 83058286 to 83059378 1092 - unclassified non-coding RNA gene RIKEN cDNA A030005K14 gene
Tssr12534 1 83059369 to 83059377 8 - TSS region transcription start site region 12534
Tssr7642 1 83060927 to 83060933 6 + TSS region transcription start site region 7642
Krtap28-13 1 83060930 to 83061921 991 + protein coding gene keratin associated protein 28-13
Gm29518 1 83067102 to 83067473 371 + pseudogene predicted gene 29518
Tssr7643 1 83116760 to 83116776 16 + TSS region transcription start site region 7643
Ccl20 1 83116766 to 83119167 2401 + protein coding gene chemokine (C-C motif) ligand 20
Gm29519 1 83157984 to 83159017 1033 + pseudogene predicted gene 29519
Cpgi481 1 83159658 to 83159924 266 CpG island CpG island 481
Tssr7644 1 83159733 to 83159773 40 + TSS region transcription start site region 7644
Daw1 1 83159752 to 83210574 50822 + protein coding gene dynein assembly factor with WDR repeat domains 1
Gm6244 1 83212047 to 83212884 837 - pseudogene predicted gene 6244
n-R5s214 1 83216671 to 83216791 120 - rRNA gene nuclear encoded rRNA 5S 214
Sphkap 1 83255442 to 83408393 152951 - protein coding gene SPHK1 interactor, AKAP domain containing
Tssr12535 1 83277106 to 83277145 39 - TSS region transcription start site region 12535
Tssr12536 1 83277148 to 83277164 16 - TSS region transcription start site region 12536
Tssr12537 1 83277201 to 83277212 11 - TSS region transcription start site region 12537
Tssr12538 1 83277228 to 83277242 14 - TSS region transcription start site region 12538
Tssr12539 1 83277332 to 83277344 12 - TSS region transcription start site region 12539
Tssr12540 1 83278796 to 83278828 32 - TSS region transcription start site region 12540
Tssr7645 1 83314451 to 83314471 20 + TSS region transcription start site region 7645
Gm6374 1 83314513 to 83315300 787 + pseudogene predicted gene 6374
Gm37517 1 83331298 to 83332586 1288 - unclassified gene predicted gene, 37517
Popoa 1 135687641 to 82665468 -53022173 QTL premature ovulation and primary oocyte arrest
Nidd4k 1 147249632 to 82314261 -64935371 QTL Nidd4 on KK-A