Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:81951402-82521416

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41 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm37114 1 82105180 to 82106983 1803 + unclassified gene predicted gene, 37114
Mir6344 1 82131916 to 82132019 103 + miRNA gene microRNA 6344
Irs1 1 82233101 to 82291416 58315 - protein coding gene insulin receptor substrate 1
Gm9747 1 82233112 to 82235933 2821 + protein coding gene predicted gene 9747
Tssr12497 1 82236402 to 82236416 14 - TSS region transcription start site region 12497
Tssr12498 1 82237088 to 82237091 3 - TSS region transcription start site region 12498
Tssr12499 1 82281289 to 82281293 4 - TSS region transcription start site region 12499
Cpgi473 1 82283171 to 82283529 358 CpG island CpG island 473
Tssr12500 1 82283817 to 82283819 2 - TSS region transcription start site region 12500
Tssr12501 1 82286816 to 82286829 13 - TSS region transcription start site region 12501
Tssr12502 1 82286840 to 82286874 34 - TSS region transcription start site region 12502
Tssr12503 1 82287239 to 82287247 8 - TSS region transcription start site region 12503
Tssr12504 1 82287373 to 82287387 14 - TSS region transcription start site region 12504
Tssr12505 1 82287442 to 82287462 20 - TSS region transcription start site region 12505
Cpgi474 1 82288774 to 82292008 3234 CpG island CpG island 474
Tssr12506 1 82290898 to 82290917 19 - TSS region transcription start site region 12506
Tssr12507 1 82291114 to 82291174 60 - TSS region transcription start site region 12507
Tssr12508 1 82291370 to 82291394 24 - TSS region transcription start site region 12508
Tssr12509 1 82291597 to 82291617 20 - TSS region transcription start site region 12509
D1Mit183 1 82314261 to 82314386 125 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 183
Cpgi475 1 82316171 to 82317040 869 CpG island CpG island 475
Rhbdd1 1 82316457 to 82445366 128909 + protein coding gene rhomboid domain containing 1
Tssr7608 1 82316567 to 82316630 63 + TSS region transcription start site region 7608
Tssr7609 1 82316645 to 82316656 11 + TSS region transcription start site region 7609
Tssr7610 1 82316663 to 82316674 11 + TSS region transcription start site region 7610
Tssr12510 1 82317587 to 82317596 9 - TSS region transcription start site region 12510
Tssr12511 1 82317643 to 82317652 9 - TSS region transcription start site region 12511
Tssr7611 1 82339078 to 82339086 8 + TSS region transcription start site region 7611
Tssr7612 1 82339087 to 82339115 28 + TSS region transcription start site region 7612
Tssr7613 1 82342988 to 82342998 10 + TSS region transcription start site region 7613
Gm19552 1 82352217 to 82355049 2832 + unclassified gene predicted gene, 19552
Gm46095 1 82361701 to 82374558 12857 - lncRNA gene predicted gene, 46095
Gm28940 1 82392493 to 82402746 10253 - antisense lncRNA gene predicted gene 28940
Gm22112 1 82396697 to 82396817 120 - miRNA gene predicted gene, 22112
Col4a4 1 82448423 to 82586849 138426 - protein coding gene collagen, type IV, alpha 4
Tssr132 1 82452612 to 82452616 4 - TSS region transcription start site region 132
Tssr12512 1 82478091 to 82478096 5 - TSS region transcription start site region 12512
Tssr12513 1 82478164 to 82478176 12 - TSS region transcription start site region 12513
Tssr12514 1 82482734 to 82482736 2 - TSS region transcription start site region 12514
Tssr12515 1 82506528 to 82506554 26 - TSS region transcription start site region 12515
Nidd4k 1 147249632 to 82314261 -64935371 QTL Nidd4 on KK-A