Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:81801816-82771829

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr12496 1 81835767 to 81835769 2 - TSS region transcription start site region 12496
Gm37114 1 82105180 to 82106983 1803 + unclassified gene predicted gene, 37114
Mir6344 1 82131916 to 82132019 103 + miRNA gene microRNA 6344
Irs1 1 82233101 to 82291416 58315 - protein coding gene insulin receptor substrate 1
Gm9747 1 82233112 to 82235933 2821 + protein coding gene predicted gene 9747
Tssr12497 1 82236402 to 82236416 14 - TSS region transcription start site region 12497
Tssr12498 1 82237088 to 82237091 3 - TSS region transcription start site region 12498
Tssr12499 1 82281289 to 82281293 4 - TSS region transcription start site region 12499
Cpgi473 1 82283171 to 82283529 358 CpG island CpG island 473
Tssr12500 1 82283817 to 82283819 2 - TSS region transcription start site region 12500
Tssr12501 1 82286816 to 82286829 13 - TSS region transcription start site region 12501
Tssr12502 1 82286840 to 82286874 34 - TSS region transcription start site region 12502
Tssr12503 1 82287239 to 82287247 8 - TSS region transcription start site region 12503
Tssr12504 1 82287373 to 82287387 14 - TSS region transcription start site region 12504
Tssr12505 1 82287442 to 82287462 20 - TSS region transcription start site region 12505
Cpgi474 1 82288774 to 82292008 3234 CpG island CpG island 474
Tssr12506 1 82290898 to 82290917 19 - TSS region transcription start site region 12506
Tssr12507 1 82291114 to 82291174 60 - TSS region transcription start site region 12507
Tssr12508 1 82291370 to 82291394 24 - TSS region transcription start site region 12508
Tssr12509 1 82291597 to 82291617 20 - TSS region transcription start site region 12509
D1Mit183 1 82314261 to 82314386 125 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 183
Cpgi475 1 82316171 to 82317040 869 CpG island CpG island 475
Rhbdd1 1 82316457 to 82445366 128909 + protein coding gene rhomboid domain containing 1
Tssr7608 1 82316567 to 82316630 63 + TSS region transcription start site region 7608
Tssr7609 1 82316645 to 82316656 11 + TSS region transcription start site region 7609
Tssr7610 1 82316663 to 82316674 11 + TSS region transcription start site region 7610
Tssr12510 1 82317587 to 82317596 9 - TSS region transcription start site region 12510
Tssr12511 1 82317643 to 82317652 9 - TSS region transcription start site region 12511
Tssr7611 1 82339078 to 82339086 8 + TSS region transcription start site region 7611
Tssr7612 1 82339087 to 82339115 28 + TSS region transcription start site region 7612
Tssr7613 1 82342988 to 82342998 10 + TSS region transcription start site region 7613
Gm19552 1 82352217 to 82355049 2832 + unclassified gene predicted gene, 19552
Gm46095 1 82361701 to 82374558 12857 - lncRNA gene predicted gene, 46095
Gm28940 1 82392493 to 82402746 10253 - antisense lncRNA gene predicted gene 28940
Gm22112 1 82396697 to 82396817 120 - miRNA gene predicted gene, 22112
Col4a4 1 82448423 to 82586849 138426 - protein coding gene collagen, type IV, alpha 4
Tssr132 1 82452612 to 82452616 4 - TSS region transcription start site region 132
Tssr12512 1 82478091 to 82478096 5 - TSS region transcription start site region 12512
Tssr12513 1 82478164 to 82478176 12 - TSS region transcription start site region 12513
Tssr12514 1 82482734 to 82482736 2 - TSS region transcription start site region 12514
Tssr12515 1 82506528 to 82506554 26 - TSS region transcription start site region 12515
Tssr7614 1 82534373 to 82534399 26 + TSS region transcription start site region 7614
D1Mit44 1 82584937 to 82585122 185 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 44
Cpgi476 1 82586570 to 82587405 835 CpG island CpG island 476
Tssr12516 1 82586747 to 82586758 11 - TSS region transcription start site region 12516
Tssr12517 1 82586760 to 82586779 19 - TSS region transcription start site region 12517
Tssr12518 1 82586781 to 82586842 61 - TSS region transcription start site region 12518
Tssr12519 1 82586856 to 82586863 7 - TSS region transcription start site region 12519
Tssr7615 1 82586909 to 82586938 29 + TSS region transcription start site region 7615
Col4a3 1 82586921 to 82722059 135138 + protein coding gene collagen, type IV, alpha 3
Tssr7616 1 82586942 to 82586988 46 + TSS region transcription start site region 7616
Tssr12520 1 82587034 to 82587055 21 - TSS region transcription start site region 12520
Tssr12521 1 82587057 to 82587079 22 - TSS region transcription start site region 12521
Tssr7617 1 82587143 to 82587156 13 + TSS region transcription start site region 7617
Tssr7618 1 82587173 to 82587192 19 + TSS region transcription start site region 7618
Tssr133 1 82587200 to 82587205 5 + TSS region transcription start site region 133
Tssr7619 1 82587227 to 82587236 9 + TSS region transcription start site region 7619
Tssr7620 1 82604046 to 82604057 11 + TSS region transcription start site region 7620
Tssr7621 1 82604073 to 82604093 20 + TSS region transcription start site region 7621
n-R5s213 1 82635013 to 82635110 97 + rRNA gene nuclear encoded rRNA 5S 213
D1Mit382 1 82665468 to 82665568 100 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 382
Tssr7622 1 82676384 to 82676390 6 + TSS region transcription start site region 7622
C430014B12Rik 1 82691928 to 82725169 33241 - lncRNA gene RIKEN cDNA C430014B12 gene
D1Mit254 1 82701306 to 82701405 99 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 254
Tssr7623 1 82718932 to 82718938 6 + TSS region transcription start site region 7623
Cpgi477 1 82724730 to 82725666 936 CpG island CpG island 477
Tssr7624 1 82724881 to 82724895 14 + TSS region transcription start site region 7624
Mff 1 82724890 to 82752390 27500 + protein coding gene mitochondrial fission factor
Tssr7625 1 82724909 to 82724943 34 + TSS region transcription start site region 7625
Tssr7626 1 82724964 to 82724968 4 + TSS region transcription start site region 7626
Gm28941 1 82739691 to 82740707 1016 + sense intronic lncRNA gene predicted gene 28941
Gm39668 1 82741983 to 82744788 2805 + lncRNA gene predicted gene, 39668
Tm4sf20 1 82756649 to 82768456 11807 - protein coding gene transmembrane 4 L six family member 20
Tssr12522 1 82767211 to 82767215 4 - TSS region transcription start site region 12522
Tssr12523 1 82768449 to 82768465 16 - TSS region transcription start site region 12523
Gm47791 1 82770824 to 82771243 419 - protein coding gene predicted gene, 47791
Tssr12524 1 82771307 to 82771310 3 - TSS region transcription start site region 12524
Popoa 1 135687641 to 82665468 -53022173 QTL premature ovulation and primary oocyte arrest
Nidd4k 1 147249632 to 82314261 -64935371 QTL Nidd4 on KK-A