Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:80164261-84464386

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407 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dbf 1 59898872 to 82966353 23067481 heritable phenotypic marker doublefoot
Mota1 1 79958656 to 80270207 311551 QTL motor activity 1
Tssr12452 1 80177756 to 80177770 14 - TSS region transcription start site region 12452
9830004L10Rik 1 80184719 to 80192073 7354 + lincRNA gene RIKEN cDNA 9830004L10 gene
Fam124b 1 80198699 to 80214205 15506 - protein coding gene family with sequence similarity 124, member B
Cpgi469 1 80200139 to 80200295 156 CpG island CpG island 469
Tssr12453 1 80213839 to 80213854 15 - TSS region transcription start site region 12453
Tssr12454 1 80213931 to 80213949 18 - TSS region transcription start site region 12454
Tssr12455 1 80218451 to 80218457 6 - TSS region transcription start site region 12455
Tssr7592 1 80225040 to 80225052 12 + TSS region transcription start site region 7592
2310015K22Rik 1 80225044 to 80228792 3748 + lincRNA gene RIKEN cDNA 2310015K22 gene
Gm34098 1 80236352 to 80248414 12062 + lncRNA gene predicted gene, 34098
Gm37932 1 80255031 to 80256197 1166 - unclassified gene predicted gene, 37932
Cul3 1 80264923 to 80340480 75557 - protein coding gene cullin 3
D1Mit134 1 80267876 to 80268019 143 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 134
Gm37902 1 80274731 to 80276413 1682 - unclassified gene predicted gene, 37902
Tssr12456 1 80276511 to 80276550 39 - TSS region transcription start site region 12456
Tssr12457 1 80277439 to 80277451 12 - TSS region transcription start site region 12457
Tssr12458 1 80287661 to 80287665 4 - TSS region transcription start site region 12458
Tssr12459 1 80289738 to 80289757 19 - TSS region transcription start site region 12459
Tssr12460 1 80289880 to 80289884 4 - TSS region transcription start site region 12460
Gm37262 1 80326177 to 80327994 1817 - unclassified gene predicted gene, 37262
Tssr12461 1 80329148 to 80329149 1 - TSS region transcription start site region 12461
Cpgi470 1 80339637 to 80341249 1612 CpG island CpG island 470
Tssr12462 1 80340343 to 80340354 11 - TSS region transcription start site region 12462
Tssr12463 1 80340384 to 80340395 11 - TSS region transcription start site region 12463
Tssr12464 1 80340501 to 80340512 11 - TSS region transcription start site region 12464
Tssr12465 1 80340532 to 80340543 11 - TSS region transcription start site region 12465
Tssr12466 1 80340602 to 80340613 11 - TSS region transcription start site region 12466
Tssr12467 1 80340617 to 80340648 31 - TSS region transcription start site region 12467
Tssr12468 1 80340653 to 80340675 22 - TSS region transcription start site region 12468
Tssr12469 1 80340680 to 80340820 140 - TSS region transcription start site region 12469
Gm39667 1 80340913 to 80348728 7815 + lncRNA gene predicted gene, 39667
Gm29125 1 80382822 to 80386251 3429 + lincRNA gene predicted gene 29125
Gm6189 1 80383107 to 80385185 2078 - pseudogene predicted gene 6189
Cpgi471 1 80384268 to 80384530 262 CpG island CpG island 471
Tssr12470 1 80385375 to 80385382 7 - TSS region transcription start site region 12470
Tssr12471 1 80405496 to 80405498 2 - TSS region transcription start site region 12471
Tssr130 1 80412770 to 80412791 21 + TSS region transcription start site region 130
Gm38673 1 80428170 to 80498102 69932 + lncRNA gene predicted gene, 38673
Tssr7593 1 80428241 to 80428252 11 + TSS region transcription start site region 7593
Tssr7594 1 80445888 to 80445895 7 + TSS region transcription start site region 7594
Tssr7595 1 80445914 to 80445922 8 + TSS region transcription start site region 7595
Tssr7596 1 80445923 to 80445936 13 + TSS region transcription start site region 7596
1700016L21Rik 1 80445932 to 80475660 29728 + antisense lncRNA gene RIKEN cDNA 1700016L21 gene
Gm45261 1 80449597 to 80461448 11851 - protein coding gene predicted gene 45261
Dock10 1 80501073 to 80758527 257454 - protein coding gene dedicator of cytokinesis 10
Tssr12472 1 80544243 to 80544263 20 - TSS region transcription start site region 12472
Tssr12473 1 80549849 to 80549853 4 - TSS region transcription start site region 12473
Tssr12474 1 80574185 to 80574200 15 - TSS region transcription start site region 12474
D1Dcr55 1 80575933 to 80576028 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 55
Tssr12475 1 80599035 to 80599039 4 - TSS region transcription start site region 12475
Tssr12476 1 80605819 to 80605835 16 - TSS region transcription start site region 12476
F830005D05Rik 1 80618461 to 80620824 2363 unclassified gene RIKEN cDNA F830005D05 gene
Tssr12477 1 80631395 to 80631422 27 - TSS region transcription start site region 12477
Tssr12478 1 80631448 to 80631467 19 - TSS region transcription start site region 12478
Tssr131 1 80660357 to 80660360 3 + TSS region transcription start site region 131
Tssr12479 1 80664293 to 80664303 10 - TSS region transcription start site region 12479
Tssr12480 1 80665207 to 80665219 12 - TSS region transcription start site region 12480
Tssr12481 1 80665252 to 80665305 53 - TSS region transcription start site region 12481
Tssr12482 1 80665308 to 80665355 47 - TSS region transcription start site region 12482
Gm37645 1 80666009 to 80669564 3555 - unclassified gene predicted gene, 37645
Tssr12483 1 80709375 to 80709401 26 - TSS region transcription start site region 12483
Tssr12484 1 80709499 to 80709516 17 - TSS region transcription start site region 12484
Tssr12485 1 80710394 to 80710402 8 - TSS region transcription start site region 12485
Tssr12486 1 80715481 to 80715491 10 - TSS region transcription start site region 12486
Tssr12487 1 80715705 to 80715709 4 - TSS region transcription start site region 12487
Tssr12488 1 80726353 to 80726357 4 - TSS region transcription start site region 12488
Gm38062 1 80728809 to 80730664 1855 - unclassified gene predicted gene, 38062
A630081D01Rik 1 80747222 to 80749054 1832 - unclassified gene RIKEN cDNA A630081D01 gene
Tssr12489 1 80755808 to 80755821 13 - TSS region transcription start site region 12489
Tssr12490 1 80756050 to 80756052 2 - TSS region transcription start site region 12490
Tssr7597 1 80757690 to 80757707 17 + TSS region transcription start site region 7597
Tssr7598 1 80757738 to 80757751 13 + TSS region transcription start site region 7598
Cpgi472 1 80757904 to 80758884 980 CpG island CpG island 472
Tssr7599 1 80758146 to 80758157 11 + TSS region transcription start site region 7599
Tssr12491 1 80758481 to 80758499 18 - TSS region transcription start site region 12491
Tssr12492 1 80758516 to 80758532 16 - TSS region transcription start site region 12492
Tssr12493 1 80758536 to 80758558 22 - TSS region transcription start site region 12493
Tssr12494 1 80758662 to 80758680 18 - TSS region transcription start site region 12494
Tssr12495 1 80758691 to 80758709 18 - TSS region transcription start site region 12495
Gm29124 1 80897654 to 80898105 451 - pseudogene predicted gene 29124
Gm28066 1 80949426 to 80949897 471 + pseudogene predicted gene 28066
Nyap2 1 81076950 to 81341764 264814 + protein coding gene neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2
Tssr7600 1 81077217 to 81077252 35 + TSS region transcription start site region 7600
Tssr7601 1 81077256 to 81077265 9 + TSS region transcription start site region 7601
Tssr7602 1 81077274 to 81077327 53 + TSS region transcription start site region 7602
Tssr7603 1 81077484 to 81077499 15 + TSS region transcription start site region 7603
Tssr7604 1 81093982 to 81093989 7 + TSS region transcription start site region 7604
Tssr7605 1 81166877 to 81166901 24 + TSS region transcription start site region 7605
Tssr7606 1 81187502 to 81187505 3 + TSS region transcription start site region 7606
D1Dcr42 1 81249061 to 81249157 96 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 42
D1Dcr56 1 81279851 to 81279946 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 56
Tssr7607 1 81323406 to 81323407 1 + TSS region transcription start site region 7607
Gm37210 1 81520338 to 81522341 2003 - unclassified gene predicted gene, 37210
Gm6198 1 81554157 to 81557483 3326 - pseudogene predicted gene 6198
Sst1 1 81674399 to 87203100 5528701 QTL susceptibility to tuberculosis 1
D1Mit439 1 81674399 to 81674522 123 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 439
Gm5530 1 81741985 to 81742969 984 - pseudogene predicted gene 5530
Gm7516 1 81797241 to 81797946 705 + pseudogene predicted gene 7516
Tssr12496 1 81835767 to 81835769 2 - TSS region transcription start site region 12496
Gm37114 1 82105180 to 82106983 1803 + unclassified gene predicted gene, 37114
Mir6344 1 82131916 to 82132019 103 + miRNA gene microRNA 6344
Irs1 1 82233101 to 82291416 58315 - protein coding gene insulin receptor substrate 1
Gm9747 1 82233112 to 82235933 2821 + protein coding gene predicted gene 9747
Tssr12497 1 82236402 to 82236416 14 - TSS region transcription start site region 12497
Tssr12498 1 82237088 to 82237091 3 - TSS region transcription start site region 12498
Tssr12499 1 82281289 to 82281293 4 - TSS region transcription start site region 12499
Cpgi473 1 82283171 to 82283529 358 CpG island CpG island 473
Tssr12500 1 82283817 to 82283819 2 - TSS region transcription start site region 12500
Tssr12501 1 82286816 to 82286829 13 - TSS region transcription start site region 12501
Tssr12502 1 82286840 to 82286874 34 - TSS region transcription start site region 12502
Tssr12503 1 82287239 to 82287247 8 - TSS region transcription start site region 12503
Tssr12504 1 82287373 to 82287387 14 - TSS region transcription start site region 12504
Tssr12505 1 82287442 to 82287462 20 - TSS region transcription start site region 12505
Cpgi474 1 82288774 to 82292008 3234 CpG island CpG island 474
Tssr12506 1 82290898 to 82290917 19 - TSS region transcription start site region 12506
Tssr12507 1 82291114 to 82291174 60 - TSS region transcription start site region 12507
Tssr12508 1 82291370 to 82291394 24 - TSS region transcription start site region 12508
Tssr12509 1 82291597 to 82291617 20 - TSS region transcription start site region 12509
D1Mit183 1 82314261 to 82314386 125 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 183
Cpgi475 1 82316171 to 82317040 869 CpG island CpG island 475
Rhbdd1 1 82316457 to 82445366 128909 + protein coding gene rhomboid domain containing 1
Tssr7608 1 82316567 to 82316630 63 + TSS region transcription start site region 7608
Tssr7609 1 82316645 to 82316656 11 + TSS region transcription start site region 7609
Tssr7610 1 82316663 to 82316674 11 + TSS region transcription start site region 7610
Tssr12510 1 82317587 to 82317596 9 - TSS region transcription start site region 12510
Tssr12511 1 82317643 to 82317652 9 - TSS region transcription start site region 12511
Tssr7611 1 82339078 to 82339086 8 + TSS region transcription start site region 7611
Tssr7612 1 82339087 to 82339115 28 + TSS region transcription start site region 7612
Tssr7613 1 82342988 to 82342998 10 + TSS region transcription start site region 7613
Gm19552 1 82352217 to 82355049 2832 + unclassified gene predicted gene, 19552
Gm46095 1 82361701 to 82374558 12857 - lncRNA gene predicted gene, 46095
Gm28940 1 82392493 to 82402746 10253 - antisense lncRNA gene predicted gene 28940
Gm22112 1 82396697 to 82396817 120 - miRNA gene predicted gene, 22112
Col4a4 1 82448423 to 82586849 138426 - protein coding gene collagen, type IV, alpha 4
Tssr132 1 82452612 to 82452616 4 - TSS region transcription start site region 132
Tssr12512 1 82478091 to 82478096 5 - TSS region transcription start site region 12512
Tssr12513 1 82478164 to 82478176 12 - TSS region transcription start site region 12513
Tssr12514 1 82482734 to 82482736 2 - TSS region transcription start site region 12514
Tssr12515 1 82506528 to 82506554 26 - TSS region transcription start site region 12515
Tssr7614 1 82534373 to 82534399 26 + TSS region transcription start site region 7614
D1Mit44 1 82584937 to 82585122 185 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 44
Cpgi476 1 82586570 to 82587405 835 CpG island CpG island 476
Tssr12516 1 82586747 to 82586758 11 - TSS region transcription start site region 12516
Tssr12517 1 82586760 to 82586779 19 - TSS region transcription start site region 12517
Tssr12518 1 82586781 to 82586842 61 - TSS region transcription start site region 12518
Tssr12519 1 82586856 to 82586863 7 - TSS region transcription start site region 12519
Tssr7615 1 82586909 to 82586938 29 + TSS region transcription start site region 7615
Col4a3 1 82586921 to 82722059 135138 + protein coding gene collagen, type IV, alpha 3
Tssr7616 1 82586942 to 82586988 46 + TSS region transcription start site region 7616
Tssr12520 1 82587034 to 82587055 21 - TSS region transcription start site region 12520
Tssr12521 1 82587057 to 82587079 22 - TSS region transcription start site region 12521
Tssr7617 1 82587143 to 82587156 13 + TSS region transcription start site region 7617
Tssr7618 1 82587173 to 82587192 19 + TSS region transcription start site region 7618
Tssr133 1 82587200 to 82587205 5 + TSS region transcription start site region 133
Tssr7619 1 82587227 to 82587236 9 + TSS region transcription start site region 7619
Tssr7620 1 82604046 to 82604057 11 + TSS region transcription start site region 7620
Tssr7621 1 82604073 to 82604093 20 + TSS region transcription start site region 7621
n-R5s213 1 82635013 to 82635110 97 + rRNA gene nuclear encoded rRNA 5S 213
D1Mit382 1 82665468 to 82665568 100 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 382
Tssr7622 1 82676384 to 82676390 6 + TSS region transcription start site region 7622
C430014B12Rik 1 82691928 to 82725169 33241 - lncRNA gene RIKEN cDNA C430014B12 gene
D1Mit254 1 82701306 to 82701405 99 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 254
Tssr7623 1 82718932 to 82718938 6 + TSS region transcription start site region 7623
Cpgi477 1 82724730 to 82725666 936 CpG island CpG island 477
Tssr7624 1 82724881 to 82724895 14 + TSS region transcription start site region 7624
Mff 1 82724890 to 82752390 27500 + protein coding gene mitochondrial fission factor
Tssr7625 1 82724909 to 82724943 34 + TSS region transcription start site region 7625
Tssr7626 1 82724964 to 82724968 4 + TSS region transcription start site region 7626
Gm28941 1 82739691 to 82740707 1016 + sense intronic lncRNA gene predicted gene 28941
Gm39668 1 82741983 to 82744788 2805 + lncRNA gene predicted gene, 39668
Tm4sf20 1 82756649 to 82768456 11807 - protein coding gene transmembrane 4 L six family member 20
Tssr12522 1 82767211 to 82767215 4 - TSS region transcription start site region 12522
Tssr12523 1 82768449 to 82768465 16 - TSS region transcription start site region 12523
Gm47791 1 82770824 to 82771243 419 - protein coding gene predicted gene, 47791
Tssr12524 1 82771307 to 82771310 3 - TSS region transcription start site region 12524
Gm19257 1 82777028 to 82777210 182 - pseudogene predicted gene, 19257
D1Mit383 1 82778395 to 82778517 122 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 383
Tssr7627 1 82785937 to 82785939 2 + TSS region transcription start site region 7627
Tssr134 1 82796253 to 82796258 5 - TSS region transcription start site region 134
Tssr12525 1 82798450 to 82798462 12 - TSS region transcription start site region 12525
Gm36999 1 82806423 to 82807468 1045 - unclassified gene predicted gene, 36999
Gm34286 1 82808981 to 82816424 7443 + lncRNA gene predicted gene, 34286
Tssr12526 1 82810606 to 82810611 5 - TSS region transcription start site region 12526
Tssr7628 1 82819655 to 82819665 10 + TSS region transcription start site region 7628
Gm28942 1 82819835 to 82820377 542 + lincRNA gene predicted gene 28942
Tssr7629 1 82820120 to 82820125 5 + TSS region transcription start site region 7629
Tssr7630 1 82821712 to 82821716 4 + TSS region transcription start site region 7630
Gm17764 1 82822471 to 82822861 390 - pseudogene predicted gene, 17764
Gm34450 1 82824279 to 82836055 11776 + lncRNA gene predicted gene, 34450
Tssr7631 1 82824945 to 82824953 8 + TSS region transcription start site region 7631
Tssr12527 1 82827007 to 82827011 4 - TSS region transcription start site region 12527
Tssr12528 1 82832491 to 82832494 3 - TSS region transcription start site region 12528
Tssr12529 1 82832588 to 82832597 9 - TSS region transcription start site region 12529
Gm46096 1 82837681 to 82839350 1669 - lncRNA gene predicted gene, 46096
Cpgi478 1 82839054 to 82840410 1356 CpG island CpG island 478
Gm22396 1 82839446 to 82839498 52 + miRNA gene predicted gene, 22396
Tssr7632 1 82839449 to 82839518 69 + TSS region transcription start site region 7632
Agfg1 1 82839460 to 82901001 61541 + protein coding gene ArfGAP with FG repeats 1