Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:80040252-81290305

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mota1 1 79958656 to 80270207 311551 QTL motor activity 1
Gm28058 1 80098622 to 80098885 263 + pseudogene predicted gene 28058
Gm23934 1 80135466 to 80135572 106 + snRNA gene predicted gene, 23934
Gm38339 1 80146973 to 80148801 1828 - unclassified gene predicted gene, 38339
Tssr12452 1 80177756 to 80177770 14 - TSS region transcription start site region 12452
9830004L10Rik 1 80184719 to 80192073 7354 + lincRNA gene RIKEN cDNA 9830004L10 gene
Fam124b 1 80198699 to 80214205 15506 - protein coding gene family with sequence similarity 124, member B
Cpgi469 1 80200139 to 80200295 156 CpG island CpG island 469
Tssr12453 1 80213839 to 80213854 15 - TSS region transcription start site region 12453
Tssr12454 1 80213931 to 80213949 18 - TSS region transcription start site region 12454
Tssr12455 1 80218451 to 80218457 6 - TSS region transcription start site region 12455
Tssr7592 1 80225040 to 80225052 12 + TSS region transcription start site region 7592
2310015K22Rik 1 80225044 to 80228792 3748 + lincRNA gene RIKEN cDNA 2310015K22 gene
Gm34098 1 80236352 to 80248414 12062 + lncRNA gene predicted gene, 34098
Gm37932 1 80255031 to 80256197 1166 - unclassified gene predicted gene, 37932
Cul3 1 80264923 to 80340480 75557 - protein coding gene cullin 3
D1Mit134 1 80267876 to 80268019 143 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 134
Gm37902 1 80274731 to 80276413 1682 - unclassified gene predicted gene, 37902
Tssr12456 1 80276511 to 80276550 39 - TSS region transcription start site region 12456
Tssr12457 1 80277439 to 80277451 12 - TSS region transcription start site region 12457
Tssr12458 1 80287661 to 80287665 4 - TSS region transcription start site region 12458
Tssr12459 1 80289738 to 80289757 19 - TSS region transcription start site region 12459
Tssr12460 1 80289880 to 80289884 4 - TSS region transcription start site region 12460
Gm37262 1 80326177 to 80327994 1817 - unclassified gene predicted gene, 37262
Tssr12461 1 80329148 to 80329149 1 - TSS region transcription start site region 12461
Cpgi470 1 80339637 to 80341249 1612 CpG island CpG island 470
Tssr12462 1 80340343 to 80340354 11 - TSS region transcription start site region 12462
Tssr12463 1 80340384 to 80340395 11 - TSS region transcription start site region 12463
Tssr12464 1 80340501 to 80340512 11 - TSS region transcription start site region 12464
Tssr12465 1 80340532 to 80340543 11 - TSS region transcription start site region 12465
Tssr12466 1 80340602 to 80340613 11 - TSS region transcription start site region 12466
Tssr12467 1 80340617 to 80340648 31 - TSS region transcription start site region 12467
Tssr12468 1 80340653 to 80340675 22 - TSS region transcription start site region 12468
Tssr12469 1 80340680 to 80340820 140 - TSS region transcription start site region 12469
Gm39667 1 80340913 to 80348728 7815 + lncRNA gene predicted gene, 39667
Gm29125 1 80382822 to 80386251 3429 + lincRNA gene predicted gene 29125
Gm6189 1 80383107 to 80385185 2078 - pseudogene predicted gene 6189
Cpgi471 1 80384268 to 80384530 262 CpG island CpG island 471
Tssr12470 1 80385375 to 80385382 7 - TSS region transcription start site region 12470
Tssr12471 1 80405496 to 80405498 2 - TSS region transcription start site region 12471
Tssr130 1 80412770 to 80412791 21 + TSS region transcription start site region 130
Gm38673 1 80428170 to 80498102 69932 + lncRNA gene predicted gene, 38673
Tssr7593 1 80428241 to 80428252 11 + TSS region transcription start site region 7593
Tssr7594 1 80445888 to 80445895 7 + TSS region transcription start site region 7594
Tssr7595 1 80445914 to 80445922 8 + TSS region transcription start site region 7595
Tssr7596 1 80445923 to 80445936 13 + TSS region transcription start site region 7596
1700016L21Rik 1 80445932 to 80475660 29728 + antisense lncRNA gene RIKEN cDNA 1700016L21 gene
Gm45261 1 80449597 to 80461448 11851 - protein coding gene predicted gene 45261
Dock10 1 80501073 to 80758527 257454 - protein coding gene dedicator of cytokinesis 10
Tssr12472 1 80544243 to 80544263 20 - TSS region transcription start site region 12472
Tssr12473 1 80549849 to 80549853 4 - TSS region transcription start site region 12473
Tssr12474 1 80574185 to 80574200 15 - TSS region transcription start site region 12474
D1Dcr55 1 80575933 to 80576028 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 55
Tssr12475 1 80599035 to 80599039 4 - TSS region transcription start site region 12475
Tssr12476 1 80605819 to 80605835 16 - TSS region transcription start site region 12476
F830005D05Rik 1 80618461 to 80620824 2363 unclassified gene RIKEN cDNA F830005D05 gene
Tssr12477 1 80631395 to 80631422 27 - TSS region transcription start site region 12477
Tssr12478 1 80631448 to 80631467 19 - TSS region transcription start site region 12478
Tssr131 1 80660357 to 80660360 3 + TSS region transcription start site region 131
Tssr12479 1 80664293 to 80664303 10 - TSS region transcription start site region 12479
Tssr12480 1 80665207 to 80665219 12 - TSS region transcription start site region 12480
Tssr12481 1 80665252 to 80665305 53 - TSS region transcription start site region 12481
Tssr12482 1 80665308 to 80665355 47 - TSS region transcription start site region 12482
Gm37645 1 80666009 to 80669564 3555 - unclassified gene predicted gene, 37645
Tssr12483 1 80709375 to 80709401 26 - TSS region transcription start site region 12483
Tssr12484 1 80709499 to 80709516 17 - TSS region transcription start site region 12484
Tssr12485 1 80710394 to 80710402 8 - TSS region transcription start site region 12485
Tssr12486 1 80715481 to 80715491 10 - TSS region transcription start site region 12486
Tssr12487 1 80715705 to 80715709 4 - TSS region transcription start site region 12487
Tssr12488 1 80726353 to 80726357 4 - TSS region transcription start site region 12488
Gm38062 1 80728809 to 80730664 1855 - unclassified gene predicted gene, 38062
A630081D01Rik 1 80747222 to 80749054 1832 - unclassified gene RIKEN cDNA A630081D01 gene
Tssr12489 1 80755808 to 80755821 13 - TSS region transcription start site region 12489
Tssr12490 1 80756050 to 80756052 2 - TSS region transcription start site region 12490
Tssr7597 1 80757690 to 80757707 17 + TSS region transcription start site region 7597
Tssr7598 1 80757738 to 80757751 13 + TSS region transcription start site region 7598
Cpgi472 1 80757904 to 80758884 980 CpG island CpG island 472
Tssr7599 1 80758146 to 80758157 11 + TSS region transcription start site region 7599
Tssr12491 1 80758481 to 80758499 18 - TSS region transcription start site region 12491
Tssr12492 1 80758516 to 80758532 16 - TSS region transcription start site region 12492
Tssr12493 1 80758536 to 80758558 22 - TSS region transcription start site region 12493
Tssr12494 1 80758662 to 80758680 18 - TSS region transcription start site region 12494
Tssr12495 1 80758691 to 80758709 18 - TSS region transcription start site region 12495
Gm29124 1 80897654 to 80898105 451 - pseudogene predicted gene 29124
Gm28066 1 80949426 to 80949897 471 + pseudogene predicted gene 28066
Nyap2 1 81076950 to 81341764 264814 + protein coding gene neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2
Tssr7600 1 81077217 to 81077252 35 + TSS region transcription start site region 7600
Tssr7601 1 81077256 to 81077265 9 + TSS region transcription start site region 7601
Tssr7602 1 81077274 to 81077327 53 + TSS region transcription start site region 7602
Tssr7603 1 81077484 to 81077499 15 + TSS region transcription start site region 7603
Tssr7604 1 81093982 to 81093989 7 + TSS region transcription start site region 7604
Tssr7605 1 81166877 to 81166901 24 + TSS region transcription start site region 7605
Tssr7606 1 81187502 to 81187505 3 + TSS region transcription start site region 7606
D1Dcr42 1 81249061 to 81249157 96 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 42
D1Dcr56 1 81279851 to 81279946 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 56
Leusq2 1 126458780 to 80267876 -46190904 QTL leucocytosis susceptibility QTL 2