Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:79006817-80326820

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm29536 1 78791623 to 79224511 432888 - lincRNA gene predicted gene 29536
Tssr7587 1 79197747 to 79197757 10 + TSS region transcription start site region 7587
Tssr129 1 79335029 to 79335034 5 + TSS region transcription start site region 129
Tssr12432 1 79371729 to 79371732 3 - TSS region transcription start site region 12432
Scg2 1 79434669 to 79440090 5421 - protein coding gene secretogranin II
Tssr12433 1 79436252 to 79436265 13 - TSS region transcription start site region 12433
Tssr12434 1 79436329 to 79436348 19 - TSS region transcription start site region 12434
Cpgi462 1 79439983 to 79440138 155 CpG island CpG island 462
Tssr12435 1 79440003 to 79440014 11 - TSS region transcription start site region 12435
Tssr12436 1 79440015 to 79440035 20 - TSS region transcription start site region 12436
Tssr12437 1 79440039 to 79440080 41 - TSS region transcription start site region 12437
Tssr12438 1 79440103 to 79440108 5 - TSS region transcription start site region 12438
Cpgi463 1 79450405 to 79450565 160 CpG island CpG island 463
Gm19027 1 79505803 to 79507157 1354 - pseudogene predicted gene, 19027
Gm24160 1 79513739 to 79513864 125 - snoRNA gene predicted gene, 24160
Ap1s3 1 79606876 to 79671972 65096 - protein coding gene adaptor-related protein complex AP-1, sigma 3
Gm37886 1 79619522 to 79621034 1512 - unclassified gene predicted gene, 37886
Tssr12439 1 79666817 to 79666820 3 - TSS region transcription start site region 12439
Tssr12440 1 79670166 to 79670167 1 - TSS region transcription start site region 12440
Cpgi464 1 79671518 to 79672402 884 CpG island CpG island 464
Tssr12441 1 79671966 to 79671993 27 - TSS region transcription start site region 12441
Tssr12442 1 79672084 to 79672088 4 - TSS region transcription start site region 12442
Wdfy1 1 79702262 to 79776047 73785 - protein coding gene WD repeat and FYVE domain containing 1
Cpgi465 1 79760852 to 79761111 259 CpG island CpG island 465
Cpgi466 1 79761190 to 79761994 804 CpG island CpG island 466
Tssr12443 1 79761698 to 79761748 50 - TSS region transcription start site region 12443
Tssr12444 1 79761752 to 79761774 22 - TSS region transcription start site region 12444
Tssr12445 1 79761783 to 79761794 11 - TSS region transcription start site region 12445
Tssr12446 1 79762430 to 79762443 13 - TSS region transcription start site region 12446
Gm10555 1 79762717 to 79764507 1790 + unclassified gene predicted gene 10555
Tssr12447 1 79762930 to 79762965 35 - TSS region transcription start site region 12447
Cpgi467 1 79775910 to 79776451 541 CpG island CpG island 467
Mrpl44 1 79776018 to 79781445 5427 + protein coding gene mitochondrial ribosomal protein L44
Tssr7588 1 79776096 to 79776132 36 + TSS region transcription start site region 7588
Tssr7589 1 79776250 to 79776262 12 + TSS region transcription start site region 7589
Gm39666 1 79787924 to 79794121 6197 + lncRNA gene predicted gene, 39666
Serpine2 1 79794317 to 79858665 64348 - protein coding gene serine (or cysteine) peptidase inhibitor, clade E, member 2
D1Mit216 1 79806194 to 79806313 119 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 216
5730433N10Rik 1 79838919 to 79840373 1454 unclassified gene RIKEN cDNA 5730433N10 gene
Tssr7590 1 79855953 to 79855988 35 + TSS region transcription start site region 7590
Tssr7591 1 79857503 to 79857506 3 + TSS region transcription start site region 7591
Cpgi468 1 79858066 to 79859290 1224 CpG island CpG island 468
Tssr12448 1 79858627 to 79858643 16 - TSS region transcription start site region 12448
Tssr12449 1 79861294 to 79861303 9 - TSS region transcription start site region 12449
Gm5529 1 79922536 to 79923426 890 - pseudogene predicted pseudogene 5529
Tssr12450 1 79923502 to 79923508 6 - TSS region transcription start site region 12450
Gm28071 1 79957580 to 79958057 477 + pseudogene predicted gene 28071
Mota1 1 79958656 to 80270207 311551 QTL motor activity 1
Tssr12451 1 80033653 to 80033662 9 - TSS region transcription start site region 12451
Gm33970 1 80037178 to 80038461 1283 - lncRNA gene predicted gene, 33970
Gm28058 1 80098622 to 80098885 263 + pseudogene predicted gene 28058
Gm23934 1 80135466 to 80135572 106 + snRNA gene predicted gene, 23934
Gm38339 1 80146973 to 80148801 1828 - unclassified gene predicted gene, 38339
Tssr12452 1 80177756 to 80177770 14 - TSS region transcription start site region 12452
9830004L10Rik 1 80184719 to 80192073 7354 + lincRNA gene RIKEN cDNA 9830004L10 gene
Fam124b 1 80198699 to 80214205 15506 - protein coding gene family with sequence similarity 124, member B
Cpgi469 1 80200139 to 80200295 156 CpG island CpG island 469
Tssr12453 1 80213839 to 80213854 15 - TSS region transcription start site region 12453
Tssr12454 1 80213931 to 80213949 18 - TSS region transcription start site region 12454
Tssr12455 1 80218451 to 80218457 6 - TSS region transcription start site region 12455
Tssr7592 1 80225040 to 80225052 12 + TSS region transcription start site region 7592
2310015K22Rik 1 80225044 to 80228792 3748 + lincRNA gene RIKEN cDNA 2310015K22 gene
Gm34098 1 80236352 to 80248414 12062 + lncRNA gene predicted gene, 34098
Gm37932 1 80255031 to 80256197 1166 - unclassified gene predicted gene, 37932
Cul3 1 80264923 to 80340480 75557 - protein coding gene cullin 3
D1Mit134 1 80267876 to 80268019 143 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 134
Gm37902 1 80274731 to 80276413 1682 - unclassified gene predicted gene, 37902
Tssr12456 1 80276511 to 80276550 39 - TSS region transcription start site region 12456
Tssr12457 1 80277439 to 80277451 12 - TSS region transcription start site region 12457
Tssr12458 1 80287661 to 80287665 4 - TSS region transcription start site region 12458
Tssr12459 1 80289738 to 80289757 19 - TSS region transcription start site region 12459
Tssr12460 1 80289880 to 80289884 4 - TSS region transcription start site region 12460
Gm37262 1 80326177 to 80327994 1817 - unclassified gene predicted gene, 37262
Leusq2 1 126458780 to 80267876 -46190904 QTL leucocytosis susceptibility QTL 2