Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:78364984-79101154

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47 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sgpp2 1 78310345 to 78420289 109944 + protein coding gene sphingosine-1-phosphate phosphotase 2
Gm37884 1 78375614 to 78376431 817 + unclassified gene predicted gene, 37884
Gm19072 1 78414073 to 78414699 626 - pseudogene predicted gene, 19072
Farsb 1 78417975 to 78488897 70922 - protein coding gene phenylalanyl-tRNA synthetase, beta subunit
Tssr12425 1 78422694 to 78422711 17 - TSS region transcription start site region 12425
Gm28995 1 78433352 to 78433612 260 + pseudogene predicted gene 28995
4833412K13Rik 1 78465448 to 78466926 1478 - unclassified gene RIKEN cDNA 4833412K13 gene
Cpgi458 1 78488342 to 78489004 662 CpG island CpG island 458
Tssr12426 1 78488849 to 78488866 17 - TSS region transcription start site region 12426
BC035947 1 78497026 to 78512158 15132 - protein coding gene cDNA sequence BC035947
Mogat1 1 78510991 to 78538173 27182 + protein coding gene monoacylglycerol O-acyltransferase 1
Cpgi459 1 78511712 to 78512159 447 CpG island CpG island 459
Tssr7571 1 78511743 to 78511762 19 + TSS region transcription start site region 7571
Tssr7572 1 78511805 to 78511816 11 + TSS region transcription start site region 7572
Tssr7573 1 78511836 to 78511847 11 + TSS region transcription start site region 7573
Tssr7574 1 78511865 to 78511896 31 + TSS region transcription start site region 7574
Tssr7575 1 78511904 to 78511921 17 + TSS region transcription start site region 7575
Tssr7576 1 78526569 to 78526602 33 + TSS region transcription start site region 7576
Tssr12427 1 78537498 to 78537507 9 - TSS region transcription start site region 12427
Cpgi460 1 78537571 to 78537914 343 CpG island CpG island 460
Tssr7577 1 78537938 to 78537941 3 + TSS region transcription start site region 7577
Tssr7578 1 78537962 to 78537972 10 + TSS region transcription start site region 7578
Tssr7579 1 78537979 to 78537992 13 + TSS region transcription start site region 7579
Gm39665 1 78560045 to 78588394 28349 - lncRNA gene predicted gene, 39665
5730419F03Rik 1 78595031 to 78609508 14477 - lincRNA gene RIKEN cDNA 5730419F03 gene
Tssr7580 1 78602342 to 78602364 22 + TSS region transcription start site region 7580
Gm29611 1 78615467 to 78620165 4698 + lincRNA gene predicted gene 29611
Cpgi461 1 78657494 to 78658629 1135 CpG island CpG island 461
Acsl3 1 78657825 to 78707743 49918 + protein coding gene acyl-CoA synthetase long-chain family member 3
Utp14b 1 78657825 to 78667601 9776 + protein coding gene UTP14B small subunit processome component
Tssr7581 1 78657856 to 78657868 12 + TSS region transcription start site region 7581
Tssr7582 1 78657874 to 78657889 15 + TSS region transcription start site region 7582
Tssr12428 1 78658273 to 78658282 9 - TSS region transcription start site region 12428
Tssr12429 1 78658290 to 78658309 19 - TSS region transcription start site region 12429
Tssr7583 1 78669511 to 78669530 19 + TSS region transcription start site region 7583
Tssr7584 1 78674203 to 78674208 5 + TSS region transcription start site region 7584
Tssr12430 1 78680686 to 78680720 34 - TSS region transcription start site region 12430
Gm38631 1 78719984 to 78746154 26170 + lncRNA gene predicted gene, 38631
Gm33693 1 78726659 to 78740969 14310 - lncRNA gene predicted gene, 33693
Tssr7585 1 78738126 to 78738158 32 + TSS region transcription start site region 7585
Gm6159 1 78783136 to 78784859 1723 - pseudogene predicted gene 6159
Gm29536 1 78791623 to 79224511 432888 - lincRNA gene predicted gene 29536
Tssr7586 1 78816909 to 78816913 4 + TSS region transcription start site region 7586
Kcne4 1 78816949 to 78820025 3076 + protein coding gene potassium voltage-gated channel, Isk-related subfamily, gene 4
Gm29187 1 78821258 to 78822652 1394 + lincRNA gene predicted gene 29187
Gm5830 1 78967637 to 78968079 442 - pseudogene predicted pseudogene 5830
Tssr12431 1 78968084 to 78968100 16 - TSS region transcription start site region 12431