Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:78330808-83180821

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342 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dbf 1 59898872 to 82966353 23067481 heritable phenotypic marker doublefoot
Sgpp2 1 78310345 to 78420289 109944 + protein coding gene sphingosine-1-phosphate phosphotase 2
Gm28410 1 78325628 to 78340106 14478 - antisense lncRNA gene predicted gene 28410
Gm37884 1 78375614 to 78376431 817 + unclassified gene predicted gene, 37884
Gm19072 1 78414073 to 78414699 626 - pseudogene predicted gene, 19072
Farsb 1 78417975 to 78488897 70922 - protein coding gene phenylalanyl-tRNA synthetase, beta subunit
Tssr12425 1 78422694 to 78422711 17 - TSS region transcription start site region 12425
Gm28995 1 78433352 to 78433612 260 + pseudogene predicted gene 28995
4833412K13Rik 1 78465448 to 78466926 1478 - unclassified gene RIKEN cDNA 4833412K13 gene
Cpgi458 1 78488342 to 78489004 662 CpG island CpG island 458
Tssr12426 1 78488849 to 78488866 17 - TSS region transcription start site region 12426
BC035947 1 78497026 to 78512158 15132 - protein coding gene cDNA sequence BC035947
Mogat1 1 78510991 to 78538173 27182 + protein coding gene monoacylglycerol O-acyltransferase 1
Cpgi459 1 78511712 to 78512159 447 CpG island CpG island 459
Tssr7571 1 78511743 to 78511762 19 + TSS region transcription start site region 7571
Tssr7572 1 78511805 to 78511816 11 + TSS region transcription start site region 7572
Tssr7573 1 78511836 to 78511847 11 + TSS region transcription start site region 7573
Tssr7574 1 78511865 to 78511896 31 + TSS region transcription start site region 7574
Tssr7575 1 78511904 to 78511921 17 + TSS region transcription start site region 7575
Tssr7576 1 78526569 to 78526602 33 + TSS region transcription start site region 7576
Tssr12427 1 78537498 to 78537507 9 - TSS region transcription start site region 12427
Cpgi460 1 78537571 to 78537914 343 CpG island CpG island 460
Tssr7577 1 78537938 to 78537941 3 + TSS region transcription start site region 7577
Tssr7578 1 78537962 to 78537972 10 + TSS region transcription start site region 7578
Tssr7579 1 78537979 to 78537992 13 + TSS region transcription start site region 7579
Gm39665 1 78560045 to 78588394 28349 - lncRNA gene predicted gene, 39665
5730419F03Rik 1 78595031 to 78609508 14477 - lincRNA gene RIKEN cDNA 5730419F03 gene
Tssr7580 1 78602342 to 78602364 22 + TSS region transcription start site region 7580
Gm29611 1 78615467 to 78620165 4698 + lincRNA gene predicted gene 29611
Cpgi461 1 78657494 to 78658629 1135 CpG island CpG island 461
Acsl3 1 78657825 to 78707743 49918 + protein coding gene acyl-CoA synthetase long-chain family member 3
Utp14b 1 78657825 to 78667601 9776 + protein coding gene UTP14B small subunit processome component
Tssr7581 1 78657856 to 78657868 12 + TSS region transcription start site region 7581
Tssr7582 1 78657874 to 78657889 15 + TSS region transcription start site region 7582
Tssr12428 1 78658273 to 78658282 9 - TSS region transcription start site region 12428
Tssr12429 1 78658290 to 78658309 19 - TSS region transcription start site region 12429
Tssr7583 1 78669511 to 78669530 19 + TSS region transcription start site region 7583
Tssr7584 1 78674203 to 78674208 5 + TSS region transcription start site region 7584
Tssr12430 1 78680686 to 78680720 34 - TSS region transcription start site region 12430
Gm38631 1 78719984 to 78746154 26170 + lncRNA gene predicted gene, 38631
Gm33693 1 78726659 to 78740969 14310 - lncRNA gene predicted gene, 33693
Tssr7585 1 78738126 to 78738158 32 + TSS region transcription start site region 7585
Gm6159 1 78783136 to 78784859 1723 - pseudogene predicted gene 6159
Gm29536 1 78791623 to 79224511 432888 - lincRNA gene predicted gene 29536
Tssr7586 1 78816909 to 78816913 4 + TSS region transcription start site region 7586
Kcne4 1 78816949 to 78820025 3076 + protein coding gene potassium voltage-gated channel, Isk-related subfamily, gene 4
Gm29187 1 78821258 to 78822652 1394 + lincRNA gene predicted gene 29187
Gm5830 1 78967637 to 78968079 442 - pseudogene predicted pseudogene 5830
Tssr12431 1 78968084 to 78968100 16 - TSS region transcription start site region 12431
Tssr7587 1 79197747 to 79197757 10 + TSS region transcription start site region 7587
Tssr129 1 79335029 to 79335034 5 + TSS region transcription start site region 129
Tssr12432 1 79371729 to 79371732 3 - TSS region transcription start site region 12432
Scg2 1 79434669 to 79440090 5421 - protein coding gene secretogranin II
Tssr12433 1 79436252 to 79436265 13 - TSS region transcription start site region 12433
Tssr12434 1 79436329 to 79436348 19 - TSS region transcription start site region 12434
Cpgi462 1 79439983 to 79440138 155 CpG island CpG island 462
Tssr12435 1 79440003 to 79440014 11 - TSS region transcription start site region 12435
Tssr12436 1 79440015 to 79440035 20 - TSS region transcription start site region 12436
Tssr12437 1 79440039 to 79440080 41 - TSS region transcription start site region 12437
Tssr12438 1 79440103 to 79440108 5 - TSS region transcription start site region 12438
Cpgi463 1 79450405 to 79450565 160 CpG island CpG island 463
Gm19027 1 79505803 to 79507157 1354 - pseudogene predicted gene, 19027
Gm24160 1 79513739 to 79513864 125 - snoRNA gene predicted gene, 24160
Ap1s3 1 79606876 to 79671972 65096 - protein coding gene adaptor-related protein complex AP-1, sigma 3
Gm37886 1 79619522 to 79621034 1512 - unclassified gene predicted gene, 37886
Tssr12439 1 79666817 to 79666820 3 - TSS region transcription start site region 12439
Tssr12440 1 79670166 to 79670167 1 - TSS region transcription start site region 12440
Cpgi464 1 79671518 to 79672402 884 CpG island CpG island 464
Tssr12441 1 79671966 to 79671993 27 - TSS region transcription start site region 12441
Tssr12442 1 79672084 to 79672088 4 - TSS region transcription start site region 12442
Wdfy1 1 79702262 to 79776047 73785 - protein coding gene WD repeat and FYVE domain containing 1
Cpgi465 1 79760852 to 79761111 259 CpG island CpG island 465
Cpgi466 1 79761190 to 79761994 804 CpG island CpG island 466
Tssr12443 1 79761698 to 79761748 50 - TSS region transcription start site region 12443
Tssr12444 1 79761752 to 79761774 22 - TSS region transcription start site region 12444
Tssr12445 1 79761783 to 79761794 11 - TSS region transcription start site region 12445
Tssr12446 1 79762430 to 79762443 13 - TSS region transcription start site region 12446
Gm10555 1 79762717 to 79764507 1790 + unclassified gene predicted gene 10555
Tssr12447 1 79762930 to 79762965 35 - TSS region transcription start site region 12447
Cpgi467 1 79775910 to 79776451 541 CpG island CpG island 467
Mrpl44 1 79776018 to 79781445 5427 + protein coding gene mitochondrial ribosomal protein L44
Tssr7588 1 79776096 to 79776132 36 + TSS region transcription start site region 7588
Tssr7589 1 79776250 to 79776262 12 + TSS region transcription start site region 7589
Gm39666 1 79787924 to 79794121 6197 + lncRNA gene predicted gene, 39666
Serpine2 1 79794317 to 79858665 64348 - protein coding gene serine (or cysteine) peptidase inhibitor, clade E, member 2
D1Mit216 1 79806194 to 79806313 119 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 216
5730433N10Rik 1 79838919 to 79840373 1454 unclassified gene RIKEN cDNA 5730433N10 gene
Tssr7590 1 79855953 to 79855988 35 + TSS region transcription start site region 7590
Tssr7591 1 79857503 to 79857506 3 + TSS region transcription start site region 7591
Cpgi468 1 79858066 to 79859290 1224 CpG island CpG island 468
Tssr12448 1 79858627 to 79858643 16 - TSS region transcription start site region 12448
Tssr12449 1 79861294 to 79861303 9 - TSS region transcription start site region 12449
Gm5529 1 79922536 to 79923426 890 - pseudogene predicted pseudogene 5529
Tssr12450 1 79923502 to 79923508 6 - TSS region transcription start site region 12450
Gm28071 1 79957580 to 79958057 477 + pseudogene predicted gene 28071
Mota1 1 79958656 to 80270207 311551 QTL motor activity 1
Tssr12451 1 80033653 to 80033662 9 - TSS region transcription start site region 12451
Gm33970 1 80037178 to 80038461 1283 - lncRNA gene predicted gene, 33970
Gm28058 1 80098622 to 80098885 263 + pseudogene predicted gene 28058
Gm23934 1 80135466 to 80135572 106 + snRNA gene predicted gene, 23934
Gm38339 1 80146973 to 80148801 1828 - unclassified gene predicted gene, 38339
Tssr12452 1 80177756 to 80177770 14 - TSS region transcription start site region 12452
9830004L10Rik 1 80184719 to 80192073 7354 + lincRNA gene RIKEN cDNA 9830004L10 gene
Fam124b 1 80198699 to 80214205 15506 - protein coding gene family with sequence similarity 124, member B
Cpgi469 1 80200139 to 80200295 156 CpG island CpG island 469
Tssr12453 1 80213839 to 80213854 15 - TSS region transcription start site region 12453
Tssr12454 1 80213931 to 80213949 18 - TSS region transcription start site region 12454
Tssr12455 1 80218451 to 80218457 6 - TSS region transcription start site region 12455
Tssr7592 1 80225040 to 80225052 12 + TSS region transcription start site region 7592
2310015K22Rik 1 80225044 to 80228792 3748 + lincRNA gene RIKEN cDNA 2310015K22 gene
Gm34098 1 80236352 to 80248414 12062 + lncRNA gene predicted gene, 34098
Gm37932 1 80255031 to 80256197 1166 - unclassified gene predicted gene, 37932
Cul3 1 80264923 to 80340480 75557 - protein coding gene cullin 3
D1Mit134 1 80267876 to 80268019 143 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 134
Gm37902 1 80274731 to 80276413 1682 - unclassified gene predicted gene, 37902
Tssr12456 1 80276511 to 80276550 39 - TSS region transcription start site region 12456
Tssr12457 1 80277439 to 80277451 12 - TSS region transcription start site region 12457
Tssr12458 1 80287661 to 80287665 4 - TSS region transcription start site region 12458
Tssr12459 1 80289738 to 80289757 19 - TSS region transcription start site region 12459
Tssr12460 1 80289880 to 80289884 4 - TSS region transcription start site region 12460
Gm37262 1 80326177 to 80327994 1817 - unclassified gene predicted gene, 37262
Tssr12461 1 80329148 to 80329149 1 - TSS region transcription start site region 12461
Cpgi470 1 80339637 to 80341249 1612 CpG island CpG island 470
Tssr12462 1 80340343 to 80340354 11 - TSS region transcription start site region 12462
Tssr12463 1 80340384 to 80340395 11 - TSS region transcription start site region 12463
Tssr12464 1 80340501 to 80340512 11 - TSS region transcription start site region 12464
Tssr12465 1 80340532 to 80340543 11 - TSS region transcription start site region 12465
Tssr12466 1 80340602 to 80340613 11 - TSS region transcription start site region 12466
Tssr12467 1 80340617 to 80340648 31 - TSS region transcription start site region 12467
Tssr12468 1 80340653 to 80340675 22 - TSS region transcription start site region 12468
Tssr12469 1 80340680 to 80340820 140 - TSS region transcription start site region 12469
Gm39667 1 80340913 to 80348728 7815 + lncRNA gene predicted gene, 39667
Gm29125 1 80382822 to 80386251 3429 + lincRNA gene predicted gene 29125
Gm6189 1 80383107 to 80385185 2078 - pseudogene predicted gene 6189
Cpgi471 1 80384268 to 80384530 262 CpG island CpG island 471
Tssr12470 1 80385375 to 80385382 7 - TSS region transcription start site region 12470
Tssr12471 1 80405496 to 80405498 2 - TSS region transcription start site region 12471
Tssr130 1 80412770 to 80412791 21 + TSS region transcription start site region 130
Gm38673 1 80428170 to 80498102 69932 + lncRNA gene predicted gene, 38673
Tssr7593 1 80428241 to 80428252 11 + TSS region transcription start site region 7593
Tssr7594 1 80445888 to 80445895 7 + TSS region transcription start site region 7594
Tssr7595 1 80445914 to 80445922 8 + TSS region transcription start site region 7595
Tssr7596 1 80445923 to 80445936 13 + TSS region transcription start site region 7596
1700016L21Rik 1 80445932 to 80475660 29728 + antisense lncRNA gene RIKEN cDNA 1700016L21 gene
Gm45261 1 80449597 to 80461448 11851 - protein coding gene predicted gene 45261
Dock10 1 80501073 to 80758527 257454 - protein coding gene dedicator of cytokinesis 10
Tssr12472 1 80544243 to 80544263 20 - TSS region transcription start site region 12472
Tssr12473 1 80549849 to 80549853 4 - TSS region transcription start site region 12473
Tssr12474 1 80574185 to 80574200 15 - TSS region transcription start site region 12474
D1Dcr55 1 80575933 to 80576028 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 55
Tssr12475 1 80599035 to 80599039 4 - TSS region transcription start site region 12475
Tssr12476 1 80605819 to 80605835 16 - TSS region transcription start site region 12476
F830005D05Rik 1 80618461 to 80620824 2363 unclassified gene RIKEN cDNA F830005D05 gene
Tssr12477 1 80631395 to 80631422 27 - TSS region transcription start site region 12477
Tssr12478 1 80631448 to 80631467 19 - TSS region transcription start site region 12478
Tssr131 1 80660357 to 80660360 3 + TSS region transcription start site region 131
Tssr12479 1 80664293 to 80664303 10 - TSS region transcription start site region 12479
Tssr12480 1 80665207 to 80665219 12 - TSS region transcription start site region 12480
Tssr12481 1 80665252 to 80665305 53 - TSS region transcription start site region 12481
Tssr12482 1 80665308 to 80665355 47 - TSS region transcription start site region 12482
Gm37645 1 80666009 to 80669564 3555 - unclassified gene predicted gene, 37645
Tssr12483 1 80709375 to 80709401 26 - TSS region transcription start site region 12483
Tssr12484 1 80709499 to 80709516 17 - TSS region transcription start site region 12484
Tssr12485 1 80710394 to 80710402 8 - TSS region transcription start site region 12485
Tssr12486 1 80715481 to 80715491 10 - TSS region transcription start site region 12486
Tssr12487 1 80715705 to 80715709 4 - TSS region transcription start site region 12487
Tssr12488 1 80726353 to 80726357 4 - TSS region transcription start site region 12488
Gm38062 1 80728809 to 80730664 1855 - unclassified gene predicted gene, 38062
A630081D01Rik 1 80747222 to 80749054 1832 - unclassified gene RIKEN cDNA A630081D01 gene
Tssr12489 1 80755808 to 80755821 13 - TSS region transcription start site region 12489
Tssr12490 1 80756050 to 80756052 2 - TSS region transcription start site region 12490
Tssr7597 1 80757690 to 80757707 17 + TSS region transcription start site region 7597
Tssr7598 1 80757738 to 80757751 13 + TSS region transcription start site region 7598
Cpgi472 1 80757904 to 80758884 980 CpG island CpG island 472
Tssr7599 1 80758146 to 80758157 11 + TSS region transcription start site region 7599
Tssr12491 1 80758481 to 80758499 18 - TSS region transcription start site region 12491
Tssr12492 1 80758516 to 80758532 16 - TSS region transcription start site region 12492
Tssr12493 1 80758536 to 80758558 22 - TSS region transcription start site region 12493
Tssr12494 1 80758662 to 80758680 18 - TSS region transcription start site region 12494
Tssr12495 1 80758691 to 80758709 18 - TSS region transcription start site region 12495
Gm29124 1 80897654 to 80898105 451 - pseudogene predicted gene 29124
Gm28066 1 80949426 to 80949897 471 + pseudogene predicted gene 28066
Nyap2 1 81076950 to 81341764 264814 + protein coding gene neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2
Tssr7600 1 81077217 to 81077252 35 + TSS region transcription start site region 7600
Tssr7601 1 81077256 to 81077265 9 + TSS region transcription start site region 7601
Tssr7602 1 81077274 to 81077327 53 + TSS region transcription start site region 7602
Tssr7603 1 81077484 to 81077499 15 + TSS region transcription start site region 7603
Tssr7604 1 81093982 to 81093989 7 + TSS region transcription start site region 7604
Tssr7605 1 81166877 to 81166901 24 + TSS region transcription start site region 7605
Tssr7606 1 81187502 to 81187505 3 + TSS region transcription start site region 7606
D1Dcr42 1 81249061 to 81249157 96 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 42
D1Dcr56 1 81279851 to 81279946 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 56
Tssr7607 1 81323406 to 81323407 1 + TSS region transcription start site region 7607
Gm37210 1 81520338 to 81522341 2003 - unclassified gene predicted gene, 37210
Gm6198 1 81554157 to 81557483 3326 - pseudogene predicted gene 6198
Sst1 1 81674399 to 87203100 5528701 QTL susceptibility to tuberculosis 1
D1Mit439 1 81674399 to 81674522 123 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 439
Gm5530 1 81741985 to 81742969 984 - pseudogene predicted gene 5530
Gm7516 1 81797241 to 81797946 705 + pseudogene predicted gene 7516
Tssr12496 1 81835767 to 81835769 2 - TSS region transcription start site region 12496