Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:76527368-78517386

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
dde 1 70367239 to 76794683 6427444 heritable phenotypic marker disproportionate dwarf and eye defect
Mol2 1 71585520 to 78206507 6620987 QTL modifier of LPS-response 2
Gm29069 1 76420692 to 76528422 107730 + lincRNA gene predicted gene 29069
Tssr128 1 76596651 to 76596652 1 + TSS region transcription start site region 128
D1Mit133 1 76623936 to 76624172 236 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 133
D1Mit79 1 76627756 to 76627905 149 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 79
D1Mit162 1 76794554 to 76794683 129 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 162
D1Mit436 1 76823488 to 76823607 119 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 436
Gm816 1 76890472 to 77027792 137320 - lincRNA gene predicted gene 816
Tssr7561 1 77050293 to 77050294 1 + TSS region transcription start site region 7561
Gm2060 1 77050301 to 77050884 583 + pseudogene predicted gene 2060
Tssr7562 1 77065866 to 77065878 12 + TSS region transcription start site region 7562
Tfdp1-ps 1 77065870 to 77067692 1822 + pseudogene transcription factor Dp 1, pseudogene
Gm38265 1 77143227 to 77146992 3765 - unclassified gene predicted gene, 38265
Gm25974 1 77144753 to 77144846 93 + rRNA gene predicted gene, 25974
D1Mit132 1 77146478 to 77146623 145 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 132
Epha4 1 77367185 to 77515088 147903 - protein coding gene Eph receptor A4
D1Mit332 1 77403501 to 77403621 120 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 332
Tssr12416 1 77457264 to 77457272 8 - TSS region transcription start site region 12416
Tssr12417 1 77488697 to 77488701 4 - TSS region transcription start site region 12417
Mir6352 1 77496653 to 77496768 115 - miRNA gene microRNA 6352
Cpgi447 1 77513411 to 77513914 503 CpG island CpG island 447
Cpgi448 1 77514071 to 77515864 1793 CpG island CpG island 448
Tssr12418 1 77515048 to 77515102 54 - TSS region transcription start site region 12418
Gm28386 1 77515280 to 77517128 1848 + lincRNA gene predicted gene 28386
Cpgi449 1 77516080 to 77516903 823 CpG island CpG island 449
Gm32793 1 77522190 to 77602382 80192 + lncRNA gene predicted gene, 32793
Tssr7563 1 77522368 to 77522386 18 + TSS region transcription start site region 7563
Gm28385 1 77570672 to 77570963 291 + pseudogene predicted gene 28385
Gm32974 1 77604423 to 77642338 37915 + lncRNA gene predicted gene, 32974
Gm33083 1 77770548 to 77896298 125750 - lncRNA gene predicted gene, 33083
Gm33030 1 77813643 to 77915486 101843 + lncRNA gene predicted gene, 33030
Tssr7564 1 77848021 to 77848028 7 + TSS region transcription start site region 7564
Gm26263 1 77898283 to 77898446 163 - snRNA gene predicted gene, 26263
Tssr12419 1 77898437 to 77898447 10 - TSS region transcription start site region 12419
D1Mit253 1 77914689 to 77914834 145 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 253
Gm28387 1 77942966 to 77972376 29410 - lincRNA gene predicted gene 28387
Tssr7565 1 77951432 to 77951439 7 + TSS region transcription start site region 7565
Cpgi450 1 78081769 to 78082060 291 CpG island CpG island 450
Pax3 1 78101267 to 78197134 95867 - protein coding gene paired box 3
Tssr12420 1 78174734 to 78174740 6 - TSS region transcription start site region 12420
Cpgi451 1 78189547 to 78190114 567 CpG island CpG island 451
Cpgi452 1 78195211 to 78195443 232 CpG island CpG island 452
Cpgi453 1 78196277 to 78197346 1069 CpG island CpG island 453
Tssr12421 1 78196792 to 78196820 28 - TSS region transcription start site region 12421
Tssr12422 1 78196832 to 78196845 13 - TSS region transcription start site region 12422
Tssr12423 1 78197112 to 78197117 5 - TSS region transcription start site region 12423
Gm33152 1 78199984 to 78203051 3067 + lncRNA gene predicted gene, 33152
Tssr7566 1 78201212 to 78201246 34 + TSS region transcription start site region 7566
Cpgi454 1 78201468 to 78201927 459 CpG island CpG island 454
Cpgi455 1 78203650 to 78204206 556 CpG island CpG island 455
D1Mit215 1 78206359 to 78206507 148 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 215
Gm2102 1 78214964 to 78218978 4014 - protein coding gene predicted gene 2102
Cpgi456 1 78215877 to 78218237 2360 CpG island CpG island 456
n-TPagg1 1 78297795 to 78297866 71 + tRNA gene nuclear encoded tRNA proline 1 (anticodon AGG)
Tssr7567 1 78309555 to 78309568 13 + TSS region transcription start site region 7567
Cpgi457 1 78309968 to 78311013 1045 CpG island CpG island 457
Tssr7568 1 78310295 to 78310375 80 + TSS region transcription start site region 7568
Sgpp2 1 78310345 to 78420289 109944 + protein coding gene sphingosine-1-phosphate phosphotase 2
Tssr7569 1 78310377 to 78310386 9 + TSS region transcription start site region 7569
Tssr7570 1 78310391 to 78310400 9 + TSS region transcription start site region 7570
Tssr12424 1 78311976 to 78311979 3 - TSS region transcription start site region 12424
Gm28410 1 78325628 to 78340106 14478 - antisense lncRNA gene predicted gene 28410
Gm37884 1 78375614 to 78376431 817 + unclassified gene predicted gene, 37884
Gm19072 1 78414073 to 78414699 626 - pseudogene predicted gene, 19072
Farsb 1 78417975 to 78488897 70922 - protein coding gene phenylalanyl-tRNA synthetase, beta subunit
Tssr12425 1 78422694 to 78422711 17 - TSS region transcription start site region 12425
Gm28995 1 78433352 to 78433612 260 + pseudogene predicted gene 28995
4833412K13Rik 1 78465448 to 78466926 1478 - unclassified gene RIKEN cDNA 4833412K13 gene
Cpgi458 1 78488342 to 78489004 662 CpG island CpG island 458
Tssr12426 1 78488849 to 78488866 17 - TSS region transcription start site region 12426
BC035947 1 78497026 to 78512158 15132 - protein coding gene cDNA sequence BC035947
Mogat1 1 78510991 to 78538173 27182 + protein coding gene monoacylglycerol O-acyltransferase 1
Cpgi459 1 78511712 to 78512159 447 CpG island CpG island 459
Tssr7571 1 78511743 to 78511762 19 + TSS region transcription start site region 7571
Tssr7572 1 78511805 to 78511816 11 + TSS region transcription start site region 7572
Tssr7573 1 78511836 to 78511847 11 + TSS region transcription start site region 7573
Tssr7574 1 78511865 to 78511896 31 + TSS region transcription start site region 7574
Tssr7575 1 78511904 to 78511921 17 + TSS region transcription start site region 7575
Mord2 1 110608345 to 77146478 -33461867 QTL modifier of retinal degeneration 2