Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:75998342-80979004

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254 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
dde 1 70367239 to 76794683 6427444 heritable phenotypic marker disproportionate dwarf and eye defect
Mol2 1 71585520 to 78206507 6620987 QTL modifier of LPS-response 2
Gm32622 1 75936719 to 76094342 157623 + lncRNA gene predicted gene, 32622
Gm29065 1 76016658 to 76018756 2098 - lincRNA gene predicted gene 29065
Gm32737 1 76094981 to 76106216 11235 + lncRNA gene predicted gene, 32737
Gm29068 1 76110181 to 76110580 399 - pseudogene predicted gene 29068
D1Mit333 1 76366572 to 76366673 101 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 333
D1Mit484 1 76386343 to 76386457 114 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 484
Gm29069 1 76420692 to 76528422 107730 + lincRNA gene predicted gene 29069
D1Mit483.1 1 76454674 to 76454789 115 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 483.1
D1Mit483 1 76454848 to 76454963 115 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 483
Gm17751 1 76489133 to 76502028 12895 + lincRNA gene predicted gene, 17751
Mir6343 1 76509560 to 76509643 83 + miRNA gene microRNA 6343
Tssr128 1 76596651 to 76596652 1 + TSS region transcription start site region 128
D1Mit133 1 76623936 to 76624172 236 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 133
D1Mit79 1 76627756 to 76627905 149 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 79
D1Mit162 1 76794554 to 76794683 129 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 162
D1Mit436 1 76823488 to 76823607 119 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 436
Gm816 1 76890472 to 77027792 137320 - lincRNA gene predicted gene 816
Tssr7561 1 77050293 to 77050294 1 + TSS region transcription start site region 7561
Gm2060 1 77050301 to 77050884 583 + pseudogene predicted gene 2060
Tssr7562 1 77065866 to 77065878 12 + TSS region transcription start site region 7562
Tfdp1-ps 1 77065870 to 77067692 1822 + pseudogene transcription factor Dp 1, pseudogene
Gm38265 1 77143227 to 77146992 3765 - unclassified gene predicted gene, 38265
Gm25974 1 77144753 to 77144846 93 + rRNA gene predicted gene, 25974
D1Mit132 1 77146478 to 77146623 145 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 132
Epha4 1 77367185 to 77515088 147903 - protein coding gene Eph receptor A4
D1Mit332 1 77403501 to 77403621 120 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 332
Tssr12416 1 77457264 to 77457272 8 - TSS region transcription start site region 12416
Tssr12417 1 77488697 to 77488701 4 - TSS region transcription start site region 12417
Mir6352 1 77496653 to 77496768 115 - miRNA gene microRNA 6352
Cpgi447 1 77513411 to 77513914 503 CpG island CpG island 447
Cpgi448 1 77514071 to 77515864 1793 CpG island CpG island 448
Tssr12418 1 77515048 to 77515102 54 - TSS region transcription start site region 12418
Gm28386 1 77515280 to 77517128 1848 + lincRNA gene predicted gene 28386
Cpgi449 1 77516080 to 77516903 823 CpG island CpG island 449
Gm32793 1 77522190 to 77602382 80192 + lncRNA gene predicted gene, 32793
Tssr7563 1 77522368 to 77522386 18 + TSS region transcription start site region 7563
Gm28385 1 77570672 to 77570963 291 + pseudogene predicted gene 28385
Gm32974 1 77604423 to 77642338 37915 + lncRNA gene predicted gene, 32974
Gm33083 1 77770548 to 77896298 125750 - lncRNA gene predicted gene, 33083
Gm33030 1 77813643 to 77915486 101843 + lncRNA gene predicted gene, 33030
Tssr7564 1 77848021 to 77848028 7 + TSS region transcription start site region 7564
Gm26263 1 77898283 to 77898446 163 - snRNA gene predicted gene, 26263
Tssr12419 1 77898437 to 77898447 10 - TSS region transcription start site region 12419
D1Mit253 1 77914689 to 77914834 145 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 253
Gm28387 1 77942966 to 77972376 29410 - lincRNA gene predicted gene 28387
Tssr7565 1 77951432 to 77951439 7 + TSS region transcription start site region 7565
Cpgi450 1 78081769 to 78082060 291 CpG island CpG island 450
Pax3 1 78101267 to 78197134 95867 - protein coding gene paired box 3
Tssr12420 1 78174734 to 78174740 6 - TSS region transcription start site region 12420
Cpgi451 1 78189547 to 78190114 567 CpG island CpG island 451
Cpgi452 1 78195211 to 78195443 232 CpG island CpG island 452
Cpgi453 1 78196277 to 78197346 1069 CpG island CpG island 453
Tssr12421 1 78196792 to 78196820 28 - TSS region transcription start site region 12421
Tssr12422 1 78196832 to 78196845 13 - TSS region transcription start site region 12422
Tssr12423 1 78197112 to 78197117 5 - TSS region transcription start site region 12423
Gm33152 1 78199984 to 78203051 3067 + lncRNA gene predicted gene, 33152
Tssr7566 1 78201212 to 78201246 34 + TSS region transcription start site region 7566
Cpgi454 1 78201468 to 78201927 459 CpG island CpG island 454
Cpgi455 1 78203650 to 78204206 556 CpG island CpG island 455
D1Mit215 1 78206359 to 78206507 148 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 215
Gm2102 1 78214964 to 78218978 4014 - protein coding gene predicted gene 2102
Cpgi456 1 78215877 to 78218237 2360 CpG island CpG island 456
n-TPagg1 1 78297795 to 78297866 71 + tRNA gene nuclear encoded tRNA proline 1 (anticodon AGG)
Tssr7567 1 78309555 to 78309568 13 + TSS region transcription start site region 7567
Cpgi457 1 78309968 to 78311013 1045 CpG island CpG island 457
Tssr7568 1 78310295 to 78310375 80 + TSS region transcription start site region 7568
Sgpp2 1 78310345 to 78420289 109944 + protein coding gene sphingosine-1-phosphate phosphotase 2
Tssr7569 1 78310377 to 78310386 9 + TSS region transcription start site region 7569
Tssr7570 1 78310391 to 78310400 9 + TSS region transcription start site region 7570
Tssr12424 1 78311976 to 78311979 3 - TSS region transcription start site region 12424
Gm28410 1 78325628 to 78340106 14478 - antisense lncRNA gene predicted gene 28410
Gm37884 1 78375614 to 78376431 817 + unclassified gene predicted gene, 37884
Gm19072 1 78414073 to 78414699 626 - pseudogene predicted gene, 19072
Farsb 1 78417975 to 78488897 70922 - protein coding gene phenylalanyl-tRNA synthetase, beta subunit
Tssr12425 1 78422694 to 78422711 17 - TSS region transcription start site region 12425
Gm28995 1 78433352 to 78433612 260 + pseudogene predicted gene 28995
4833412K13Rik 1 78465448 to 78466926 1478 - unclassified gene RIKEN cDNA 4833412K13 gene
Cpgi458 1 78488342 to 78489004 662 CpG island CpG island 458
Tssr12426 1 78488849 to 78488866 17 - TSS region transcription start site region 12426
BC035947 1 78497026 to 78512158 15132 - protein coding gene cDNA sequence BC035947
Mogat1 1 78510991 to 78538173 27182 + protein coding gene monoacylglycerol O-acyltransferase 1
Cpgi459 1 78511712 to 78512159 447 CpG island CpG island 459
Tssr7571 1 78511743 to 78511762 19 + TSS region transcription start site region 7571
Tssr7572 1 78511805 to 78511816 11 + TSS region transcription start site region 7572
Tssr7573 1 78511836 to 78511847 11 + TSS region transcription start site region 7573
Tssr7574 1 78511865 to 78511896 31 + TSS region transcription start site region 7574
Tssr7575 1 78511904 to 78511921 17 + TSS region transcription start site region 7575
Tssr7576 1 78526569 to 78526602 33 + TSS region transcription start site region 7576
Tssr12427 1 78537498 to 78537507 9 - TSS region transcription start site region 12427
Cpgi460 1 78537571 to 78537914 343 CpG island CpG island 460
Tssr7577 1 78537938 to 78537941 3 + TSS region transcription start site region 7577
Tssr7578 1 78537962 to 78537972 10 + TSS region transcription start site region 7578
Tssr7579 1 78537979 to 78537992 13 + TSS region transcription start site region 7579
Gm39665 1 78560045 to 78588394 28349 - lncRNA gene predicted gene, 39665
5730419F03Rik 1 78595031 to 78609508 14477 - lincRNA gene RIKEN cDNA 5730419F03 gene
Tssr7580 1 78602342 to 78602364 22 + TSS region transcription start site region 7580
Gm29611 1 78615467 to 78620165 4698 + lincRNA gene predicted gene 29611
Cpgi461 1 78657494 to 78658629 1135 CpG island CpG island 461
Acsl3 1 78657825 to 78707743 49918 + protein coding gene acyl-CoA synthetase long-chain family member 3
Utp14b 1 78657825 to 78667601 9776 + protein coding gene UTP14B small subunit processome component
Tssr7581 1 78657856 to 78657868 12 + TSS region transcription start site region 7581
Tssr7582 1 78657874 to 78657889 15 + TSS region transcription start site region 7582
Tssr12428 1 78658273 to 78658282 9 - TSS region transcription start site region 12428
Tssr12429 1 78658290 to 78658309 19 - TSS region transcription start site region 12429
Tssr7583 1 78669511 to 78669530 19 + TSS region transcription start site region 7583
Tssr7584 1 78674203 to 78674208 5 + TSS region transcription start site region 7584
Tssr12430 1 78680686 to 78680720 34 - TSS region transcription start site region 12430
Gm38631 1 78719984 to 78746154 26170 + lncRNA gene predicted gene, 38631
Gm33693 1 78726659 to 78740969 14310 - lncRNA gene predicted gene, 33693
Tssr7585 1 78738126 to 78738158 32 + TSS region transcription start site region 7585
Gm6159 1 78783136 to 78784859 1723 - pseudogene predicted gene 6159
Gm29536 1 78791623 to 79224511 432888 - lincRNA gene predicted gene 29536
Tssr7586 1 78816909 to 78816913 4 + TSS region transcription start site region 7586
Kcne4 1 78816949 to 78820025 3076 + protein coding gene potassium voltage-gated channel, Isk-related subfamily, gene 4
Gm29187 1 78821258 to 78822652 1394 + lincRNA gene predicted gene 29187
Gm5830 1 78967637 to 78968079 442 - pseudogene predicted pseudogene 5830
Tssr12431 1 78968084 to 78968100 16 - TSS region transcription start site region 12431
Tssr7587 1 79197747 to 79197757 10 + TSS region transcription start site region 7587
Tssr129 1 79335029 to 79335034 5 + TSS region transcription start site region 129
Tssr12432 1 79371729 to 79371732 3 - TSS region transcription start site region 12432
Scg2 1 79434669 to 79440090 5421 - protein coding gene secretogranin II
Tssr12433 1 79436252 to 79436265 13 - TSS region transcription start site region 12433
Tssr12434 1 79436329 to 79436348 19 - TSS region transcription start site region 12434
Cpgi462 1 79439983 to 79440138 155 CpG island CpG island 462
Tssr12435 1 79440003 to 79440014 11 - TSS region transcription start site region 12435
Tssr12436 1 79440015 to 79440035 20 - TSS region transcription start site region 12436
Tssr12437 1 79440039 to 79440080 41 - TSS region transcription start site region 12437
Tssr12438 1 79440103 to 79440108 5 - TSS region transcription start site region 12438
Cpgi463 1 79450405 to 79450565 160 CpG island CpG island 463
Gm19027 1 79505803 to 79507157 1354 - pseudogene predicted gene, 19027
Gm24160 1 79513739 to 79513864 125 - snoRNA gene predicted gene, 24160
Ap1s3 1 79606876 to 79671972 65096 - protein coding gene adaptor-related protein complex AP-1, sigma 3
Gm37886 1 79619522 to 79621034 1512 - unclassified gene predicted gene, 37886
Tssr12439 1 79666817 to 79666820 3 - TSS region transcription start site region 12439
Tssr12440 1 79670166 to 79670167 1 - TSS region transcription start site region 12440
Cpgi464 1 79671518 to 79672402 884 CpG island CpG island 464
Tssr12441 1 79671966 to 79671993 27 - TSS region transcription start site region 12441
Tssr12442 1 79672084 to 79672088 4 - TSS region transcription start site region 12442
Wdfy1 1 79702262 to 79776047 73785 - protein coding gene WD repeat and FYVE domain containing 1
Cpgi465 1 79760852 to 79761111 259 CpG island CpG island 465
Cpgi466 1 79761190 to 79761994 804 CpG island CpG island 466
Tssr12443 1 79761698 to 79761748 50 - TSS region transcription start site region 12443
Tssr12444 1 79761752 to 79761774 22 - TSS region transcription start site region 12444
Tssr12445 1 79761783 to 79761794 11 - TSS region transcription start site region 12445
Tssr12446 1 79762430 to 79762443 13 - TSS region transcription start site region 12446
Gm10555 1 79762717 to 79764507 1790 + unclassified gene predicted gene 10555
Tssr12447 1 79762930 to 79762965 35 - TSS region transcription start site region 12447
Cpgi467 1 79775910 to 79776451 541 CpG island CpG island 467
Mrpl44 1 79776018 to 79781445 5427 + protein coding gene mitochondrial ribosomal protein L44
Tssr7588 1 79776096 to 79776132 36 + TSS region transcription start site region 7588
Tssr7589 1 79776250 to 79776262 12 + TSS region transcription start site region 7589
Gm39666 1 79787924 to 79794121 6197 + lncRNA gene predicted gene, 39666
Serpine2 1 79794317 to 79858665 64348 - protein coding gene serine (or cysteine) peptidase inhibitor, clade E, member 2
D1Mit216 1 79806194 to 79806313 119 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 216
5730433N10Rik 1 79838919 to 79840373 1454 unclassified gene RIKEN cDNA 5730433N10 gene
Tssr7590 1 79855953 to 79855988 35 + TSS region transcription start site region 7590
Tssr7591 1 79857503 to 79857506 3 + TSS region transcription start site region 7591
Cpgi468 1 79858066 to 79859290 1224 CpG island CpG island 468
Tssr12448 1 79858627 to 79858643 16 - TSS region transcription start site region 12448
Tssr12449 1 79861294 to 79861303 9 - TSS region transcription start site region 12449
Gm5529 1 79922536 to 79923426 890 - pseudogene predicted pseudogene 5529
Tssr12450 1 79923502 to 79923508 6 - TSS region transcription start site region 12450
Gm28071 1 79957580 to 79958057 477 + pseudogene predicted gene 28071
Mota1 1 79958656 to 80270207 311551 QTL motor activity 1
Tssr12451 1 80033653 to 80033662 9 - TSS region transcription start site region 12451
Gm33970 1 80037178 to 80038461 1283 - lncRNA gene predicted gene, 33970
Gm28058 1 80098622 to 80098885 263 + pseudogene predicted gene 28058
Gm23934 1 80135466 to 80135572 106 + snRNA gene predicted gene, 23934
Gm38339 1 80146973 to 80148801 1828 - unclassified gene predicted gene, 38339
Tssr12452 1 80177756 to 80177770 14 - TSS region transcription start site region 12452
9830004L10Rik 1 80184719 to 80192073 7354 + lincRNA gene RIKEN cDNA 9830004L10 gene
Fam124b 1 80198699 to 80214205 15506 - protein coding gene family with sequence similarity 124, member B
Cpgi469 1 80200139 to 80200295 156 CpG island CpG island 469
Tssr12453 1 80213839 to 80213854 15 - TSS region transcription start site region 12453
Tssr12454 1 80213931 to 80213949 18 - TSS region transcription start site region 12454
Tssr12455 1 80218451 to 80218457 6 - TSS region transcription start site region 12455
Tssr7592 1 80225040 to 80225052 12 + TSS region transcription start site region 7592
2310015K22Rik 1 80225044 to 80228792 3748 + lincRNA gene RIKEN cDNA 2310015K22 gene
Gm34098 1 80236352 to 80248414 12062 + lncRNA gene predicted gene, 34098
Gm37932 1 80255031 to 80256197 1166 - unclassified gene predicted gene, 37932
Cul3 1 80264923 to 80340480 75557 - protein coding gene cullin 3
D1Mit134 1 80267876 to 80268019 143 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 134
Gm37902 1 80274731 to 80276413 1682 - unclassified gene predicted gene, 37902
Tssr12456 1 80276511 to 80276550 39 - TSS region transcription start site region 12456
Tssr12457 1 80277439 to 80277451 12 - TSS region transcription start site region 12457
Tssr12458 1 80287661 to 80287665 4 - TSS region transcription start site region 12458
Tssr12459 1 80289738 to 80289757 19 - TSS region transcription start site region 12459
Tssr12460 1 80289880 to 80289884 4 - TSS region transcription start site region 12460
Gm37262 1 80326177 to 80327994 1817 - unclassified gene predicted gene, 37262
Tssr12461 1 80329148 to 80329149 1 - TSS region transcription start site region 12461
Cpgi470 1 80339637 to 80341249 1612 CpG island CpG island 470
Tssr12462 1 80340343 to 80340354 11 - TSS region transcription start site region 12462
Tssr12463 1 80340384 to 80340395 11 - TSS region transcription start site region 12463
Tssr12464 1 80340501 to 80340512 11 - TSS region transcription start site region 12464
Tssr12465 1 80340532 to 80340543 11 - TSS region transcription start site region 12465
Tssr12466 1 80340602 to 80340613 11 - TSS region transcription start site region 12466
Tssr12467 1 80340617 to 80340648 31 - TSS region transcription start site region 12467
Tssr12468 1 80340653 to 80340675 22 - TSS region transcription start site region 12468