Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:75322756-77932905

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168 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
dde 1 70367239 to 76794683 6427444 heritable phenotypic marker disproportionate dwarf and eye defect
D1Mit61 1 75338203 to 75338349 146 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 61
Cpgi423 1 75360175 to 75361340 1165 CpG island CpG island 423
Tssr7513 1 75360222 to 75360249 27 + TSS region transcription start site region 7513
Tssr7514 1 75360321 to 75360338 17 + TSS region transcription start site region 7514
Des 1 75360329 to 75368579 8250 + protein coding gene desmin
Tssr7515 1 75360342 to 75360353 11 + TSS region transcription start site region 7515
Tssr7516 1 75362015 to 75362044 29 + TSS region transcription start site region 7516
Tssr7517 1 75362049 to 75362064 15 + TSS region transcription start site region 7517
Tssr12398 1 75362182 to 75362223 41 - TSS region transcription start site region 12398
Tssr12399 1 75366811 to 75366847 36 - TSS region transcription start site region 12399
Tssr7518 1 75367127 to 75367166 39 + TSS region transcription start site region 7518
Tssr7519 1 75367642 to 75367689 47 + TSS region transcription start site region 7519
Gm15179 1 75368212 to 75375012 6800 - antisense lncRNA gene predicted gene 15179
Cpgi424 1 75369517 to 75369887 370 CpG island CpG island 424
Tssr12400 1 75370448 to 75370485 37 - TSS region transcription start site region 12400
Tssr12401 1 75375002 to 75375031 29 - TSS region transcription start site region 12401
Cpgi425 1 75375224 to 75375917 693 CpG island CpG island 425
Tssr7520 1 75375271 to 75375325 54 + TSS region transcription start site region 7520
Speg 1 75375297 to 75432320 57023 + protein coding gene SPEG complex locus
Tssr7521 1 75375328 to 75375339 11 + TSS region transcription start site region 7521
Cpgi426 1 75381618 to 75382707 1089 CpG island CpG island 426
Tssr7522 1 75381631 to 75381650 19 + TSS region transcription start site region 7522
Tssr7523 1 75381651 to 75381663 12 + TSS region transcription start site region 7523
Tssr7524 1 75382119 to 75382149 30 + TSS region transcription start site region 7524
Tssr7525 1 75383585 to 75383588 3 + TSS region transcription start site region 7525
Tssr7526 1 75384669 to 75384682 13 + TSS region transcription start site region 7526
Cpgi427 1 75384673 to 75385402 729 CpG island CpG island 427
Tssr7527 1 75385544 to 75385601 57 + TSS region transcription start site region 7527
Cpgi428 1 75387605 to 75389255 1650 CpG island CpG island 428
Gm15178 1 75392131 to 75396363 4232 - antisense lncRNA gene predicted gene 15178
Tssr7528 1 75400070 to 75400163 93 + TSS region transcription start site region 7528
Tssr7529 1 75400174 to 75400185 11 + TSS region transcription start site region 7529
Tssr124 1 75400972 to 75401020 48 + TSS region transcription start site region 124
Cpgi429 1 75421895 to 75423628 1733 CpG island CpG island 429
Cpgi430 1 75435808 to 75436253 445 CpG island CpG island 430
Gmppa 1 75435930 to 75443179 7249 + protein coding gene GDP-mannose pyrophosphorylase A
Tssr7530 1 75435937 to 75435992 55 + TSS region transcription start site region 7530
Tssr7531 1 75436002 to 75436013 11 + TSS region transcription start site region 7531
Tssr7532 1 75439227 to 75439238 11 + TSS region transcription start site region 7532
Tssr7533 1 75441006 to 75441028 22 + TSS region transcription start site region 7533
Tssr7534 1 75442372 to 75442389 17 + TSS region transcription start site region 7534
Cpgi431 1 75445846 to 75446044 198 CpG island CpG island 431
Cpgi432 1 75449082 to 75449358 276 CpG island CpG island 432
Tssr125 1 75449723 to 75449724 1 + TSS region transcription start site region 125
Cpgi433 1 75450225 to 75450826 601 CpG island CpG island 433
Tssr7535 1 75450500 to 75450516 16 + TSS region transcription start site region 7535
Asic4 1 75450510 to 75474340 23830 + protein coding gene acid-sensing (proton-gated) ion channel family member 4
Tssr7536 1 75450582 to 75450614 32 + TSS region transcription start site region 7536
Tssr7537 1 75450713 to 75450731 18 + TSS region transcription start site region 7537
Gm32506 1 75455521 to 75459955 4434 - lncRNA gene predicted gene, 32506
Cpgi434 1 75458356 to 75458876 520 CpG island CpG island 434
Gm37264 1 75468570 to 75470761 2191 - unclassified gene predicted gene, 37264
Chpf 1 75474569 to 75479307 4738 - protein coding gene chondroitin polymerizing factor
Cpgi435 1 75475873 to 75476189 316 CpG island CpG island 435
Cpgi436 1 75477224 to 75477830 606 CpG island CpG island 436
Cpgi437 1 75478569 to 75480031 1462 CpG island CpG island 437
Tssr12402 1 75479103 to 75479124 21 - TSS region transcription start site region 12402
Tssr12403 1 75479125 to 75479142 17 - TSS region transcription start site region 12403
Tssr12404 1 75479148 to 75479159 11 - TSS region transcription start site region 12404
Tssr12405 1 75479161 to 75479168 7 - TSS region transcription start site region 12405
Tssr12406 1 75479284 to 75479358 74 - TSS region transcription start site region 12406
Tssr12407 1 75479389 to 75479404 15 - TSS region transcription start site region 12407
Tssr7538 1 75479506 to 75479517 11 + TSS region transcription start site region 7538
Tssr7539 1 75479529 to 75479593 64 + TSS region transcription start site region 7539
Tmem198 1 75479532 to 75485693 6161 + protein coding gene transmembrane protein 198
Cpgi438 1 75482654 to 75483079 425 CpG island CpG island 438
Obsl1 1 75485825 to 75506658 20833 - protein coding gene obscurin-like 1
Cpgi439 1 75486643 to 75488306 1663 CpG island CpG island 439
Cpgi440 1 75492925 to 75493108 183 CpG island CpG island 440
Tssr7540 1 75495429 to 75495436 7 + TSS region transcription start site region 7540
Cpgi441 1 75503553 to 75504018 465 CpG island CpG island 441
Cpgi442 1 75505120 to 75506719 1599 CpG island CpG island 442
Tssr7541 1 75505589 to 75505628 39 + TSS region transcription start site region 7541
Tssr7542 1 75505629 to 75505675 46 + TSS region transcription start site region 7542
Tssr12408 1 75505691 to 75505703 12 - TSS region transcription start site region 12408
Tssr7543 1 75505738 to 75505749 11 + TSS region transcription start site region 7543
Tssr12409 1 75506331 to 75506402 71 - TSS region transcription start site region 12409
Tssr12410 1 75506413 to 75506424 11 - TSS region transcription start site region 12410
Tssr12411 1 75506434 to 75506459 25 - TSS region transcription start site region 12411
Tssr12412 1 75506462 to 75506490 28 - TSS region transcription start site region 12412
Tssr12413 1 75506639 to 75506650 11 - TSS region transcription start site region 12413
D1Mit131 1 75506845 to 75506964 119 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 131
D1Mcg8 1 75506851 to 75506966 115 DNA segment DNA segment, Chr 1, McGill University 8
Inha 1 75507077 to 75510366 3289 + protein coding gene inhibin alpha
Tssr7544 1 75507167 to 75507184 17 + TSS region transcription start site region 7544
Tssr7545 1 75507190 to 75507201 11 + TSS region transcription start site region 7545
Tssr7546 1 75507219 to 75507244 25 + TSS region transcription start site region 7546
Tssr7547 1 75507414 to 75507455 41 + TSS region transcription start site region 7547
Cpgi443 1 75509580 to 75509992 412 CpG island CpG island 443
Tssr7548 1 75509747 to 75509769 22 + TSS region transcription start site region 7548
Tssr7549 1 75510032 to 75510034 2 + TSS region transcription start site region 7549
Gm15181 1 75514107 to 75514283 176 - pseudogene predicted gene 15181
Cpgi444 1 75521404 to 75522000 596 CpG island CpG island 444
Tssr7550 1 75521521 to 75521602 81 + TSS region transcription start site region 7550
Stk11ip 1 75521529 to 75537335 15806 + protein coding gene serine/threonine kinase 11 interacting protein
Tssr7551 1 75521757 to 75521801 44 + TSS region transcription start site region 7551
Tssr7552 1 75521806 to 75521821 15 + TSS region transcription start site region 7552
Tssr7553 1 75524988 to 75524999 11 + TSS region transcription start site region 7553
Gm15183 1 75542211 to 75542558 347 + pseudogene predicted gene 15183
Slc4a3 1 75545914 to 75559431 13517 + protein coding gene solute carrier family 4 (anion exchanger), member 3
Cpgi445 1 75546013 to 75546922 909 CpG island CpG island 445
Tssr7554 1 75546057 to 75546095 38 + TSS region transcription start site region 7554
Tssr7555 1 75546258 to 75546312 54 + TSS region transcription start site region 7555
Tssr7556 1 75546449 to 75546514 65 + TSS region transcription start site region 7556
Tssr7557 1 75546522 to 75546541 19 + TSS region transcription start site region 7557
Tssr7558 1 75546640 to 75546654 14 + TSS region transcription start site region 7558
Tssr7559 1 75549581 to 75549626 45 + TSS region transcription start site region 7559
Tssr7560 1 75549731 to 75549748 17 + TSS region transcription start site region 7560
Tssr12414 1 75549810 to 75549816 6 - TSS region transcription start site region 12414
Gm15180 1 75568083 to 75568574 491 + pseudogene predicted gene 15180
D1Mit46 1 75572547 to 75572799 252 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 46
Alcw5 1 75572547 to 75572799 252 QTL alcohol withdrawal 5
Lore1 1 75572547 to 93013355 17440808 QTL loss of righting induced by ethanol 1
Lxw5 1 75572547 to 75572799 252 QTL lupus BXSB x NZW 5
Tssr12415 1 75606503 to 75606530 27 - TSS region transcription start site region 12415
Gm15182 1 75624654 to 75626329 1675 + pseudogene predicted gene 15182
Gm5257 1 75636390 to 75637179 789 + pseudogene predicted gene 5257
Tssr126 1 75637037 to 75637038 1 + TSS region transcription start site region 126
Cpgi446 1 75654569 to 75654785 216 CpG island CpG island 446
D1Mit331 1 75833834 to 75833993 159 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 331
Tssr127 1 75885426 to 75885432 6 + TSS region transcription start site region 127
D1Mit284 1 75915229 to 75915317 88 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 284
Gm32622 1 75936719 to 76094342 157623 + lncRNA gene predicted gene, 32622
Gm29065 1 76016658 to 76018756 2098 - lincRNA gene predicted gene 29065
Gm32737 1 76094981 to 76106216 11235 + lncRNA gene predicted gene, 32737
Gm29068 1 76110181 to 76110580 399 - pseudogene predicted gene 29068
D1Mit333 1 76366572 to 76366673 101 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 333
D1Mit484 1 76386343 to 76386457 114 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 484
Gm29069 1 76420692 to 76528422 107730 + lincRNA gene predicted gene 29069
D1Mit483.1 1 76454674 to 76454789 115 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 483.1
D1Mit483 1 76454848 to 76454963 115 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 483
Gm17751 1 76489133 to 76502028 12895 + lincRNA gene predicted gene, 17751
Mir6343 1 76509560 to 76509643 83 + miRNA gene microRNA 6343
Tssr128 1 76596651 to 76596652 1 + TSS region transcription start site region 128
D1Mit133 1 76623936 to 76624172 236 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 133
D1Mit79 1 76627756 to 76627905 149 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 79
D1Mit162 1 76794554 to 76794683 129 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 162
D1Mit436 1 76823488 to 76823607 119 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 436
Gm816 1 76890472 to 77027792 137320 - lincRNA gene predicted gene 816
Tssr7561 1 77050293 to 77050294 1 + TSS region transcription start site region 7561
Gm2060 1 77050301 to 77050884 583 + pseudogene predicted gene 2060
Tssr7562 1 77065866 to 77065878 12 + TSS region transcription start site region 7562
Tfdp1-ps 1 77065870 to 77067692 1822 + pseudogene transcription factor Dp 1, pseudogene
Gm38265 1 77143227 to 77146992 3765 - unclassified gene predicted gene, 38265
Gm25974 1 77144753 to 77144846 93 + rRNA gene predicted gene, 25974
D1Mit132 1 77146478 to 77146623 145 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 132
Epha4 1 77367185 to 77515088 147903 - protein coding gene Eph receptor A4
D1Mit332 1 77403501 to 77403621 120 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 332
Tssr12416 1 77457264 to 77457272 8 - TSS region transcription start site region 12416
Tssr12417 1 77488697 to 77488701 4 - TSS region transcription start site region 12417
Mir6352 1 77496653 to 77496768 115 - miRNA gene microRNA 6352
Cpgi447 1 77513411 to 77513914 503 CpG island CpG island 447
Cpgi448 1 77514071 to 77515864 1793 CpG island CpG island 448
Tssr12418 1 77515048 to 77515102 54 - TSS region transcription start site region 12418
Gm28386 1 77515280 to 77517128 1848 + lincRNA gene predicted gene 28386
Cpgi449 1 77516080 to 77516903 823 CpG island CpG island 449
Gm32793 1 77522190 to 77602382 80192 + lncRNA gene predicted gene, 32793
Tssr7563 1 77522368 to 77522386 18 + TSS region transcription start site region 7563
Gm28385 1 77570672 to 77570963 291 + pseudogene predicted gene 28385
Gm32974 1 77604423 to 77642338 37915 + lncRNA gene predicted gene, 32974
Gm33083 1 77770548 to 77896298 125750 - lncRNA gene predicted gene, 33083
Gm33030 1 77813643 to 77915486 101843 + lncRNA gene predicted gene, 33030
Tssr7564 1 77848021 to 77848028 7 + TSS region transcription start site region 7564
Gm26263 1 77898283 to 77898446 163 - snRNA gene predicted gene, 26263
Tssr12419 1 77898437 to 77898447 10 - TSS region transcription start site region 12419
D1Mit253 1 77914689 to 77914834 145 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 253
Mord2 1 110608345 to 77146478 -33461867 QTL modifier of retinal degeneration 2