Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:75189569-76119785

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201 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Atg9a 1 75180861 to 75192010 11149 - protein coding gene autophagy related 9A
Tssr12362 1 75190350 to 75190381 31 - TSS region transcription start site region 12362
Cpgi414 1 75191406 to 75192783 1377 CpG island CpG island 414
Tssr12363 1 75191682 to 75191735 53 - TSS region transcription start site region 12363
Tssr12364 1 75191934 to 75191997 63 - TSS region transcription start site region 12364
Tssr12365 1 75192004 to 75192016 12 - TSS region transcription start site region 12365
Tssr7498 1 75192143 to 75192230 87 + TSS region transcription start site region 7498
Ankzf1 1 75192160 to 75199387 7227 + protein coding gene ankyrin repeat and zinc finger domain containing 1
Tssr12366 1 75192631 to 75192682 51 - TSS region transcription start site region 12366
Glb1l 1 75198236 to 75210813 12577 - protein coding gene galactosidase, beta 1-like
Cpgi415 1 75209151 to 75209591 440 CpG island CpG island 415
Tssr12367 1 75209429 to 75209476 47 - TSS region transcription start site region 12367
Gm27943 1 75209613 to 75209728 115 - miRNA gene predicted gene, 27943
Cpgi416 1 75210685 to 75211335 650 CpG island CpG island 416
Tssr123 1 75210717 to 75210730 13 - TSS region transcription start site region 123
Tssr12368 1 75210732 to 75210807 75 - TSS region transcription start site region 12368
Tssr7499 1 75210832 to 75210910 78 + TSS region transcription start site region 7499
Stk16 1 75210838 to 75215606 4768 + protein coding gene serine/threonine kinase 16
Tuba4a 1 75214972 to 75219860 4888 - protein coding gene tubulin, alpha 4A
Tssr12369 1 75216438 to 75216450 12 - TSS region transcription start site region 12369
Tssr12370 1 75216516 to 75216546 30 - TSS region transcription start site region 12370
Tssr12371 1 75216949 to 75216971 22 - TSS region transcription start site region 12371
Tssr12372 1 75217294 to 75217304 10 - TSS region transcription start site region 12372
Tssr12373 1 75218483 to 75218494 11 - TSS region transcription start site region 12373
Cpgi417 1 75218497 to 75220225 1728 CpG island CpG island 417
Tssr12374 1 75219245 to 75219262 17 - TSS region transcription start site region 12374
Tssr12375 1 75219853 to 75219891 38 - TSS region transcription start site region 12375
Tssr12376 1 75219911 to 75219922 11 - TSS region transcription start site region 12376
A630095N17Rik 1 75220095 to 75232102 12007 - protein coding gene RIKEN cDNA A630095N17 gene
Cpgi418 1 75236176 to 75237113 937 CpG island CpG island 418
Tssr12377 1 75236261 to 75236283 22 - TSS region transcription start site region 12377
Tssr12378 1 75236325 to 75236348 23 - TSS region transcription start site region 12378
Tssr7500 1 75236400 to 75236429 29 + TSS region transcription start site region 7500
Dnajb2 1 75236406 to 75245692 9286 + protein coding gene DnaJ heat shock protein family (Hsp40) member B2
Tssr7501 1 75236439 to 75236469 30 + TSS region transcription start site region 7501
Tssr7502 1 75236471 to 75236492 21 + TSS region transcription start site region 7502
Tssr7503 1 75236498 to 75236521 23 + TSS region transcription start site region 7503
Tssr7504 1 75236527 to 75236548 21 + TSS region transcription start site region 7504
Tssr7505 1 75236577 to 75236588 11 + TSS region transcription start site region 7505
Tssr7506 1 75236616 to 75236627 11 + TSS region transcription start site region 7506
Tssr7507 1 75236659 to 75236665 6 + TSS region transcription start site region 7507
Tssr7508 1 75236753 to 75236761 8 + TSS region transcription start site region 7508
Tssr7509 1 75236765 to 75236803 38 + TSS region transcription start site region 7509
Tssr12379 1 75236863 to 75236882 19 - TSS region transcription start site region 12379
Tssr7510 1 75236964 to 75236972 8 + TSS region transcription start site region 7510
Tssr7511 1 75236973 to 75236991 18 + TSS region transcription start site region 7511
Ptprn 1 75247035 to 75264497 17462 - protein coding gene protein tyrosine phosphatase, receptor type, N
Tssr7512 1 75247189 to 75247197 8 + TSS region transcription start site region 7512
Cpgi419 1 75251616 to 75252029 413 CpG island CpG island 419
Gm28294 1 75252322 to 75257427 5105 + antisense lncRNA gene predicted gene 28294
Tssr12380 1 75255849 to 75255867 18 - TSS region transcription start site region 12380
Tssr12381 1 75256823 to 75256847 24 - TSS region transcription start site region 12381
Cpgi420 1 75263495 to 75264296 801 CpG island CpG island 420
Tssr12382 1 75264134 to 75264194 60 - TSS region transcription start site region 12382
Tssr12383 1 75264195 to 75264219 24 - TSS region transcription start site region 12383
Tssr12384 1 75264239 to 75264240 1 - TSS region transcription start site region 12384
Tssr12385 1 75264266 to 75264275 9 - TSS region transcription start site region 12385
Tssr12386 1 75264279 to 75264288 9 - TSS region transcription start site region 12386
Tssr12387 1 75264676 to 75264693 17 - TSS region transcription start site region 12387
Resp18 1 75272199 to 75278415 6216 - protein coding gene regulated endocrine-specific protein 18
Gm28902 1 75272605 to 75275652 3047 + antisense lncRNA gene predicted gene 28902
Cpgi421 1 75278191 to 75278364 173 CpG island CpG island 421
Tssr12388 1 75278345 to 75278440 95 - TSS region transcription start site region 12388
Tssr12389 1 75278441 to 75278455 14 - TSS region transcription start site region 12389
D1Mcg7 1 75305074 to 75305285 211 DNA segment DNA segment, Chr 1, McGill University 7
Dnpep 1 75308565 to 75317654 9089 - protein coding gene aspartyl aminopeptidase
Cpgi422 1 75316504 to 75318193 1689 CpG island CpG island 422
Tssr12390 1 75316914 to 75316937 23 - TSS region transcription start site region 12390
Tssr12391 1 75316946 to 75316982 36 - TSS region transcription start site region 12391
Tssr12392 1 75316998 to 75317025 27 - TSS region transcription start site region 12392
Tssr12393 1 75317163 to 75317177 14 - TSS region transcription start site region 12393
Tssr12394 1 75317299 to 75317342 43 - TSS region transcription start site region 12394
Tssr12395 1 75317360 to 75317491 131 - TSS region transcription start site region 12395
Tssr12396 1 75317536 to 75317545 9 - TSS region transcription start site region 12396
Tssr12397 1 75317590 to 75317612 22 - TSS region transcription start site region 12397
D1Mit61 1 75338203 to 75338349 146 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 61
Cpgi423 1 75360175 to 75361340 1165 CpG island CpG island 423
Tssr7513 1 75360222 to 75360249 27 + TSS region transcription start site region 7513
Tssr7514 1 75360321 to 75360338 17 + TSS region transcription start site region 7514
Des 1 75360329 to 75368579 8250 + protein coding gene desmin
Tssr7515 1 75360342 to 75360353 11 + TSS region transcription start site region 7515
Tssr7516 1 75362015 to 75362044 29 + TSS region transcription start site region 7516
Tssr7517 1 75362049 to 75362064 15 + TSS region transcription start site region 7517
Tssr12398 1 75362182 to 75362223 41 - TSS region transcription start site region 12398
Tssr12399 1 75366811 to 75366847 36 - TSS region transcription start site region 12399
Tssr7518 1 75367127 to 75367166 39 + TSS region transcription start site region 7518
Tssr7519 1 75367642 to 75367689 47 + TSS region transcription start site region 7519
Gm15179 1 75368212 to 75375012 6800 - antisense lncRNA gene predicted gene 15179
Cpgi424 1 75369517 to 75369887 370 CpG island CpG island 424
Tssr12400 1 75370448 to 75370485 37 - TSS region transcription start site region 12400
Tssr12401 1 75375002 to 75375031 29 - TSS region transcription start site region 12401
Cpgi425 1 75375224 to 75375917 693 CpG island CpG island 425
Tssr7520 1 75375271 to 75375325 54 + TSS region transcription start site region 7520
Speg 1 75375297 to 75432320 57023 + protein coding gene SPEG complex locus
Tssr7521 1 75375328 to 75375339 11 + TSS region transcription start site region 7521
Cpgi426 1 75381618 to 75382707 1089 CpG island CpG island 426
Tssr7522 1 75381631 to 75381650 19 + TSS region transcription start site region 7522
Tssr7523 1 75381651 to 75381663 12 + TSS region transcription start site region 7523
Tssr7524 1 75382119 to 75382149 30 + TSS region transcription start site region 7524
Tssr7525 1 75383585 to 75383588 3 + TSS region transcription start site region 7525
Tssr7526 1 75384669 to 75384682 13 + TSS region transcription start site region 7526
Cpgi427 1 75384673 to 75385402 729 CpG island CpG island 427
Tssr7527 1 75385544 to 75385601 57 + TSS region transcription start site region 7527
Cpgi428 1 75387605 to 75389255 1650 CpG island CpG island 428
Gm15178 1 75392131 to 75396363 4232 - antisense lncRNA gene predicted gene 15178
Tssr7528 1 75400070 to 75400163 93 + TSS region transcription start site region 7528
Tssr7529 1 75400174 to 75400185 11 + TSS region transcription start site region 7529
Tssr124 1 75400972 to 75401020 48 + TSS region transcription start site region 124
Cpgi429 1 75421895 to 75423628 1733 CpG island CpG island 429
Cpgi430 1 75435808 to 75436253 445 CpG island CpG island 430
Gmppa 1 75435930 to 75443179 7249 + protein coding gene GDP-mannose pyrophosphorylase A
Tssr7530 1 75435937 to 75435992 55 + TSS region transcription start site region 7530
Tssr7531 1 75436002 to 75436013 11 + TSS region transcription start site region 7531
Tssr7532 1 75439227 to 75439238 11 + TSS region transcription start site region 7532
Tssr7533 1 75441006 to 75441028 22 + TSS region transcription start site region 7533
Tssr7534 1 75442372 to 75442389 17 + TSS region transcription start site region 7534
Cpgi431 1 75445846 to 75446044 198 CpG island CpG island 431
Cpgi432 1 75449082 to 75449358 276 CpG island CpG island 432
Tssr125 1 75449723 to 75449724 1 + TSS region transcription start site region 125
Cpgi433 1 75450225 to 75450826 601 CpG island CpG island 433
Tssr7535 1 75450500 to 75450516 16 + TSS region transcription start site region 7535
Asic4 1 75450510 to 75474340 23830 + protein coding gene acid-sensing (proton-gated) ion channel family member 4
Tssr7536 1 75450582 to 75450614 32 + TSS region transcription start site region 7536
Tssr7537 1 75450713 to 75450731 18 + TSS region transcription start site region 7537
Gm32506 1 75455521 to 75459955 4434 - lncRNA gene predicted gene, 32506
Cpgi434 1 75458356 to 75458876 520 CpG island CpG island 434
Gm37264 1 75468570 to 75470761 2191 - unclassified gene predicted gene, 37264
Chpf 1 75474569 to 75479307 4738 - protein coding gene chondroitin polymerizing factor
Cpgi435 1 75475873 to 75476189 316 CpG island CpG island 435
Cpgi436 1 75477224 to 75477830 606 CpG island CpG island 436
Cpgi437 1 75478569 to 75480031 1462 CpG island CpG island 437
Tssr12402 1 75479103 to 75479124 21 - TSS region transcription start site region 12402
Tssr12403 1 75479125 to 75479142 17 - TSS region transcription start site region 12403
Tssr12404 1 75479148 to 75479159 11 - TSS region transcription start site region 12404
Tssr12405 1 75479161 to 75479168 7 - TSS region transcription start site region 12405
Tssr12406 1 75479284 to 75479358 74 - TSS region transcription start site region 12406
Tssr12407 1 75479389 to 75479404 15 - TSS region transcription start site region 12407
Tssr7538 1 75479506 to 75479517 11 + TSS region transcription start site region 7538
Tssr7539 1 75479529 to 75479593 64 + TSS region transcription start site region 7539
Tmem198 1 75479532 to 75485693 6161 + protein coding gene transmembrane protein 198
Cpgi438 1 75482654 to 75483079 425 CpG island CpG island 438
Obsl1 1 75485825 to 75506658 20833 - protein coding gene obscurin-like 1
Cpgi439 1 75486643 to 75488306 1663 CpG island CpG island 439
Cpgi440 1 75492925 to 75493108 183 CpG island CpG island 440
Tssr7540 1 75495429 to 75495436 7 + TSS region transcription start site region 7540
Cpgi441 1 75503553 to 75504018 465 CpG island CpG island 441
Cpgi442 1 75505120 to 75506719 1599 CpG island CpG island 442
Tssr7541 1 75505589 to 75505628 39 + TSS region transcription start site region 7541
Tssr7542 1 75505629 to 75505675 46 + TSS region transcription start site region 7542
Tssr12408 1 75505691 to 75505703 12 - TSS region transcription start site region 12408
Tssr7543 1 75505738 to 75505749 11 + TSS region transcription start site region 7543
Tssr12409 1 75506331 to 75506402 71 - TSS region transcription start site region 12409
Tssr12410 1 75506413 to 75506424 11 - TSS region transcription start site region 12410
Tssr12411 1 75506434 to 75506459 25 - TSS region transcription start site region 12411
Tssr12412 1 75506462 to 75506490 28 - TSS region transcription start site region 12412
Tssr12413 1 75506639 to 75506650 11 - TSS region transcription start site region 12413
D1Mit131 1 75506845 to 75506964 119 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 131
D1Mcg8 1 75506851 to 75506966 115 DNA segment DNA segment, Chr 1, McGill University 8
Inha 1 75507077 to 75510366 3289 + protein coding gene inhibin alpha
Tssr7544 1 75507167 to 75507184 17 + TSS region transcription start site region 7544
Tssr7545 1 75507190 to 75507201 11 + TSS region transcription start site region 7545
Tssr7546 1 75507219 to 75507244 25 + TSS region transcription start site region 7546
Tssr7547 1 75507414 to 75507455 41 + TSS region transcription start site region 7547
Cpgi443 1 75509580 to 75509992 412 CpG island CpG island 443
Tssr7548 1 75509747 to 75509769 22 + TSS region transcription start site region 7548
Tssr7549 1 75510032 to 75510034 2 + TSS region transcription start site region 7549
Gm15181 1 75514107 to 75514283 176 - pseudogene predicted gene 15181
Cpgi444 1 75521404 to 75522000 596 CpG island CpG island 444
Tssr7550 1 75521521 to 75521602 81 + TSS region transcription start site region 7550
Stk11ip 1 75521529 to 75537335 15806 + protein coding gene serine/threonine kinase 11 interacting protein
Tssr7551 1 75521757 to 75521801 44 + TSS region transcription start site region 7551
Tssr7552 1 75521806 to 75521821 15 + TSS region transcription start site region 7552
Tssr7553 1 75524988 to 75524999 11 + TSS region transcription start site region 7553
Gm15183 1 75542211 to 75542558 347 + pseudogene predicted gene 15183
Slc4a3 1 75545914 to 75559431 13517 + protein coding gene solute carrier family 4 (anion exchanger), member 3
Cpgi445 1 75546013 to 75546922 909 CpG island CpG island 445
Tssr7554 1 75546057 to 75546095 38 + TSS region transcription start site region 7554
Tssr7555 1 75546258 to 75546312 54 + TSS region transcription start site region 7555
Tssr7556 1 75546449 to 75546514 65 + TSS region transcription start site region 7556
Tssr7557 1 75546522 to 75546541 19 + TSS region transcription start site region 7557
Tssr7558 1 75546640 to 75546654 14 + TSS region transcription start site region 7558
Tssr7559 1 75549581 to 75549626 45 + TSS region transcription start site region 7559
Tssr7560 1 75549731 to 75549748 17 + TSS region transcription start site region 7560
Tssr12414 1 75549810 to 75549816 6 - TSS region transcription start site region 12414
Gm15180 1 75568083 to 75568574 491 + pseudogene predicted gene 15180
Lore1 1 75572547 to 93013355 17440808 QTL loss of righting induced by ethanol 1
D1Mit46 1 75572547 to 75572799 252 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 46
Alcw5 1 75572547 to 75572799 252 QTL alcohol withdrawal 5
Lxw5 1 75572547 to 75572799 252 QTL lupus BXSB x NZW 5
Tssr12415 1 75606503 to 75606530 27 - TSS region transcription start site region 12415
Gm15182 1 75624654 to 75626329 1675 + pseudogene predicted gene 15182
Gm5257 1 75636390 to 75637179 789 + pseudogene predicted gene 5257
Tssr126 1 75637037 to 75637038 1 + TSS region transcription start site region 126
Cpgi446 1 75654569 to 75654785 216 CpG island CpG island 446
D1Mit331 1 75833834 to 75833993 159 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 331
Tssr127 1 75885426 to 75885432 6 + TSS region transcription start site region 127
D1Mit284 1 75915229 to 75915317 88 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 284
Gm32622 1 75936719 to 76094342 157623 + lncRNA gene predicted gene, 32622
Gm29065 1 76016658 to 76018756 2098 - lincRNA gene predicted gene 29065
Gm32737 1 76094981 to 76106216 11235 + lncRNA gene predicted gene, 32737