Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:74944429-75474476

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197 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ihh 1 74945315 to 74951672 6357 - protein coding gene Indian hedgehog
Cpgi407 1 74947869 to 74948634 765 CpG island CpG island 407
Cpgi408 1 74949698 to 74952368 2670 CpG island CpG island 408
Tssr12332 1 74951438 to 74951450 12 - TSS region transcription start site region 12332
Tssr12333 1 74951662 to 74951678 16 - TSS region transcription start site region 12333
Skull1 1 74952818 to 74952921 103 QTL skull morphology 1
D1Mit7 1 74952818 to 74952921 103 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 7
Egrm1 1 74952818 to 74952921 103 QTL early growth rate, maternal effect 1
Skl1 1 74952818 to 74952921 103 QTL skeletal size (tail length) 1
Gm37744 1 74954252 to 74955841 1589 + unclassified gene predicted gene, 37744
Nhej1 1 74967346 to 75125226 157880 - protein coding gene nonhomologous end-joining factor 1
Tssr12334 1 74968282 to 74968296 14 - TSS region transcription start site region 12334
D1Mit252 1 75003622 to 75003770 148 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 252
D1Mit252.1 1 75003748 to 75003860 112 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 252.1
Tssr7482 1 75028654 to 75028659 5 + TSS region transcription start site region 7482
D1Mit23 1 75033692 to 75033823 131 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 23
Cpgi409 1 75124540 to 75125370 830 CpG island CpG island 409
Tssr12335 1 75124936 to 75124950 14 - TSS region transcription start site region 12335
Tssr12336 1 75125182 to 75125210 28 - TSS region transcription start site region 12336
Tssr12337 1 75125228 to 75125255 27 - TSS region transcription start site region 12337
Slc23a3 1 75125541 to 75133890 8349 - protein coding gene solute carrier family 23 (nucleobase transporters), member 3
Tssr7483 1 75128550 to 75128552 2 + TSS region transcription start site region 7483
Tssr12338 1 75128577 to 75128600 23 - TSS region transcription start site region 12338
Tssr12339 1 75128601 to 75128621 20 - TSS region transcription start site region 12339
Tssr12340 1 75128643 to 75128655 12 - TSS region transcription start site region 12340
Tssr12341 1 75133478 to 75133483 5 - TSS region transcription start site region 12341
Tssr12342 1 75133507 to 75133516 9 - TSS region transcription start site region 12342
Tssr12343 1 75133529 to 75133559 30 - TSS region transcription start site region 12343
Tssr12344 1 75133573 to 75133578 5 - TSS region transcription start site region 12344
Tssr12345 1 75133866 to 75133888 22 - TSS region transcription start site region 12345
Tssr12346 1 75133893 to 75133913 20 - TSS region transcription start site region 12346
Cnppd1 1 75135215 to 75142733 7518 - protein coding gene cyclin Pas1/PHO80 domain containing 1
Tssr12347 1 75136588 to 75136601 13 - TSS region transcription start site region 12347
Tssr12348 1 75137404 to 75137424 20 - TSS region transcription start site region 12348
Tssr12349 1 75139396 to 75139400 4 - TSS region transcription start site region 12349
Cpgi410 1 75141307 to 75142067 760 CpG island CpG island 410
Tssr12350 1 75141509 to 75141515 6 - TSS region transcription start site region 12350
Tssr12351 1 75141518 to 75141530 12 - TSS region transcription start site region 12351
Tssr12352 1 75141531 to 75141544 13 - TSS region transcription start site region 12352
Tssr12353 1 75141572 to 75141606 34 - TSS region transcription start site region 12353
Tssr12354 1 75141626 to 75141648 22 - TSS region transcription start site region 12354
Tssr7484 1 75141633 to 75141705 72 + TSS region transcription start site region 7484
Tssr12355 1 75141729 to 75141743 14 - TSS region transcription start site region 12355
Tssr7485 1 75141787 to 75141798 11 + TSS region transcription start site region 7485
Tssr12356 1 75141792 to 75141803 11 - TSS region transcription start site region 12356
Cpgi411 1 75142235 to 75143512 1277 CpG island CpG island 411
Tssr12357 1 75142324 to 75142354 30 - TSS region transcription start site region 12357
Tssr12358 1 75142360 to 75142424 64 - TSS region transcription start site region 12358
Tssr7486 1 75142433 to 75142483 50 + TSS region transcription start site region 7486
Tssr7487 1 75142502 to 75142519 17 + TSS region transcription start site region 7487
Tssr12359 1 75142634 to 75142725 91 - TSS region transcription start site region 12359
Tssr7488 1 75142718 to 75142742 24 + TSS region transcription start site region 7488
Tssr7489 1 75142762 to 75142773 11 + TSS region transcription start site region 7489
Tssr7490 1 75142775 to 75142797 22 + TSS region transcription start site region 7490
Retreg2 1 75142786 to 75147909 5123 + protein coding gene reticulophagy regulator family member 2
Tssr7491 1 75142813 to 75142824 11 + TSS region transcription start site region 7491
Tssr7492 1 75142828 to 75142837 9 + TSS region transcription start site region 7492
Tssr7493 1 75143243 to 75143271 28 + TSS region transcription start site region 7493
Tssr7494 1 75147298 to 75147318 20 + TSS region transcription start site region 7494
Cpgi412 1 75168459 to 75169327 868 CpG island CpG island 412
Tssr7495 1 75168631 to 75168656 25 + TSS region transcription start site region 7495
Zfand2b 1 75168646 to 75171626 2980 + protein coding gene zinc finger, AN1 type domain 2B
Tssr7496 1 75168660 to 75168683 23 + TSS region transcription start site region 7496
Tssr7497 1 75168746 to 75168772 26 + TSS region transcription start site region 7497
Abcb6 1 75171717 to 75180392 8675 - protein coding gene ATP-binding cassette, sub-family B (MDR/TAP), member 6
Gm29253 1 75171731 to 75185146 13415 - unclassified non-coding RNA gene predicted gene 29253
Cpgi413 1 75179697 to 75180570 873 CpG island CpG island 413
Tssr12360 1 75180226 to 75180309 83 - TSS region transcription start site region 12360
Tssr12361 1 75180349 to 75180407 58 - TSS region transcription start site region 12361
Atg9a 1 75180861 to 75192010 11149 - protein coding gene autophagy related 9A
Tssr12362 1 75190350 to 75190381 31 - TSS region transcription start site region 12362
Cpgi414 1 75191406 to 75192783 1377 CpG island CpG island 414
Tssr12363 1 75191682 to 75191735 53 - TSS region transcription start site region 12363
Tssr12364 1 75191934 to 75191997 63 - TSS region transcription start site region 12364
Tssr12365 1 75192004 to 75192016 12 - TSS region transcription start site region 12365
Tssr7498 1 75192143 to 75192230 87 + TSS region transcription start site region 7498
Ankzf1 1 75192160 to 75199387 7227 + protein coding gene ankyrin repeat and zinc finger domain containing 1
Tssr12366 1 75192631 to 75192682 51 - TSS region transcription start site region 12366
Glb1l 1 75198236 to 75210813 12577 - protein coding gene galactosidase, beta 1-like
Cpgi415 1 75209151 to 75209591 440 CpG island CpG island 415
Tssr12367 1 75209429 to 75209476 47 - TSS region transcription start site region 12367
Gm27943 1 75209613 to 75209728 115 - miRNA gene predicted gene, 27943
Cpgi416 1 75210685 to 75211335 650 CpG island CpG island 416
Tssr123 1 75210717 to 75210730 13 - TSS region transcription start site region 123
Tssr12368 1 75210732 to 75210807 75 - TSS region transcription start site region 12368
Tssr7499 1 75210832 to 75210910 78 + TSS region transcription start site region 7499
Stk16 1 75210838 to 75215606 4768 + protein coding gene serine/threonine kinase 16
Tuba4a 1 75214972 to 75219860 4888 - protein coding gene tubulin, alpha 4A
Tssr12369 1 75216438 to 75216450 12 - TSS region transcription start site region 12369
Tssr12370 1 75216516 to 75216546 30 - TSS region transcription start site region 12370
Tssr12371 1 75216949 to 75216971 22 - TSS region transcription start site region 12371
Tssr12372 1 75217294 to 75217304 10 - TSS region transcription start site region 12372
Tssr12373 1 75218483 to 75218494 11 - TSS region transcription start site region 12373
Cpgi417 1 75218497 to 75220225 1728 CpG island CpG island 417
Tssr12374 1 75219245 to 75219262 17 - TSS region transcription start site region 12374
Tssr12375 1 75219853 to 75219891 38 - TSS region transcription start site region 12375
Tssr12376 1 75219911 to 75219922 11 - TSS region transcription start site region 12376
A630095N17Rik 1 75220095 to 75232102 12007 - protein coding gene RIKEN cDNA A630095N17 gene
Cpgi418 1 75236176 to 75237113 937 CpG island CpG island 418
Tssr12377 1 75236261 to 75236283 22 - TSS region transcription start site region 12377
Tssr12378 1 75236325 to 75236348 23 - TSS region transcription start site region 12378
Tssr7500 1 75236400 to 75236429 29 + TSS region transcription start site region 7500
Dnajb2 1 75236406 to 75245692 9286 + protein coding gene DnaJ heat shock protein family (Hsp40) member B2
Tssr7501 1 75236439 to 75236469 30 + TSS region transcription start site region 7501
Tssr7502 1 75236471 to 75236492 21 + TSS region transcription start site region 7502
Tssr7503 1 75236498 to 75236521 23 + TSS region transcription start site region 7503
Tssr7504 1 75236527 to 75236548 21 + TSS region transcription start site region 7504
Tssr7505 1 75236577 to 75236588 11 + TSS region transcription start site region 7505
Tssr7506 1 75236616 to 75236627 11 + TSS region transcription start site region 7506
Tssr7507 1 75236659 to 75236665 6 + TSS region transcription start site region 7507
Tssr7508 1 75236753 to 75236761 8 + TSS region transcription start site region 7508
Tssr7509 1 75236765 to 75236803 38 + TSS region transcription start site region 7509
Tssr12379 1 75236863 to 75236882 19 - TSS region transcription start site region 12379
Tssr7510 1 75236964 to 75236972 8 + TSS region transcription start site region 7510
Tssr7511 1 75236973 to 75236991 18 + TSS region transcription start site region 7511
Ptprn 1 75247035 to 75264497 17462 - protein coding gene protein tyrosine phosphatase, receptor type, N
Tssr7512 1 75247189 to 75247197 8 + TSS region transcription start site region 7512
Cpgi419 1 75251616 to 75252029 413 CpG island CpG island 419
Gm28294 1 75252322 to 75257427 5105 + antisense lncRNA gene predicted gene 28294
Tssr12380 1 75255849 to 75255867 18 - TSS region transcription start site region 12380
Tssr12381 1 75256823 to 75256847 24 - TSS region transcription start site region 12381
Cpgi420 1 75263495 to 75264296 801 CpG island CpG island 420
Tssr12382 1 75264134 to 75264194 60 - TSS region transcription start site region 12382
Tssr12383 1 75264195 to 75264219 24 - TSS region transcription start site region 12383
Tssr12384 1 75264239 to 75264240 1 - TSS region transcription start site region 12384
Tssr12385 1 75264266 to 75264275 9 - TSS region transcription start site region 12385
Tssr12386 1 75264279 to 75264288 9 - TSS region transcription start site region 12386
Tssr12387 1 75264676 to 75264693 17 - TSS region transcription start site region 12387
Resp18 1 75272199 to 75278415 6216 - protein coding gene regulated endocrine-specific protein 18
Gm28902 1 75272605 to 75275652 3047 + antisense lncRNA gene predicted gene 28902
Cpgi421 1 75278191 to 75278364 173 CpG island CpG island 421
Tssr12388 1 75278345 to 75278440 95 - TSS region transcription start site region 12388
Tssr12389 1 75278441 to 75278455 14 - TSS region transcription start site region 12389
D1Mcg7 1 75305074 to 75305285 211 DNA segment DNA segment, Chr 1, McGill University 7
Dnpep 1 75308565 to 75317654 9089 - protein coding gene aspartyl aminopeptidase
Cpgi422 1 75316504 to 75318193 1689 CpG island CpG island 422
Tssr12390 1 75316914 to 75316937 23 - TSS region transcription start site region 12390
Tssr12391 1 75316946 to 75316982 36 - TSS region transcription start site region 12391
Tssr12392 1 75316998 to 75317025 27 - TSS region transcription start site region 12392
Tssr12393 1 75317163 to 75317177 14 - TSS region transcription start site region 12393
Tssr12394 1 75317299 to 75317342 43 - TSS region transcription start site region 12394
Tssr12395 1 75317360 to 75317491 131 - TSS region transcription start site region 12395
Tssr12396 1 75317536 to 75317545 9 - TSS region transcription start site region 12396
Tssr12397 1 75317590 to 75317612 22 - TSS region transcription start site region 12397
D1Mit61 1 75338203 to 75338349 146 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 61
Cpgi423 1 75360175 to 75361340 1165 CpG island CpG island 423
Tssr7513 1 75360222 to 75360249 27 + TSS region transcription start site region 7513
Tssr7514 1 75360321 to 75360338 17 + TSS region transcription start site region 7514
Des 1 75360329 to 75368579 8250 + protein coding gene desmin
Tssr7515 1 75360342 to 75360353 11 + TSS region transcription start site region 7515
Tssr7516 1 75362015 to 75362044 29 + TSS region transcription start site region 7516
Tssr7517 1 75362049 to 75362064 15 + TSS region transcription start site region 7517
Tssr12398 1 75362182 to 75362223 41 - TSS region transcription start site region 12398
Tssr12399 1 75366811 to 75366847 36 - TSS region transcription start site region 12399
Tssr7518 1 75367127 to 75367166 39 + TSS region transcription start site region 7518
Tssr7519 1 75367642 to 75367689 47 + TSS region transcription start site region 7519
Gm15179 1 75368212 to 75375012 6800 - antisense lncRNA gene predicted gene 15179
Cpgi424 1 75369517 to 75369887 370 CpG island CpG island 424
Tssr12400 1 75370448 to 75370485 37 - TSS region transcription start site region 12400
Tssr12401 1 75375002 to 75375031 29 - TSS region transcription start site region 12401
Cpgi425 1 75375224 to 75375917 693 CpG island CpG island 425
Tssr7520 1 75375271 to 75375325 54 + TSS region transcription start site region 7520
Speg 1 75375297 to 75432320 57023 + protein coding gene SPEG complex locus
Tssr7521 1 75375328 to 75375339 11 + TSS region transcription start site region 7521
Cpgi426 1 75381618 to 75382707 1089 CpG island CpG island 426
Tssr7522 1 75381631 to 75381650 19 + TSS region transcription start site region 7522
Tssr7523 1 75381651 to 75381663 12 + TSS region transcription start site region 7523
Tssr7524 1 75382119 to 75382149 30 + TSS region transcription start site region 7524
Tssr7525 1 75383585 to 75383588 3 + TSS region transcription start site region 7525
Tssr7526 1 75384669 to 75384682 13 + TSS region transcription start site region 7526
Cpgi427 1 75384673 to 75385402 729 CpG island CpG island 427
Tssr7527 1 75385544 to 75385601 57 + TSS region transcription start site region 7527
Cpgi428 1 75387605 to 75389255 1650 CpG island CpG island 428
Gm15178 1 75392131 to 75396363 4232 - antisense lncRNA gene predicted gene 15178
Tssr7528 1 75400070 to 75400163 93 + TSS region transcription start site region 7528
Tssr7529 1 75400174 to 75400185 11 + TSS region transcription start site region 7529
Tssr124 1 75400972 to 75401020 48 + TSS region transcription start site region 124
Cpgi429 1 75421895 to 75423628 1733 CpG island CpG island 429
Cpgi430 1 75435808 to 75436253 445 CpG island CpG island 430
Gmppa 1 75435930 to 75443179 7249 + protein coding gene GDP-mannose pyrophosphorylase A
Tssr7530 1 75435937 to 75435992 55 + TSS region transcription start site region 7530
Tssr7531 1 75436002 to 75436013 11 + TSS region transcription start site region 7531
Tssr7532 1 75439227 to 75439238 11 + TSS region transcription start site region 7532
Tssr7533 1 75441006 to 75441028 22 + TSS region transcription start site region 7533
Tssr7534 1 75442372 to 75442389 17 + TSS region transcription start site region 7534
Cpgi431 1 75445846 to 75446044 198 CpG island CpG island 431
Cpgi432 1 75449082 to 75449358 276 CpG island CpG island 432
Tssr125 1 75449723 to 75449724 1 + TSS region transcription start site region 125
Cpgi433 1 75450225 to 75450826 601 CpG island CpG island 433
Tssr7535 1 75450500 to 75450516 16 + TSS region transcription start site region 7535
Asic4 1 75450510 to 75474340 23830 + protein coding gene acid-sensing (proton-gated) ion channel family member 4
Tssr7536 1 75450582 to 75450614 32 + TSS region transcription start site region 7536
Tssr7537 1 75450713 to 75450731 18 + TSS region transcription start site region 7537
Gm32506 1 75455521 to 75459955 4434 - lncRNA gene predicted gene, 32506
Cpgi434 1 75458356 to 75458876 520 CpG island CpG island 434
Gm37264 1 75468570 to 75470761 2191 - unclassified gene predicted gene, 37264
Jckm2 1 133363199 to 74952818 -58410381 QTL juvenile cystic kidney modifier 2