Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:74852071-74985599

41 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Gm16582	1	74850895 to 74879953	29058	+	lncRNA gene	predicted gene 16582
Cpgi400	1	74854460 to 74856610	2150		CpG island	CpG island 400
Tssr7473	1	74854910 to 74854945	35	+	TSS region	transcription start site region 7473
Tssr7474	1	74854954 to 74854965	11	+	TSS region	transcription start site region 7474
Cdk5r2	1	74855029 to 74857732	2703	+	protein coding gene	cyclin-dependent kinase 5, regulatory subunit 2 (p39)
Tssr7475	1	74855203 to 74855216	13	+	TSS region	transcription start site region 7475
Tssr7476	1	74856345 to 74856365	20	+	TSS region	transcription start site region 7476
Tssr7477	1	74856542 to 74856552	10	+	TSS region	transcription start site region 7477
Tssr7478	1	74856623 to 74856626	3	+	TSS region	transcription start site region 7478
Tssr7479	1	74856628 to 74856651	23	+	TSS region	transcription start site region 7479
Cpgi401	1	74857252 to 74857443	191		CpG island	CpG island 401
Cpgi402	1	74858088 to 74859113	1025		CpG island	CpG island 402
Fev	1	74881509 to 74885419	3910	-	protein coding gene	FEV (ETS oncogene family)
Cpgi403	1	74881743 to 74883225	1482		CpG island	CpG island 403
Cpgi404	1	74884370 to 74886013	1643		CpG island	CpG island 404
Tssr7480	1	74884730 to 74884739	9	+	TSS region	transcription start site region 7480
Tssr7481	1	74885772 to 74885775	3	+	TSS region	transcription start site region 7481
Cryba2	1	74889934 to 74893143	3209	-	protein coding gene	crystallin, beta A2
Cpgi405	1	74892664 to 74893699	1035		CpG island	CpG island 405
Tssr12327	1	74892813 to 74892826	13	-	TSS region	transcription start site region 12327
Tssr12328	1	74893109 to 74893123	14	-	TSS region	transcription start site region 12328
Cpgi406	1	74900381 to 74901220	839		CpG island	CpG island 406
Mir375	1	74900658 to 74900721	63	-	miRNA gene	microRNA 375
Tssr12329	1	74900976 to 74900979	3	-	TSS region	transcription start site region 12329
Cfap65	1	74902071 to 74935599	33528	-	protein coding gene	cilia and flagella associated protein 65
Gm15841	1	74902371 to 74907653	5282	+	antisense lncRNA gene	predicted gene 15841
Tssr12330	1	74913045 to 74913049	4	-	TSS region	transcription start site region 12330
Tssr12331	1	74935549 to 74935613	64	-	TSS region	transcription start site region 12331
Ihh	1	74945315 to 74951672	6357	-	protein coding gene	Indian hedgehog
Cpgi407	1	74947869 to 74948634	765		CpG island	CpG island 407
Cpgi408	1	74949698 to 74952368	2670		CpG island	CpG island 408
Tssr12332	1	74951438 to 74951450	12	-	TSS region	transcription start site region 12332
Tssr12333	1	74951662 to 74951678	16	-	TSS region	transcription start site region 12333
Egrm1	1	74952818 to 74952921	103		QTL	early growth rate, maternal effect 1
Skull1	1	74952818 to 74952921	103		QTL	skull morphology 1
D1Mit7	1	74952818 to 74952921	103		DNA segment	DNA segment, Chr 1, Massachusetts Institute of Technology 7
Skl1	1	74952818 to 74952921	103		QTL	skeletal size (tail length) 1
Gm37744	1	74954252 to 74955841	1589	+	unclassified gene	predicted gene, 37744
Nhej1	1	74967346 to 75125226	157880	-	protein coding gene	nonhomologous end-joining factor 1
Tssr12334	1	74968282 to 74968296	14	-	TSS region	transcription start site region 12334
Jckm2	1	133363199 to 74952818	-58410381		QTL	juvenile cystic kidney modifier 2