Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:74745541-75513890

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301 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prkag3 1 74738922 to 74749221 10299 - protein coding gene protein kinase, AMP-activated, gamma 3 non-catalytic subunit
Tssr12323 1 74747354 to 74747363 9 - TSS region transcription start site region 12323
Cpgi390 1 74748601 to 74749076 475 CpG island CpG island 390
Tssr12324 1 74748854 to 74748887 33 - TSS region transcription start site region 12324
Tssr12325 1 74749440 to 74749453 13 - TSS region transcription start site region 12325
Gm27507 1 74764798 to 74764890 92 + unclassified non-coding RNA gene predicted gene, 27507
Cpgi391 1 74771110 to 74772636 1526 CpG island CpG island 391
Tssr7458 1 74771725 to 74771751 26 + TSS region transcription start site region 7458
Tssr7459 1 74771762 to 74771791 29 + TSS region transcription start site region 7459
Tssr7460 1 74771886 to 74771911 25 + TSS region transcription start site region 7460
Wnt6 1 74771892 to 74785322 13430 + protein coding gene wingless-type MMTV integration site family, member 6
Tssr7461 1 74771914 to 74771932 18 + TSS region transcription start site region 7461
Tssr7462 1 74772012 to 74772019 7 + TSS region transcription start site region 7462
Gm29539 1 74774943 to 74777405 2462 - antisense lncRNA gene predicted gene 29539
Tssr7463 1 74779414 to 74779436 22 + TSS region transcription start site region 7463
Cpgi392 1 74782182 to 74783142 960 CpG island CpG island 392
Cpgi393 1 74783725 to 74784822 1097 CpG island CpG island 393
Gm32099 1 74787169 to 74795333 8164 - lncRNA gene predicted gene, 32099
Cpgi394 1 74791242 to 74792366 1124 CpG island CpG island 394
Tssr7464 1 74791750 to 74791768 18 + TSS region transcription start site region 7464
Tssr7465 1 74791806 to 74791818 12 + TSS region transcription start site region 7465
Wnt10a 1 74792019 to 74804176 12157 + protein coding gene wingless-type MMTV integration site family, member 10A
Tssr7466 1 74792023 to 74792076 53 + TSS region transcription start site region 7466
Tssr7467 1 74792137 to 74792157 20 + TSS region transcription start site region 7467
Cpgi395 1 74794172 to 74795228 1056 CpG island CpG island 395
Tssr7468 1 74794637 to 74794650 13 + TSS region transcription start site region 7468
Tssr7469 1 74794713 to 74794716 3 + TSS region transcription start site region 7469
Cpgi396 1 74800426 to 74801006 580 CpG island CpG island 396
Cpgi397 1 74802993 to 74803936 943 CpG island CpG island 397
Cpgi398 1 74807017 to 74807293 276 CpG island CpG island 398
n-TGgcc3 1 74816747 to 74816817 70 - tRNA gene nuclear encoded tRNA glycine 3 (anticodon GCC)
Cpgi399 1 74816832 to 74817315 483 CpG island CpG island 399
Tssr7470 1 74817000 to 74817039 39 + TSS region transcription start site region 7470
Tssr7471 1 74817041 to 74817064 23 + TSS region transcription start site region 7471
Tssr7472 1 74817065 to 74817076 11 + TSS region transcription start site region 7472
Gm32275 1 74820813 to 74843532 22719 - lncRNA gene predicted gene, 32275
Gm16582 1 74850895 to 74879953 29058 + lncRNA gene predicted gene 16582
Tssr12326 1 74851106 to 74851114 8 - TSS region transcription start site region 12326
Cpgi400 1 74854460 to 74856610 2150 CpG island CpG island 400
Tssr7473 1 74854910 to 74854945 35 + TSS region transcription start site region 7473
Tssr7474 1 74854954 to 74854965 11 + TSS region transcription start site region 7474
Cdk5r2 1 74855029 to 74857732 2703 + protein coding gene cyclin-dependent kinase 5, regulatory subunit 2 (p39)
Tssr7475 1 74855203 to 74855216 13 + TSS region transcription start site region 7475
Tssr7476 1 74856345 to 74856365 20 + TSS region transcription start site region 7476
Tssr7477 1 74856542 to 74856552 10 + TSS region transcription start site region 7477
Tssr7478 1 74856623 to 74856626 3 + TSS region transcription start site region 7478
Tssr7479 1 74856628 to 74856651 23 + TSS region transcription start site region 7479
Cpgi401 1 74857252 to 74857443 191 CpG island CpG island 401
Cpgi402 1 74858088 to 74859113 1025 CpG island CpG island 402
Fev 1 74881509 to 74885419 3910 - protein coding gene FEV (ETS oncogene family)
Cpgi403 1 74881743 to 74883225 1482 CpG island CpG island 403
Cpgi404 1 74884370 to 74886013 1643 CpG island CpG island 404
Tssr7480 1 74884730 to 74884739 9 + TSS region transcription start site region 7480
Tssr7481 1 74885772 to 74885775 3 + TSS region transcription start site region 7481
Cryba2 1 74889934 to 74893143 3209 - protein coding gene crystallin, beta A2
Cpgi405 1 74892664 to 74893699 1035 CpG island CpG island 405
Tssr12327 1 74892813 to 74892826 13 - TSS region transcription start site region 12327
Tssr12328 1 74893109 to 74893123 14 - TSS region transcription start site region 12328
Cpgi406 1 74900381 to 74901220 839 CpG island CpG island 406
Mir375 1 74900658 to 74900721 63 - miRNA gene microRNA 375
Tssr12329 1 74900976 to 74900979 3 - TSS region transcription start site region 12329
Cfap65 1 74902071 to 74935599 33528 - protein coding gene cilia and flagella associated protein 65
Gm15841 1 74902371 to 74907653 5282 + antisense lncRNA gene predicted gene 15841
Tssr12330 1 74913045 to 74913049 4 - TSS region transcription start site region 12330
Tssr12331 1 74935549 to 74935613 64 - TSS region transcription start site region 12331
Ihh 1 74945315 to 74951672 6357 - protein coding gene Indian hedgehog
Cpgi407 1 74947869 to 74948634 765 CpG island CpG island 407
Cpgi408 1 74949698 to 74952368 2670 CpG island CpG island 408
Tssr12332 1 74951438 to 74951450 12 - TSS region transcription start site region 12332
Tssr12333 1 74951662 to 74951678 16 - TSS region transcription start site region 12333
Egrm1 1 74952818 to 74952921 103 QTL early growth rate, maternal effect 1
D1Mit7 1 74952818 to 74952921 103 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 7
Skull1 1 74952818 to 74952921 103 QTL skull morphology 1
Skl1 1 74952818 to 74952921 103 QTL skeletal size (tail length) 1
Gm37744 1 74954252 to 74955841 1589 + unclassified gene predicted gene, 37744
Nhej1 1 74967346 to 75125226 157880 - protein coding gene nonhomologous end-joining factor 1
Tssr12334 1 74968282 to 74968296 14 - TSS region transcription start site region 12334
D1Mit252 1 75003622 to 75003770 148 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 252
D1Mit252.1 1 75003748 to 75003860 112 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 252.1
Tssr7482 1 75028654 to 75028659 5 + TSS region transcription start site region 7482
D1Mit23 1 75033692 to 75033823 131 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 23
Cpgi409 1 75124540 to 75125370 830 CpG island CpG island 409
Tssr12335 1 75124936 to 75124950 14 - TSS region transcription start site region 12335
Tssr12336 1 75125182 to 75125210 28 - TSS region transcription start site region 12336
Tssr12337 1 75125228 to 75125255 27 - TSS region transcription start site region 12337
Slc23a3 1 75125541 to 75133890 8349 - protein coding gene solute carrier family 23 (nucleobase transporters), member 3
Tssr7483 1 75128550 to 75128552 2 + TSS region transcription start site region 7483
Tssr12338 1 75128577 to 75128600 23 - TSS region transcription start site region 12338
Tssr12339 1 75128601 to 75128621 20 - TSS region transcription start site region 12339
Tssr12340 1 75128643 to 75128655 12 - TSS region transcription start site region 12340
Tssr12341 1 75133478 to 75133483 5 - TSS region transcription start site region 12341
Tssr12342 1 75133507 to 75133516 9 - TSS region transcription start site region 12342
Tssr12343 1 75133529 to 75133559 30 - TSS region transcription start site region 12343
Tssr12344 1 75133573 to 75133578 5 - TSS region transcription start site region 12344
Tssr12345 1 75133866 to 75133888 22 - TSS region transcription start site region 12345
Tssr12346 1 75133893 to 75133913 20 - TSS region transcription start site region 12346
Cnppd1 1 75135215 to 75142733 7518 - protein coding gene cyclin Pas1/PHO80 domain containing 1
Tssr12347 1 75136588 to 75136601 13 - TSS region transcription start site region 12347
Tssr12348 1 75137404 to 75137424 20 - TSS region transcription start site region 12348
Tssr12349 1 75139396 to 75139400 4 - TSS region transcription start site region 12349
Cpgi410 1 75141307 to 75142067 760 CpG island CpG island 410
Tssr12350 1 75141509 to 75141515 6 - TSS region transcription start site region 12350
Tssr12351 1 75141518 to 75141530 12 - TSS region transcription start site region 12351
Tssr12352 1 75141531 to 75141544 13 - TSS region transcription start site region 12352
Tssr12353 1 75141572 to 75141606 34 - TSS region transcription start site region 12353
Tssr12354 1 75141626 to 75141648 22 - TSS region transcription start site region 12354
Tssr7484 1 75141633 to 75141705 72 + TSS region transcription start site region 7484
Tssr12355 1 75141729 to 75141743 14 - TSS region transcription start site region 12355
Tssr7485 1 75141787 to 75141798 11 + TSS region transcription start site region 7485
Tssr12356 1 75141792 to 75141803 11 - TSS region transcription start site region 12356
Cpgi411 1 75142235 to 75143512 1277 CpG island CpG island 411
Tssr12357 1 75142324 to 75142354 30 - TSS region transcription start site region 12357
Tssr12358 1 75142360 to 75142424 64 - TSS region transcription start site region 12358
Tssr7486 1 75142433 to 75142483 50 + TSS region transcription start site region 7486
Tssr7487 1 75142502 to 75142519 17 + TSS region transcription start site region 7487
Tssr12359 1 75142634 to 75142725 91 - TSS region transcription start site region 12359
Tssr7488 1 75142718 to 75142742 24 + TSS region transcription start site region 7488
Tssr7489 1 75142762 to 75142773 11 + TSS region transcription start site region 7489
Tssr7490 1 75142775 to 75142797 22 + TSS region transcription start site region 7490
Retreg2 1 75142786 to 75147909 5123 + protein coding gene reticulophagy regulator family member 2
Tssr7491 1 75142813 to 75142824 11 + TSS region transcription start site region 7491
Tssr7492 1 75142828 to 75142837 9 + TSS region transcription start site region 7492
Tssr7493 1 75143243 to 75143271 28 + TSS region transcription start site region 7493
Tssr7494 1 75147298 to 75147318 20 + TSS region transcription start site region 7494
Cpgi412 1 75168459 to 75169327 868 CpG island CpG island 412
Tssr7495 1 75168631 to 75168656 25 + TSS region transcription start site region 7495
Zfand2b 1 75168646 to 75171626 2980 + protein coding gene zinc finger, AN1 type domain 2B
Tssr7496 1 75168660 to 75168683 23 + TSS region transcription start site region 7496
Tssr7497 1 75168746 to 75168772 26 + TSS region transcription start site region 7497
Abcb6 1 75171717 to 75180392 8675 - protein coding gene ATP-binding cassette, sub-family B (MDR/TAP), member 6
Gm29253 1 75171731 to 75185146 13415 - unclassified non-coding RNA gene predicted gene 29253
Cpgi413 1 75179697 to 75180570 873 CpG island CpG island 413
Tssr12360 1 75180226 to 75180309 83 - TSS region transcription start site region 12360
Tssr12361 1 75180349 to 75180407 58 - TSS region transcription start site region 12361
Atg9a 1 75180861 to 75192010 11149 - protein coding gene autophagy related 9A
Tssr12362 1 75190350 to 75190381 31 - TSS region transcription start site region 12362
Cpgi414 1 75191406 to 75192783 1377 CpG island CpG island 414
Tssr12363 1 75191682 to 75191735 53 - TSS region transcription start site region 12363
Tssr12364 1 75191934 to 75191997 63 - TSS region transcription start site region 12364
Tssr12365 1 75192004 to 75192016 12 - TSS region transcription start site region 12365
Tssr7498 1 75192143 to 75192230 87 + TSS region transcription start site region 7498
Ankzf1 1 75192160 to 75199387 7227 + protein coding gene ankyrin repeat and zinc finger domain containing 1
Tssr12366 1 75192631 to 75192682 51 - TSS region transcription start site region 12366
Glb1l 1 75198236 to 75210813 12577 - protein coding gene galactosidase, beta 1-like
Cpgi415 1 75209151 to 75209591 440 CpG island CpG island 415
Tssr12367 1 75209429 to 75209476 47 - TSS region transcription start site region 12367
Gm27943 1 75209613 to 75209728 115 - miRNA gene predicted gene, 27943
Cpgi416 1 75210685 to 75211335 650 CpG island CpG island 416
Tssr123 1 75210717 to 75210730 13 - TSS region transcription start site region 123
Tssr12368 1 75210732 to 75210807 75 - TSS region transcription start site region 12368
Tssr7499 1 75210832 to 75210910 78 + TSS region transcription start site region 7499
Stk16 1 75210838 to 75215606 4768 + protein coding gene serine/threonine kinase 16
Tuba4a 1 75214972 to 75219860 4888 - protein coding gene tubulin, alpha 4A
Tssr12369 1 75216438 to 75216450 12 - TSS region transcription start site region 12369
Tssr12370 1 75216516 to 75216546 30 - TSS region transcription start site region 12370
Tssr12371 1 75216949 to 75216971 22 - TSS region transcription start site region 12371
Tssr12372 1 75217294 to 75217304 10 - TSS region transcription start site region 12372
Tssr12373 1 75218483 to 75218494 11 - TSS region transcription start site region 12373
Cpgi417 1 75218497 to 75220225 1728 CpG island CpG island 417
Tssr12374 1 75219245 to 75219262 17 - TSS region transcription start site region 12374
Tssr12375 1 75219853 to 75219891 38 - TSS region transcription start site region 12375
Tssr12376 1 75219911 to 75219922 11 - TSS region transcription start site region 12376
A630095N17Rik 1 75220095 to 75232102 12007 - protein coding gene RIKEN cDNA A630095N17 gene
Cpgi418 1 75236176 to 75237113 937 CpG island CpG island 418
Tssr12377 1 75236261 to 75236283 22 - TSS region transcription start site region 12377
Tssr12378 1 75236325 to 75236348 23 - TSS region transcription start site region 12378
Tssr7500 1 75236400 to 75236429 29 + TSS region transcription start site region 7500
Dnajb2 1 75236406 to 75245692 9286 + protein coding gene DnaJ heat shock protein family (Hsp40) member B2
Tssr7501 1 75236439 to 75236469 30 + TSS region transcription start site region 7501
Tssr7502 1 75236471 to 75236492 21 + TSS region transcription start site region 7502
Tssr7503 1 75236498 to 75236521 23 + TSS region transcription start site region 7503
Tssr7504 1 75236527 to 75236548 21 + TSS region transcription start site region 7504
Tssr7505 1 75236577 to 75236588 11 + TSS region transcription start site region 7505
Tssr7506 1 75236616 to 75236627 11 + TSS region transcription start site region 7506
Tssr7507 1 75236659 to 75236665 6 + TSS region transcription start site region 7507
Tssr7508 1 75236753 to 75236761 8 + TSS region transcription start site region 7508
Tssr7509 1 75236765 to 75236803 38 + TSS region transcription start site region 7509
Tssr12379 1 75236863 to 75236882 19 - TSS region transcription start site region 12379
Tssr7510 1 75236964 to 75236972 8 + TSS region transcription start site region 7510
Tssr7511 1 75236973 to 75236991 18 + TSS region transcription start site region 7511
Ptprn 1 75247035 to 75264497 17462 - protein coding gene protein tyrosine phosphatase, receptor type, N
Tssr7512 1 75247189 to 75247197 8 + TSS region transcription start site region 7512
Cpgi419 1 75251616 to 75252029 413 CpG island CpG island 419
Gm28294 1 75252322 to 75257427 5105 + antisense lncRNA gene predicted gene 28294
Tssr12380 1 75255849 to 75255867 18 - TSS region transcription start site region 12380
Tssr12381 1 75256823 to 75256847 24 - TSS region transcription start site region 12381
Cpgi420 1 75263495 to 75264296 801 CpG island CpG island 420
Tssr12382 1 75264134 to 75264194 60 - TSS region transcription start site region 12382
Tssr12383 1 75264195 to 75264219 24 - TSS region transcription start site region 12383
Tssr12384 1 75264239 to 75264240 1 - TSS region transcription start site region 12384
Tssr12385 1 75264266 to 75264275 9 - TSS region transcription start site region 12385
Tssr12386 1 75264279 to 75264288 9 - TSS region transcription start site region 12386
Tssr12387 1 75264676 to 75264693 17 - TSS region transcription start site region 12387
Resp18 1 75272199 to 75278415 6216 - protein coding gene regulated endocrine-specific protein 18
Gm28902 1 75272605 to 75275652 3047 + antisense lncRNA gene predicted gene 28902
Cpgi421 1 75278191 to 75278364 173 CpG island CpG island 421
Tssr12388 1 75278345 to 75278440 95 - TSS region transcription start site region 12388
Tssr12389 1 75278441 to 75278455 14 - TSS region transcription start site region 12389
D1Mcg7 1 75305074 to 75305285 211 DNA segment DNA segment, Chr 1, McGill University 7
Dnpep 1 75308565 to 75317654 9089 - protein coding gene aspartyl aminopeptidase