Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:74721509-75045419

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cyp27a1 1 74713574 to 74737892 24318 + protein coding gene cytochrome P450, family 27, subfamily a, polypeptide 1
Tssr7457 1 74732025 to 74732042 17 + TSS region transcription start site region 7457
Prkag3 1 74738922 to 74749221 10299 - protein coding gene protein kinase, AMP-activated, gamma 3 non-catalytic subunit
Tssr12323 1 74747354 to 74747363 9 - TSS region transcription start site region 12323
Cpgi390 1 74748601 to 74749076 475 CpG island CpG island 390
Tssr12324 1 74748854 to 74748887 33 - TSS region transcription start site region 12324
Tssr12325 1 74749440 to 74749453 13 - TSS region transcription start site region 12325
Gm27507 1 74764798 to 74764890 92 + unclassified non-coding RNA gene predicted gene, 27507
Cpgi391 1 74771110 to 74772636 1526 CpG island CpG island 391
Tssr7458 1 74771725 to 74771751 26 + TSS region transcription start site region 7458
Tssr7459 1 74771762 to 74771791 29 + TSS region transcription start site region 7459
Tssr7460 1 74771886 to 74771911 25 + TSS region transcription start site region 7460
Wnt6 1 74771892 to 74785322 13430 + protein coding gene wingless-type MMTV integration site family, member 6
Tssr7461 1 74771914 to 74771932 18 + TSS region transcription start site region 7461
Tssr7462 1 74772012 to 74772019 7 + TSS region transcription start site region 7462
Gm29539 1 74774943 to 74777405 2462 - antisense lncRNA gene predicted gene 29539
Tssr7463 1 74779414 to 74779436 22 + TSS region transcription start site region 7463
Cpgi392 1 74782182 to 74783142 960 CpG island CpG island 392
Cpgi393 1 74783725 to 74784822 1097 CpG island CpG island 393
Gm32099 1 74787169 to 74795333 8164 - lncRNA gene predicted gene, 32099
Cpgi394 1 74791242 to 74792366 1124 CpG island CpG island 394
Tssr7464 1 74791750 to 74791768 18 + TSS region transcription start site region 7464
Tssr7465 1 74791806 to 74791818 12 + TSS region transcription start site region 7465
Wnt10a 1 74792019 to 74804176 12157 + protein coding gene wingless-type MMTV integration site family, member 10A
Tssr7466 1 74792023 to 74792076 53 + TSS region transcription start site region 7466
Tssr7467 1 74792137 to 74792157 20 + TSS region transcription start site region 7467
Cpgi395 1 74794172 to 74795228 1056 CpG island CpG island 395
Tssr7468 1 74794637 to 74794650 13 + TSS region transcription start site region 7468
Tssr7469 1 74794713 to 74794716 3 + TSS region transcription start site region 7469
Cpgi396 1 74800426 to 74801006 580 CpG island CpG island 396
Cpgi397 1 74802993 to 74803936 943 CpG island CpG island 397
Cpgi398 1 74807017 to 74807293 276 CpG island CpG island 398
n-TGgcc3 1 74816747 to 74816817 70 - tRNA gene nuclear encoded tRNA glycine 3 (anticodon GCC)
Cpgi399 1 74816832 to 74817315 483 CpG island CpG island 399
Tssr7470 1 74817000 to 74817039 39 + TSS region transcription start site region 7470
Tssr7471 1 74817041 to 74817064 23 + TSS region transcription start site region 7471
Tssr7472 1 74817065 to 74817076 11 + TSS region transcription start site region 7472
Gm32275 1 74820813 to 74843532 22719 - lncRNA gene predicted gene, 32275
Gm16582 1 74850895 to 74879953 29058 + lncRNA gene predicted gene 16582
Tssr12326 1 74851106 to 74851114 8 - TSS region transcription start site region 12326
Cpgi400 1 74854460 to 74856610 2150 CpG island CpG island 400
Tssr7473 1 74854910 to 74854945 35 + TSS region transcription start site region 7473
Tssr7474 1 74854954 to 74854965 11 + TSS region transcription start site region 7474
Cdk5r2 1 74855029 to 74857732 2703 + protein coding gene cyclin-dependent kinase 5, regulatory subunit 2 (p39)
Tssr7475 1 74855203 to 74855216 13 + TSS region transcription start site region 7475
Tssr7476 1 74856345 to 74856365 20 + TSS region transcription start site region 7476
Tssr7477 1 74856542 to 74856552 10 + TSS region transcription start site region 7477
Tssr7478 1 74856623 to 74856626 3 + TSS region transcription start site region 7478
Tssr7479 1 74856628 to 74856651 23 + TSS region transcription start site region 7479
Cpgi401 1 74857252 to 74857443 191 CpG island CpG island 401
Cpgi402 1 74858088 to 74859113 1025 CpG island CpG island 402
Fev 1 74881509 to 74885419 3910 - protein coding gene FEV (ETS oncogene family)
Cpgi403 1 74881743 to 74883225 1482 CpG island CpG island 403
Cpgi404 1 74884370 to 74886013 1643 CpG island CpG island 404
Tssr7480 1 74884730 to 74884739 9 + TSS region transcription start site region 7480
Tssr7481 1 74885772 to 74885775 3 + TSS region transcription start site region 7481
Cryba2 1 74889934 to 74893143 3209 - protein coding gene crystallin, beta A2
Cpgi405 1 74892664 to 74893699 1035 CpG island CpG island 405
Tssr12327 1 74892813 to 74892826 13 - TSS region transcription start site region 12327
Tssr12328 1 74893109 to 74893123 14 - TSS region transcription start site region 12328
Cpgi406 1 74900381 to 74901220 839 CpG island CpG island 406
Mir375 1 74900658 to 74900721 63 - miRNA gene microRNA 375
Tssr12329 1 74900976 to 74900979 3 - TSS region transcription start site region 12329
Cfap65 1 74902071 to 74935599 33528 - protein coding gene cilia and flagella associated protein 65
Gm15841 1 74902371 to 74907653 5282 + antisense lncRNA gene predicted gene 15841
Tssr12330 1 74913045 to 74913049 4 - TSS region transcription start site region 12330
Tssr12331 1 74935549 to 74935613 64 - TSS region transcription start site region 12331
Ihh 1 74945315 to 74951672 6357 - protein coding gene Indian hedgehog
Cpgi407 1 74947869 to 74948634 765 CpG island CpG island 407
Cpgi408 1 74949698 to 74952368 2670 CpG island CpG island 408
Tssr12332 1 74951438 to 74951450 12 - TSS region transcription start site region 12332
Tssr12333 1 74951662 to 74951678 16 - TSS region transcription start site region 12333
Egrm1 1 74952818 to 74952921 103 QTL early growth rate, maternal effect 1
Skl1 1 74952818 to 74952921 103 QTL skeletal size (tail length) 1
D1Mit7 1 74952818 to 74952921 103 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 7
Skull1 1 74952818 to 74952921 103 QTL skull morphology 1
Gm37744 1 74954252 to 74955841 1589 + unclassified gene predicted gene, 37744
Nhej1 1 74967346 to 75125226 157880 - protein coding gene nonhomologous end-joining factor 1
Tssr12334 1 74968282 to 74968296 14 - TSS region transcription start site region 12334
D1Mit252 1 75003622 to 75003770 148 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 252
D1Mit252.1 1 75003748 to 75003860 112 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 252.1
Tssr7482 1 75028654 to 75028659 5 + TSS region transcription start site region 7482
D1Mit23 1 75033692 to 75033823 131 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 23
Jckm2 1 133363199 to 74952818 -58410381 QTL juvenile cystic kidney modifier 2