Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:74393525-75033940

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174 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lrnx11 1 39093727 to 74477206 35383479 QTL learning-contextual 11
Ctdsp1 1 74391609 to 74397285 5676 + protein coding gene CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1
Cpgi381 1 74393821 to 74394058 237 CpG island CpG island 381
Tssr12306 1 74393854 to 74393881 27 - TSS region transcription start site region 12306
Tssr164676 1 74393893 to 74393900 7 - TSS region transcription start site region 164676
Tssr12307 1 74394044 to 74394084 40 - TSS region transcription start site region 12307
Mir26b 1 74394310 to 74394394 84 + miRNA gene microRNA 26b
Cpgi382 1 74394646 to 74395006 360 CpG island CpG island 382
Tssr12308 1 74394659 to 74394672 13 - TSS region transcription start site region 12308
Tssr164677 1 74394680 to 74394691 11 - TSS region transcription start site region 164677
Tssr12309 1 74394697 to 74394709 12 - TSS region transcription start site region 12309
Tssr12310 1 74394921 to 74394944 23 - TSS region transcription start site region 12310
Cpgi383 1 74395457 to 74395670 213 CpG island CpG island 383
Tssr12311 1 74395579 to 74395590 11 - TSS region transcription start site region 12311
Tssr164673 1 74395650 to 74395678 28 + TSS region transcription start site region 164673
Tssr164678 1 74395929 to 74395953 24 - TSS region transcription start site region 164678
Tssr7418 1 74396556 to 74396573 17 + TSS region transcription start site region 7418
Tssr164679 1 74396585 to 74396598 13 - TSS region transcription start site region 164679
Tssr12312 1 74397026 to 74397057 31 - TSS region transcription start site region 12312
Tssr164674 1 74397196 to 74397209 13 + TSS region transcription start site region 164674
Tssr164675 1 74397226 to 74397237 11 + TSS region transcription start site region 164675
Cpgi384 1 74397289 to 74397893 604 CpG island CpG island 384
Tssr7419 1 74409198 to 74409228 30 + TSS region transcription start site region 7419
Tssr7420 1 74409382 to 74409399 17 + TSS region transcription start site region 7420
Vil1 1 74409384 to 74435560 26176 + protein coding gene villin 1
D1Mit24 1 74411680 to 74411881 201 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 24
Tssr12313 1 74415143 to 74415154 11 - TSS region transcription start site region 12313
Tssr7421 1 74418435 to 74418440 5 + TSS region transcription start site region 7421
Tssr7422 1 74423925 to 74423934 9 + TSS region transcription start site region 7422
Tssr7423 1 74427355 to 74427360 5 + TSS region transcription start site region 7423
Tssr7424 1 74432344 to 74432373 29 + TSS region transcription start site region 7424
Usp37 1 74435511 to 74544284 108773 - protein coding gene ubiquitin specific peptidase 37
Tssr12314 1 74438892 to 74438902 10 - TSS region transcription start site region 12314
D1Mit181 1 74477076 to 74477206 130 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 181
Gm37733 1 74500340 to 74503301 2961 - unclassified gene predicted gene, 37733
Cpgi385 1 74505311 to 74506917 1606 CpG island CpG island 385
Tssr12315 1 74505680 to 74505713 33 - TSS region transcription start site region 12315
Tssr12316 1 74505787 to 74505844 57 - TSS region transcription start site region 12316
Tssr7425 1 74506023 to 74506038 15 + TSS region transcription start site region 7425
Tssr7426 1 74506044 to 74506105 61 + TSS region transcription start site region 7426
Cnot9 1 74506058 to 74530842 24784 + protein coding gene CCR4-NOT transcription complex, subunit 9
Tssr7427 1 74506111 to 74506120 9 + TSS region transcription start site region 7427
Tssr7428 1 74506309 to 74506374 65 + TSS region transcription start site region 7428
Tssr7429 1 74506378 to 74506387 9 + TSS region transcription start site region 7429
Tssr7430 1 74506702 to 74506718 16 + TSS region transcription start site region 7430
Tssr7431 1 74511407 to 74511416 9 + TSS region transcription start site region 7431
Tssr7432 1 74529248 to 74529252 4 + TSS region transcription start site region 7432
Tssr7433 1 74541433 to 74541449 16 + TSS region transcription start site region 7433
Tssr122 1 74541459 to 74541466 7 + TSS region transcription start site region 122
Plcd4 1 74541791 to 74565977 24186 + protein coding gene phospholipase C, delta 4
Tssr7434 1 74542861 to 74542877 16 + TSS region transcription start site region 7434
Tssr7435 1 74542881 to 74542918 37 + TSS region transcription start site region 7435
Tssr12317 1 74544275 to 74544307 32 - TSS region transcription start site region 12317
Tssr7436 1 74544345 to 74544367 22 + TSS region transcription start site region 7436
Zfp142 1 74566423 to 74588073 21650 - protein coding gene zinc finger protein 142
Gm25035 1 74586896 to 74586972 76 - miRNA gene predicted gene, 25035
Cpgi386 1 74587422 to 74588565 1143 CpG island CpG island 386
Tssr12318 1 74587964 to 74588041 77 - TSS region transcription start site region 12318
Tssr12319 1 74588117 to 74588145 28 - TSS region transcription start site region 12319
Tssr12320 1 74588212 to 74588230 18 - TSS region transcription start site region 12320
Bcs1l 1 74588289 to 74592443 4154 + protein coding gene BCS1-like (yeast)
Tssr7437 1 74588309 to 74588328 19 + TSS region transcription start site region 7437
Tssr7438 1 74588347 to 74588383 36 + TSS region transcription start site region 7438
Rnf25 1 74593748 to 74601397 7649 - protein coding gene ring finger protein 25
Tssr12321 1 74600583 to 74600622 39 - TSS region transcription start site region 12321
Cpgi387 1 74600910 to 74601557 647 CpG island CpG island 387
Tssr12322 1 74601364 to 74601402 38 - TSS region transcription start site region 12322
Tssr7439 1 74601441 to 74601520 79 + TSS region transcription start site region 7439
Stk36 1 74601450 to 74636894 35444 + protein coding gene serine/threonine kinase 36
Tssr7440 1 74601548 to 74601558 10 + TSS region transcription start site region 7440
Tssr7441 1 74626304 to 74626329 25 + TSS region transcription start site region 7441
Cpgi388 1 74661439 to 74662206 767 CpG island CpG island 388
Tssr7442 1 74661550 to 74661568 18 + TSS region transcription start site region 7442
Tssr7443 1 74661633 to 74661656 23 + TSS region transcription start site region 7443
Ttll4 1 74661645 to 74701832 40187 + protein coding gene tubulin tyrosine ligase-like family, member 4
Tssr7444 1 74661698 to 74661713 15 + TSS region transcription start site region 7444
Tssr7445 1 74661714 to 74661789 75 + TSS region transcription start site region 7445
Tssr7446 1 74661794 to 74661832 38 + TSS region transcription start site region 7446
Tssr7447 1 74662096 to 74662116 20 + TSS region transcription start site region 7447
Tssr7448 1 74666262 to 74666266 4 + TSS region transcription start site region 7448
Tssr7449 1 74713129 to 74713142 13 + TSS region transcription start site region 7449
Tssr7450 1 74713143 to 74713166 23 + TSS region transcription start site region 7450
Tssr7451 1 74713173 to 74713206 33 + TSS region transcription start site region 7451
Tssr7452 1 74713210 to 74713221 11 + TSS region transcription start site region 7452
Tssr7453 1 74713270 to 74713298 28 + TSS region transcription start site region 7453
Tssr7454 1 74713303 to 74713332 29 + TSS region transcription start site region 7454
Cpgi389 1 74713525 to 74713940 415 CpG island CpG island 389
Tssr7455 1 74713551 to 74713568 17 + TSS region transcription start site region 7455
Cyp27a1 1 74713574 to 74737892 24318 + protein coding gene cytochrome P450, family 27, subfamily a, polypeptide 1
Tssr7456 1 74716271 to 74716275 4 + TSS region transcription start site region 7456
Tssr7457 1 74732025 to 74732042 17 + TSS region transcription start site region 7457
Prkag3 1 74738922 to 74749221 10299 - protein coding gene protein kinase, AMP-activated, gamma 3 non-catalytic subunit
Tssr12323 1 74747354 to 74747363 9 - TSS region transcription start site region 12323
Cpgi390 1 74748601 to 74749076 475 CpG island CpG island 390
Tssr12324 1 74748854 to 74748887 33 - TSS region transcription start site region 12324
Tssr12325 1 74749440 to 74749453 13 - TSS region transcription start site region 12325
Gm27507 1 74764798 to 74764890 92 + unclassified non-coding RNA gene predicted gene, 27507
Cpgi391 1 74771110 to 74772636 1526 CpG island CpG island 391
Tssr7458 1 74771725 to 74771751 26 + TSS region transcription start site region 7458
Tssr7459 1 74771762 to 74771791 29 + TSS region transcription start site region 7459
Tssr7460 1 74771886 to 74771911 25 + TSS region transcription start site region 7460
Wnt6 1 74771892 to 74785322 13430 + protein coding gene wingless-type MMTV integration site family, member 6
Tssr7461 1 74771914 to 74771932 18 + TSS region transcription start site region 7461
Tssr7462 1 74772012 to 74772019 7 + TSS region transcription start site region 7462
Gm29539 1 74774943 to 74777405 2462 - antisense lncRNA gene predicted gene 29539
Tssr7463 1 74779414 to 74779436 22 + TSS region transcription start site region 7463
Cpgi392 1 74782182 to 74783142 960 CpG island CpG island 392
Cpgi393 1 74783725 to 74784822 1097 CpG island CpG island 393
Gm32099 1 74787169 to 74795333 8164 - lncRNA gene predicted gene, 32099
Cpgi394 1 74791242 to 74792366 1124 CpG island CpG island 394
Tssr7464 1 74791750 to 74791768 18 + TSS region transcription start site region 7464
Tssr7465 1 74791806 to 74791818 12 + TSS region transcription start site region 7465
Wnt10a 1 74792019 to 74804176 12157 + protein coding gene wingless-type MMTV integration site family, member 10A
Tssr7466 1 74792023 to 74792076 53 + TSS region transcription start site region 7466
Tssr7467 1 74792137 to 74792157 20 + TSS region transcription start site region 7467
Cpgi395 1 74794172 to 74795228 1056 CpG island CpG island 395
Tssr7468 1 74794637 to 74794650 13 + TSS region transcription start site region 7468
Tssr7469 1 74794713 to 74794716 3 + TSS region transcription start site region 7469
Cpgi396 1 74800426 to 74801006 580 CpG island CpG island 396
Cpgi397 1 74802993 to 74803936 943 CpG island CpG island 397
Cpgi398 1 74807017 to 74807293 276 CpG island CpG island 398
n-TGgcc3 1 74816747 to 74816817 70 - tRNA gene nuclear encoded tRNA glycine 3 (anticodon GCC)
Cpgi399 1 74816832 to 74817315 483 CpG island CpG island 399
Tssr7470 1 74817000 to 74817039 39 + TSS region transcription start site region 7470
Tssr7471 1 74817041 to 74817064 23 + TSS region transcription start site region 7471
Tssr7472 1 74817065 to 74817076 11 + TSS region transcription start site region 7472
Gm32275 1 74820813 to 74843532 22719 - lncRNA gene predicted gene, 32275
Gm16582 1 74850895 to 74879953 29058 + lncRNA gene predicted gene 16582
Tssr12326 1 74851106 to 74851114 8 - TSS region transcription start site region 12326
Cpgi400 1 74854460 to 74856610 2150 CpG island CpG island 400
Tssr7473 1 74854910 to 74854945 35 + TSS region transcription start site region 7473
Tssr7474 1 74854954 to 74854965 11 + TSS region transcription start site region 7474
Cdk5r2 1 74855029 to 74857732 2703 + protein coding gene cyclin-dependent kinase 5, regulatory subunit 2 (p39)
Tssr7475 1 74855203 to 74855216 13 + TSS region transcription start site region 7475
Tssr7476 1 74856345 to 74856365 20 + TSS region transcription start site region 7476
Tssr7477 1 74856542 to 74856552 10 + TSS region transcription start site region 7477
Tssr7478 1 74856623 to 74856626 3 + TSS region transcription start site region 7478
Tssr7479 1 74856628 to 74856651 23 + TSS region transcription start site region 7479
Cpgi401 1 74857252 to 74857443 191 CpG island CpG island 401
Cpgi402 1 74858088 to 74859113 1025 CpG island CpG island 402
Fev 1 74881509 to 74885419 3910 - protein coding gene FEV (ETS oncogene family)
Cpgi403 1 74881743 to 74883225 1482 CpG island CpG island 403
Cpgi404 1 74884370 to 74886013 1643 CpG island CpG island 404
Tssr7480 1 74884730 to 74884739 9 + TSS region transcription start site region 7480
Tssr7481 1 74885772 to 74885775 3 + TSS region transcription start site region 7481
Cryba2 1 74889934 to 74893143 3209 - protein coding gene crystallin, beta A2
Cpgi405 1 74892664 to 74893699 1035 CpG island CpG island 405
Tssr12327 1 74892813 to 74892826 13 - TSS region transcription start site region 12327
Tssr12328 1 74893109 to 74893123 14 - TSS region transcription start site region 12328
Cpgi406 1 74900381 to 74901220 839 CpG island CpG island 406
Mir375 1 74900658 to 74900721 63 - miRNA gene microRNA 375
Tssr12329 1 74900976 to 74900979 3 - TSS region transcription start site region 12329
Cfap65 1 74902071 to 74935599 33528 - protein coding gene cilia and flagella associated protein 65
Gm15841 1 74902371 to 74907653 5282 + antisense lncRNA gene predicted gene 15841
Tssr12330 1 74913045 to 74913049 4 - TSS region transcription start site region 12330
Tssr12331 1 74935549 to 74935613 64 - TSS region transcription start site region 12331
Ihh 1 74945315 to 74951672 6357 - protein coding gene Indian hedgehog
Cpgi407 1 74947869 to 74948634 765 CpG island CpG island 407
Cpgi408 1 74949698 to 74952368 2670 CpG island CpG island 408
Tssr12332 1 74951438 to 74951450 12 - TSS region transcription start site region 12332
Tssr12333 1 74951662 to 74951678 16 - TSS region transcription start site region 12333
D1Mit7 1 74952818 to 74952921 103 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 7
Skl1 1 74952818 to 74952921 103 QTL skeletal size (tail length) 1
Egrm1 1 74952818 to 74952921 103 QTL early growth rate, maternal effect 1
Skull1 1 74952818 to 74952921 103 QTL skull morphology 1
Gm37744 1 74954252 to 74955841 1589 + unclassified gene predicted gene, 37744
Nhej1 1 74967346 to 75125226 157880 - protein coding gene nonhomologous end-joining factor 1
Tssr12334 1 74968282 to 74968296 14 - TSS region transcription start site region 12334
D1Mit252 1 75003622 to 75003770 148 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 252
D1Mit252.1 1 75003748 to 75003860 112 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 252.1
Tssr7482 1 75028654 to 75028659 5 + TSS region transcription start site region 7482
D1Mit23 1 75033692 to 75033823 131 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 23
Jckm2 1 133363199 to 74952818 -58410381 QTL juvenile cystic kidney modifier 2
Gcsfis 1 148839837 to 74477076 -74362761 QTL G-CSF induced splenomegaly