Gene symbol | Chromo- some |
Coordinates (bp, mm10) | Size (bp) | Strand | Feature Type | Gene name |
---|---|---|---|---|---|---|
Lrnx11 | 1 | 35383479 | QTL | learning-contextual 11 | ||
Catip | 1 | 7213 | + | protein coding gene | ciliogenesis associated TTC17 interacting protein | |
D1Mcg4 | 1 | 173 | DNA segment | DNA segment, Chr 1, McGill University 4 | ||
Tssr7388 | 1 | 29 | + | TSS region | transcription start site region 7388 | |
Slc11a1 | 1 | 10867 | + | protein coding gene | solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1 | |
Tssr7389 | 1 | 21 | + | TSS region | transcription start site region 7389 | |
Tssr7390 | 1 | 22 | + | TSS region | transcription start site region 7390 | |
Tssr7391 | 1 | 11 | + | TSS region | transcription start site region 7391 | |
Tssr7392 | 1 | 12 | + | TSS region | transcription start site region 7392 | |
Tssr7393 | 1 | 11 | + | TSS region | transcription start site region 7393 | |
Tssr7394 | 1 | 22 | + | TSS region | transcription start site region 7394 | |
Tssr7395 | 1 | 11 | + | TSS region | transcription start site region 7395 | |
Tssr7396 | 1 | 17 | + | TSS region | transcription start site region 7396 | |
Tssr7397 | 1 | 9 | + | TSS region | transcription start site region 7397 | |
Tssr7398 | 1 | 9 | + | TSS region | transcription start site region 7398 | |
Tssr7399 | 1 | 9 | + | TSS region | transcription start site region 7399 | |
Tssr7400 | 1 | 11 | + | TSS region | transcription start site region 7400 | |
Tssr7401 | 1 | 13 | + | TSS region | transcription start site region 7401 | |
Tssr7402 | 1 | 13 | + | TSS region | transcription start site region 7402 | |
Tssr7403 | 1 | 13 | + | TSS region | transcription start site region 7403 | |
Tssr121 | 1 | 7 | + | TSS region | transcription start site region 121 | |
Tssr7404 | 1 | 35 | + | TSS region | transcription start site region 7404 | |
Cpgi378 | 1 | 371 | CpG island | CpG island 378 | ||
Cpgi379 | 1 | 587 | CpG island | CpG island 379 | ||
Cpgi380 | 1 | 1530 | CpG island | CpG island 380 | ||
Tssr7405 | 1 | 7 | + | TSS region | transcription start site region 7405 | |
Tssr7406 | 1 | 61 | + | TSS region | transcription start site region 7406 | |
Tssr7407 | 1 | 16 | + | TSS region | transcription start site region 7407 | |
Tssr7408 | 1 | 9 | + | TSS region | transcription start site region 7408 | |
Tssr7409 | 1 | 11 | + | TSS region | transcription start site region 7409 | |
Tssr7410 | 1 | 17 | + | TSS region | transcription start site region 7410 | |
Ctdsp1 | 1 | 5676 | + | protein coding gene | CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 | |
Tssr7411 | 1 | 52 | + | TSS region | transcription start site region 7411 | |
Tssr7412 | 1 | 29 | + | TSS region | transcription start site region 7412 | |
Tssr7413 | 1 | 20 | + | TSS region | transcription start site region 7413 | |
Tssr7414 | 1 | 24 | + | TSS region | transcription start site region 7414 | |
Tssr7415 | 1 | 23 | + | TSS region | transcription start site region 7415 | |
Tssr7416 | 1 | 13 | + | TSS region | transcription start site region 7416 | |
Tssr7417 | 1 | 11 | + | TSS region | transcription start site region 7417 | |
Cpgi381 | 1 | 237 | CpG island | CpG island 381 | ||
Tssr12306 | 1 | 27 | - | TSS region | transcription start site region 12306 | |
Tssr164676 | 1 | 7 | - | TSS region | transcription start site region 164676 | |
Tssr12307 | 1 | 40 | - | TSS region | transcription start site region 12307 | |
Mir26b | 1 | 84 | + | miRNA gene | microRNA 26b | |
Cpgi382 | 1 | 360 | CpG island | CpG island 382 | ||
Tssr12308 | 1 | 13 | - | TSS region | transcription start site region 12308 | |
Tssr164677 | 1 | 11 | - | TSS region | transcription start site region 164677 | |
Tssr12309 | 1 | 12 | - | TSS region | transcription start site region 12309 | |
Tssr12310 | 1 | 23 | - | TSS region | transcription start site region 12310 | |
Cpgi383 | 1 | 213 | CpG island | CpG island 383 | ||
Tssr12311 | 1 | 11 | - | TSS region | transcription start site region 12311 | |
Tssr164673 | 1 | 28 | + | TSS region | transcription start site region 164673 | |
Tssr164678 | 1 | 24 | - | TSS region | transcription start site region 164678 | |
Tssr7418 | 1 | 17 | + | TSS region | transcription start site region 7418 | |
Tssr164679 | 1 | 13 | - | TSS region | transcription start site region 164679 | |
Tssr12312 | 1 | 31 | - | TSS region | transcription start site region 12312 | |
Tssr164674 | 1 | 13 | + | TSS region | transcription start site region 164674 | |
Tssr164675 | 1 | 11 | + | TSS region | transcription start site region 164675 | |
Cpgi384 | 1 | 604 | CpG island | CpG island 384 | ||
Tssr7419 | 1 | 30 | + | TSS region | transcription start site region 7419 | |
Tssr7420 | 1 | 17 | + | TSS region | transcription start site region 7420 | |
Vil1 | 1 | 26176 | + | protein coding gene | villin 1 | |
D1Mit24 | 1 | 201 | DNA segment | DNA segment, Chr 1, Massachusetts Institute of Technology 24 | ||
Tssr12313 | 1 | 11 | - | TSS region | transcription start site region 12313 | |
Tssr7421 | 1 | 5 | + | TSS region | transcription start site region 7421 | |
Tssr7422 | 1 | 9 | + | TSS region | transcription start site region 7422 | |
Tssr7423 | 1 | 5 | + | TSS region | transcription start site region 7423 | |
Tssr7424 | 1 | 29 | + | TSS region | transcription start site region 7424 | |
Usp37 | 1 | 108773 | - | protein coding gene | ubiquitin specific peptidase 37 | |
Tssr12314 | 1 | 10 | - | TSS region | transcription start site region 12314 | |
D1Mit181 | 1 | 130 | DNA segment | DNA segment, Chr 1, Massachusetts Institute of Technology 181 | ||
Gm37733 | 1 | 2961 | - | unclassified gene | predicted gene, 37733 | |
Cpgi385 | 1 | 1606 | CpG island | CpG island 385 | ||
Tssr12315 | 1 | 33 | - | TSS region | transcription start site region 12315 | |
Tssr12316 | 1 | 57 | - | TSS region | transcription start site region 12316 | |
Tssr7425 | 1 | 15 | + | TSS region | transcription start site region 7425 | |
Tssr7426 | 1 | 61 | + | TSS region | transcription start site region 7426 | |
Cnot9 | 1 | 24784 | + | protein coding gene | CCR4-NOT transcription complex, subunit 9 | |
Tssr7427 | 1 | 9 | + | TSS region | transcription start site region 7427 | |
Tssr7428 | 1 | 65 | + | TSS region | transcription start site region 7428 | |
Tssr7429 | 1 | 9 | + | TSS region | transcription start site region 7429 | |
Tssr7430 | 1 | 16 | + | TSS region | transcription start site region 7430 | |
Tssr7431 | 1 | 9 | + | TSS region | transcription start site region 7431 | |
Tssr7432 | 1 | 4 | + | TSS region | transcription start site region 7432 | |
Tssr7433 | 1 | 16 | + | TSS region | transcription start site region 7433 | |
Tssr122 | 1 | 7 | + | TSS region | transcription start site region 122 | |
Plcd4 | 1 | 24186 | + | protein coding gene | phospholipase C, delta 4 | |
Tssr7434 | 1 | 16 | + | TSS region | transcription start site region 7434 | |
Tssr7435 | 1 | 37 | + | TSS region | transcription start site region 7435 | |
Tssr12317 | 1 | 32 | - | TSS region | transcription start site region 12317 | |
Tssr7436 | 1 | 22 | + | TSS region | transcription start site region 7436 | |
Zfp142 | 1 | 21650 | - | protein coding gene | zinc finger protein 142 | |
Gm25035 | 1 | 76 | - | miRNA gene | predicted gene, 25035 | |
Cpgi386 | 1 | 1143 | CpG island | CpG island 386 | ||
Tssr12318 | 1 | 77 | - | TSS region | transcription start site region 12318 | |
Tssr12319 | 1 | 28 | - | TSS region | transcription start site region 12319 | |
Tssr12320 | 1 | 18 | - | TSS region | transcription start site region 12320 | |
Bcs1l | 1 | 4154 | + | protein coding gene | BCS1-like (yeast) | |
Tssr7437 | 1 | 19 | + | TSS region | transcription start site region 7437 | |
Tssr7438 | 1 | 36 | + | TSS region | transcription start site region 7438 | |
Rnf25 | 1 | 7649 | - | protein coding gene | ring finger protein 25 | |
Tssr12321 | 1 | 39 | - | TSS region | transcription start site region 12321 | |
Cpgi387 | 1 | 647 | CpG island | CpG island 387 | ||
Tssr12322 | 1 | 38 | - | TSS region | transcription start site region 12322 | |
Tssr7439 | 1 | 79 | + | TSS region | transcription start site region 7439 | |
Stk36 | 1 | 35444 | + | protein coding gene | serine/threonine kinase 36 | |
Tssr7440 | 1 | 10 | + | TSS region | transcription start site region 7440 | |
Tssr7441 | 1 | 25 | + | TSS region | transcription start site region 7441 | |
Cpgi388 | 1 | 767 | CpG island | CpG island 388 | ||
Tssr7442 | 1 | 18 | + | TSS region | transcription start site region 7442 | |
Tssr7443 | 1 | 23 | + | TSS region | transcription start site region 7443 | |
Ttll4 | 1 | 40187 | + | protein coding gene | tubulin tyrosine ligase-like family, member 4 | |
Tssr7444 | 1 | 15 | + | TSS region | transcription start site region 7444 | |
Tssr7445 | 1 | 75 | + | TSS region | transcription start site region 7445 | |
Tssr7446 | 1 | 38 | + | TSS region | transcription start site region 7446 | |
Tssr7447 | 1 | 20 | + | TSS region | transcription start site region 7447 | |
Tssr7448 | 1 | 4 | + | TSS region | transcription start site region 7448 | |
Tssr7449 | 1 | 13 | + | TSS region | transcription start site region 7449 | |
Tssr7450 | 1 | 23 | + | TSS region | transcription start site region 7450 | |
Tssr7451 | 1 | 33 | + | TSS region | transcription start site region 7451 | |
Tssr7452 | 1 | 11 | + | TSS region | transcription start site region 7452 | |
Tssr7453 | 1 | 28 | + | TSS region | transcription start site region 7453 | |
Tssr7454 | 1 | 29 | + | TSS region | transcription start site region 7454 | |
Cpgi389 | 1 | 415 | CpG island | CpG island 389 | ||
Tssr7455 | 1 | 17 | + | TSS region | transcription start site region 7455 | |
Cyp27a1 | 1 | 24318 | + | protein coding gene | cytochrome P450, family 27, subfamily a, polypeptide 1 | |
Tssr7456 | 1 | 4 | + | TSS region | transcription start site region 7456 | |
Tssr7457 | 1 | 17 | + | TSS region | transcription start site region 7457 | |
Prkag3 | 1 | 10299 | - | protein coding gene | protein kinase, AMP-activated, gamma 3 non-catalytic subunit | |
Tssr12323 | 1 | 9 | - | TSS region | transcription start site region 12323 | |
Cpgi390 | 1 | 475 | CpG island | CpG island 390 | ||
Tssr12324 | 1 | 33 | - | TSS region | transcription start site region 12324 | |
Tssr12325 | 1 | 13 | - | TSS region | transcription start site region 12325 | |
Gm27507 | 1 | 92 | + | unclassified non-coding RNA gene | predicted gene, 27507 | |
Cpgi391 | 1 | 1526 | CpG island | CpG island 391 | ||
Tssr7458 | 1 | 26 | + | TSS region | transcription start site region 7458 | |
Tssr7459 | 1 | 29 | + | TSS region | transcription start site region 7459 | |
Tssr7460 | 1 | 25 | + | TSS region | transcription start site region 7460 | |
Wnt6 | 1 | 13430 | + | protein coding gene | wingless-type MMTV integration site family, member 6 | |
Tssr7461 | 1 | 18 | + | TSS region | transcription start site region 7461 | |
Tssr7462 | 1 | 7 | + | TSS region | transcription start site region 7462 | |
Gm29539 | 1 | 2462 | - | antisense lncRNA gene | predicted gene 29539 | |
Tssr7463 | 1 | 22 | + | TSS region | transcription start site region 7463 | |
Cpgi392 | 1 | 960 | CpG island | CpG island 392 | ||
Cpgi393 | 1 | 1097 | CpG island | CpG island 393 | ||
Gm32099 | 1 | 8164 | - | lncRNA gene | predicted gene, 32099 | |
Cpgi394 | 1 | 1124 | CpG island | CpG island 394 | ||
Tssr7464 | 1 | 18 | + | TSS region | transcription start site region 7464 | |
Tssr7465 | 1 | 12 | + | TSS region | transcription start site region 7465 | |
Wnt10a | 1 | 12157 | + | protein coding gene | wingless-type MMTV integration site family, member 10A | |
Tssr7466 | 1 | 53 | + | TSS region | transcription start site region 7466 | |
Tssr7467 | 1 | 20 | + | TSS region | transcription start site region 7467 | |
Cpgi395 | 1 | 1056 | CpG island | CpG island 395 | ||
Tssr7468 | 1 | 13 | + | TSS region | transcription start site region 7468 | |
Tssr7469 | 1 | 3 | + | TSS region | transcription start site region 7469 | |
Cpgi396 | 1 | 580 | CpG island | CpG island 396 | ||
Cpgi397 | 1 | 943 | CpG island | CpG island 397 | ||
Cpgi398 | 1 | 276 | CpG island | CpG island 398 | ||
n-TGgcc3 | 1 | 70 | - | tRNA gene | nuclear encoded tRNA glycine 3 (anticodon GCC) | |
Cpgi399 | 1 | 483 | CpG island | CpG island 399 | ||
Tssr7470 | 1 | 39 | + | TSS region | transcription start site region 7470 | |
Tssr7471 | 1 | 23 | + | TSS region | transcription start site region 7471 | |
Tssr7472 | 1 | 11 | + | TSS region | transcription start site region 7472 | |
Gm32275 | 1 | 22719 | - | lncRNA gene | predicted gene, 32275 | |
Gm16582 | 1 | 29058 | + | lncRNA gene | predicted gene 16582 | |
Tssr12326 | 1 | 8 | - | TSS region | transcription start site region 12326 | |
Cpgi400 | 1 | 2150 | CpG island | CpG island 400 | ||
Tssr7473 | 1 | 35 | + | TSS region | transcription start site region 7473 | |
Tssr7474 | 1 | 11 | + | TSS region | transcription start site region 7474 | |
Cdk5r2 | 1 | 2703 | + | protein coding gene | cyclin-dependent kinase 5, regulatory subunit 2 (p39) | |
Tssr7475 | 1 | 13 | + | TSS region | transcription start site region 7475 | |
Tssr7476 | 1 | 20 | + | TSS region | transcription start site region 7476 | |
Tssr7477 | 1 | 10 | + | TSS region | transcription start site region 7477 | |
Tssr7478 | 1 | 3 | + | TSS region | transcription start site region 7478 | |
Tssr7479 | 1 | 23 | + | TSS region | transcription start site region 7479 | |
Cpgi401 | 1 | 191 | CpG island | CpG island 401 | ||
Cpgi402 | 1 | 1025 | CpG island | CpG island 402 | ||
Fev | 1 | 3910 | - | protein coding gene | FEV (ETS oncogene family) | |
Cpgi403 | 1 | 1482 | CpG island | CpG island 403 | ||
Cpgi404 | 1 | 1643 | CpG island | CpG island 404 | ||
Tssr7480 | 1 | 9 | + | TSS region | transcription start site region 7480 | |
Tssr7481 | 1 | 3 | + | TSS region | transcription start site region 7481 | |
Cryba2 | 1 | 3209 | - | protein coding gene | crystallin, beta A2 | |
Cpgi405 | 1 | 1035 | CpG island | CpG island 405 | ||
Tssr12327 | 1 | 13 | - | TSS region | transcription start site region 12327 | |
Tssr12328 | 1 | 14 | - | TSS region | transcription start site region 12328 | |
Cpgi406 | 1 | 839 | CpG island | CpG island 406 | ||
Mir375 | 1 | 63 | - | miRNA gene | microRNA 375 | |
Tssr12329 | 1 | 3 | - | TSS region | transcription start site region 12329 | |
Cfap65 | 1 | 33528 | - | protein coding gene | cilia and flagella associated protein 65 | |
Gm15841 | 1 | 5282 | + | antisense lncRNA gene | predicted gene 15841 | |
Tssr12330 | 1 | 4 | - | TSS region | transcription start site region 12330 | |
Tssr12331 | 1 | 64 | - | TSS region | transcription start site region 12331 | |
Ihh | 1 | 6357 | - | protein coding gene | Indian hedgehog | |
Cpgi407 | 1 | 765 | CpG island | CpG island 407 | ||
Cpgi408 | 1 | 2670 | CpG island | CpG island 408 | ||
Tssr12332 | 1 | 12 | - | TSS region | transcription start site region 12332 | |
Tssr12333 | 1 | 16 | - | TSS region | transcription start site region 12333 | |
Skl1 | 1 | 103 | QTL | skeletal size (tail length) 1 | ||
Skull1 | 1 | 103 | QTL | skull morphology 1 |