Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:74125143-74625172

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190 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lrnx11 1 39093727 to 74477206 35383479 QTL learning-contextual 11
Cpgi371 1 74124094 to 74125242 1148 CpG island CpG island 371
Tssr7353 1 74125535 to 74125568 33 + TSS region transcription start site region 7353
Rufy4 1 74125541 to 74148223 22682 + protein coding gene RUN and FYVE domain containing 4
Tssr12285 1 74150652 to 74150696 44 - TSS region transcription start site region 12285
Tssr7354 1 74153981 to 74154003 22 + TSS region transcription start site region 7354
Cxcr2 1 74153994 to 74161246 7252 + protein coding gene chemokine (C-X-C motif) receptor 2
Tssr7355 1 74154011 to 74154035 24 + TSS region transcription start site region 7355
Tssr7356 1 74154082 to 74154085 3 + TSS region transcription start site region 7356
Tssr7357 1 74155641 to 74155669 28 + TSS region transcription start site region 7357
Tssr7358 1 74155670 to 74155686 16 + TSS region transcription start site region 7358
Tssr7359 1 74155694 to 74155705 11 + TSS region transcription start site region 7359
Tssr119 1 74178640 to 74178646 6 - TSS region transcription start site region 119
Tssr12286 1 74181608 to 74181637 29 - TSS region transcription start site region 12286
Cxcr1 1 74191785 to 74194631 2846 - protein coding gene chemokine (C-X-C motif) receptor 1
Cpgi372 1 74192190 to 74192650 460 CpG island CpG island 372
Tssr12287 1 74194653 to 74194658 5 - TSS region transcription start site region 12287
Mir1928 1 74206554 to 74206620 66 - miRNA gene microRNA 1928
Gm31691 1 74208480 to 74215644 7164 - lncRNA gene predicted gene, 31691
Gm25524 1 74212813 to 74212919 106 + snRNA gene predicted gene, 25524
Tssr7360 1 74233042 to 74233055 13 + TSS region transcription start site region 7360
Cpgi373 1 74236056 to 74237364 1308 CpG island CpG island 373
Tssr7361 1 74236479 to 74236598 119 + TSS region transcription start site region 7361
Arpc2 1 74236505 to 74268213 31708 + protein coding gene actin related protein 2/3 complex, subunit 2
Tssr7362 1 74236602 to 74236628 26 + TSS region transcription start site region 7362
Tssr12288 1 74236651 to 74236681 30 - TSS region transcription start site region 12288
Tssr7363 1 74238292 to 74238320 28 + TSS region transcription start site region 7363
Tssr7364 1 74245986 to 74245989 3 + TSS region transcription start site region 7364
Tssr120 1 74249121 to 74249132 11 + TSS region transcription start site region 120
Tssr7365 1 74260016 to 74260020 4 + TSS region transcription start site region 7365
Tssr7366 1 74261120 to 74261136 16 + TSS region transcription start site region 7366
Tssr7367 1 74263733 to 74263794 61 + TSS region transcription start site region 7367
Tssr7368 1 74267767 to 74267794 27 + TSS region transcription start site region 7368
Tssr7369 1 74267806 to 74267849 43 + TSS region transcription start site region 7369
Tssr12289 1 74267979 to 74267990 11 - TSS region transcription start site region 12289
Tssr12290 1 74268180 to 74268212 32 - TSS region transcription start site region 12290
Tssr7370 1 74277104 to 74277120 16 + TSS region transcription start site region 7370
Gpbar1 1 74278600 to 74279589 989 + protein coding gene G protein-coupled bile acid receptor 1
Aamp 1 74279840 to 74284738 4898 - protein coding gene angio-associated migratory protein
Tssr12291 1 74281112 to 74281147 35 - TSS region transcription start site region 12291
Tssr7371 1 74281156 to 74281176 20 + TSS region transcription start site region 7371
Gm28364 1 74281161 to 74281866 705 + antisense lncRNA gene predicted gene 28364
Tssr7372 1 74281182 to 74281202 20 + TSS region transcription start site region 7372
Tssr7373 1 74281214 to 74281223 9 + TSS region transcription start site region 7373
Tssr7374 1 74281225 to 74281228 3 + TSS region transcription start site region 7374
Cpgi374 1 74284203 to 74285499 1296 CpG island CpG island 374
Tssr12292 1 74284352 to 74284361 9 - TSS region transcription start site region 12292
Tssr12293 1 74284377 to 74284436 59 - TSS region transcription start site region 12293
Tssr7375 1 74284488 to 74284499 11 + TSS region transcription start site region 7375
Tssr12294 1 74284636 to 74284712 76 - TSS region transcription start site region 12294
Pnkd 1 74284930 to 74353694 68764 + protein coding gene paroxysmal nonkinesiogenic dyskinesia
Tssr7376 1 74285039 to 74285072 33 + TSS region transcription start site region 7376
Gm37503 1 74287542 to 74287860 318 - unclassified gene predicted gene, 37503
Tmbim1 1 74288247 to 74304336 16089 - protein coding gene transmembrane BAX inhibitor motif containing 1
Tssr7377 1 74293956 to 74293983 27 + TSS region transcription start site region 7377
Tssr12295 1 74295281 to 74295302 21 - TSS region transcription start site region 12295
Tssr12296 1 74295318 to 74295404 86 - TSS region transcription start site region 12296
Gm29358 1 74295603 to 74298867 3264 + sense intronic lncRNA gene predicted gene 29358
Tssr7378 1 74295634 to 74295647 13 + TSS region transcription start site region 7378
Tssr7379 1 74295663 to 74295672 9 + TSS region transcription start site region 7379
Tssr12297 1 74295785 to 74295794 9 - TSS region transcription start site region 12297
Tssr7380 1 74295998 to 74296001 3 + TSS region transcription start site region 7380
D1Ertd408e 1 74298884 to 74299094 210 DNA segment DNA segment, Chr 1, ERATO Doi 408, expressed
Tssr7381 1 74303275 to 74303281 6 + TSS region transcription start site region 7381
Cpgi375 1 74303664 to 74304363 699 CpG island CpG island 375
2410125D13Rik 1 74303679 to 74304568 889 unclassified gene RIKEN cDNA 2410125D13 gene
Tssr12298 1 74303937 to 74303978 41 - TSS region transcription start site region 12298
Tssr12299 1 74304146 to 74304187 41 - TSS region transcription start site region 12299
Tssr12300 1 74304191 to 74304202 11 - TSS region transcription start site region 12300
Tssr7382 1 74304288 to 74304293 5 + TSS region transcription start site region 7382
Tssr12301 1 74304313 to 74304343 30 - TSS region transcription start site region 12301
Tssr12302 1 74304345 to 74304377 32 - TSS region transcription start site region 12302
Tssr12303 1 74304386 to 74304407 21 - TSS region transcription start site region 12303
Tssr12304 1 74305607 to 74305621 14 - TSS region transcription start site region 12304
Gm37931 1 74307848 to 74310713 2865 + unclassified gene predicted gene, 37931
Cpgi376 1 74332309 to 74332879 570 CpG island CpG island 376
Tssr7383 1 74332596 to 74332641 45 + TSS region transcription start site region 7383
Tssr7384 1 74332649 to 74332692 43 + TSS region transcription start site region 7384
Tssr12305 1 74337818 to 74337848 30 - TSS region transcription start site region 12305
Tssr7385 1 74351970 to 74351989 19 + TSS region transcription start site region 7385
Tssr7386 1 74352447 to 74352468 21 + TSS region transcription start site region 7386
Catip 1 74362108 to 74369321 7213 + protein coding gene ciliogenesis associated TTC17 interacting protein
Tssr7387 1 74362122 to 74362156 34 + TSS region transcription start site region 7387
Cpgi377 1 74368189 to 74369159 970 CpG island CpG island 377
D1Mcg4 1 74374801 to 74374974 173 DNA segment DNA segment, Chr 1, McGill University 4
Tssr7388 1 74375143 to 74375172 29 + TSS region transcription start site region 7388
Slc11a1 1 74375195 to 74386062 10867 + protein coding gene solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1
Tssr7389 1 74375208 to 74375229 21 + TSS region transcription start site region 7389
Tssr7390 1 74375235 to 74375257 22 + TSS region transcription start site region 7390
Tssr7391 1 74375258 to 74375269 11 + TSS region transcription start site region 7391
Tssr7392 1 74375277 to 74375289 12 + TSS region transcription start site region 7392
Tssr7393 1 74375566 to 74375577 11 + TSS region transcription start site region 7393
Tssr7394 1 74375583 to 74375605 22 + TSS region transcription start site region 7394
Tssr7395 1 74377148 to 74377159 11 + TSS region transcription start site region 7395
Tssr7396 1 74380901 to 74380918 17 + TSS region transcription start site region 7396
Tssr7397 1 74381643 to 74381652 9 + TSS region transcription start site region 7397
Tssr7398 1 74381727 to 74381736 9 + TSS region transcription start site region 7398
Tssr7399 1 74381742 to 74381751 9 + TSS region transcription start site region 7399
Tssr7400 1 74381766 to 74381777 11 + TSS region transcription start site region 7400
Tssr7401 1 74382351 to 74382364 13 + TSS region transcription start site region 7401
Tssr7402 1 74382367 to 74382380 13 + TSS region transcription start site region 7402
Tssr7403 1 74382467 to 74382480 13 + TSS region transcription start site region 7403
Tssr121 1 74385287 to 74385294 7 + TSS region transcription start site region 121
Tssr7404 1 74385474 to 74385509 35 + TSS region transcription start site region 7404
Cpgi378 1 74386714 to 74387085 371 CpG island CpG island 378
Cpgi379 1 74389677 to 74390264 587 CpG island CpG island 379
Cpgi380 1 74391290 to 74392820 1530 CpG island CpG island 380
Tssr7405 1 74391390 to 74391397 7 + TSS region transcription start site region 7405
Tssr7406 1 74391416 to 74391477 61 + TSS region transcription start site region 7406
Tssr7407 1 74391479 to 74391495 16 + TSS region transcription start site region 7407
Tssr7408 1 74391541 to 74391550 9 + TSS region transcription start site region 7408
Tssr7409 1 74391562 to 74391573 11 + TSS region transcription start site region 7409
Tssr7410 1 74391577 to 74391594 17 + TSS region transcription start site region 7410
Ctdsp1 1 74391609 to 74397285 5676 + protein coding gene CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1
Tssr7411 1 74391632 to 74391684 52 + TSS region transcription start site region 7411
Tssr7412 1 74391687 to 74391716 29 + TSS region transcription start site region 7412
Tssr7413 1 74391740 to 74391760 20 + TSS region transcription start site region 7413
Tssr7414 1 74391805 to 74391829 24 + TSS region transcription start site region 7414
Tssr7415 1 74391847 to 74391870 23 + TSS region transcription start site region 7415
Tssr7416 1 74391872 to 74391885 13 + TSS region transcription start site region 7416
Tssr7417 1 74393269 to 74393280 11 + TSS region transcription start site region 7417
Cpgi381 1 74393821 to 74394058 237 CpG island CpG island 381
Tssr12306 1 74393854 to 74393881 27 - TSS region transcription start site region 12306
Tssr164676 1 74393893 to 74393900 7 - TSS region transcription start site region 164676
Tssr12307 1 74394044 to 74394084 40 - TSS region transcription start site region 12307
Mir26b 1 74394310 to 74394394 84 + miRNA gene microRNA 26b
Cpgi382 1 74394646 to 74395006 360 CpG island CpG island 382
Tssr12308 1 74394659 to 74394672 13 - TSS region transcription start site region 12308
Tssr164677 1 74394680 to 74394691 11 - TSS region transcription start site region 164677
Tssr12309 1 74394697 to 74394709 12 - TSS region transcription start site region 12309
Tssr12310 1 74394921 to 74394944 23 - TSS region transcription start site region 12310
Cpgi383 1 74395457 to 74395670 213 CpG island CpG island 383
Tssr12311 1 74395579 to 74395590 11 - TSS region transcription start site region 12311
Tssr164673 1 74395650 to 74395678 28 + TSS region transcription start site region 164673
Tssr164678 1 74395929 to 74395953 24 - TSS region transcription start site region 164678
Tssr7418 1 74396556 to 74396573 17 + TSS region transcription start site region 7418
Tssr164679 1 74396585 to 74396598 13 - TSS region transcription start site region 164679
Tssr12312 1 74397026 to 74397057 31 - TSS region transcription start site region 12312
Tssr164674 1 74397196 to 74397209 13 + TSS region transcription start site region 164674
Tssr164675 1 74397226 to 74397237 11 + TSS region transcription start site region 164675
Cpgi384 1 74397289 to 74397893 604 CpG island CpG island 384
Tssr7419 1 74409198 to 74409228 30 + TSS region transcription start site region 7419
Tssr7420 1 74409382 to 74409399 17 + TSS region transcription start site region 7420
Vil1 1 74409384 to 74435560 26176 + protein coding gene villin 1
D1Mit24 1 74411680 to 74411881 201 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 24
Tssr12313 1 74415143 to 74415154 11 - TSS region transcription start site region 12313
Tssr7421 1 74418435 to 74418440 5 + TSS region transcription start site region 7421
Tssr7422 1 74423925 to 74423934 9 + TSS region transcription start site region 7422
Tssr7423 1 74427355 to 74427360 5 + TSS region transcription start site region 7423
Tssr7424 1 74432344 to 74432373 29 + TSS region transcription start site region 7424
Usp37 1 74435511 to 74544284 108773 - protein coding gene ubiquitin specific peptidase 37
Tssr12314 1 74438892 to 74438902 10 - TSS region transcription start site region 12314
D1Mit181 1 74477076 to 74477206 130 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 181
Gm37733 1 74500340 to 74503301 2961 - unclassified gene predicted gene, 37733
Cpgi385 1 74505311 to 74506917 1606 CpG island CpG island 385
Tssr12315 1 74505680 to 74505713 33 - TSS region transcription start site region 12315
Tssr12316 1 74505787 to 74505844 57 - TSS region transcription start site region 12316
Tssr7425 1 74506023 to 74506038 15 + TSS region transcription start site region 7425
Tssr7426 1 74506044 to 74506105 61 + TSS region transcription start site region 7426
Cnot9 1 74506058 to 74530842 24784 + protein coding gene CCR4-NOT transcription complex, subunit 9
Tssr7427 1 74506111 to 74506120 9 + TSS region transcription start site region 7427
Tssr7428 1 74506309 to 74506374 65 + TSS region transcription start site region 7428
Tssr7429 1 74506378 to 74506387 9 + TSS region transcription start site region 7429
Tssr7430 1 74506702 to 74506718 16 + TSS region transcription start site region 7430
Tssr7431 1 74511407 to 74511416 9 + TSS region transcription start site region 7431
Tssr7432 1 74529248 to 74529252 4 + TSS region transcription start site region 7432
Tssr7433 1 74541433 to 74541449 16 + TSS region transcription start site region 7433
Tssr122 1 74541459 to 74541466 7 + TSS region transcription start site region 122
Plcd4 1 74541791 to 74565977 24186 + protein coding gene phospholipase C, delta 4
Tssr7434 1 74542861 to 74542877 16 + TSS region transcription start site region 7434
Tssr7435 1 74542881 to 74542918 37 + TSS region transcription start site region 7435
Tssr12317 1 74544275 to 74544307 32 - TSS region transcription start site region 12317
Tssr7436 1 74544345 to 74544367 22 + TSS region transcription start site region 7436
Zfp142 1 74566423 to 74588073 21650 - protein coding gene zinc finger protein 142
Gm25035 1 74586896 to 74586972 76 - miRNA gene predicted gene, 25035
Cpgi386 1 74587422 to 74588565 1143 CpG island CpG island 386
Tssr12318 1 74587964 to 74588041 77 - TSS region transcription start site region 12318
Tssr12319 1 74588117 to 74588145 28 - TSS region transcription start site region 12319
Tssr12320 1 74588212 to 74588230 18 - TSS region transcription start site region 12320
Bcs1l 1 74588289 to 74592443 4154 + protein coding gene BCS1-like (yeast)
Tssr7437 1 74588309 to 74588328 19 + TSS region transcription start site region 7437
Tssr7438 1 74588347 to 74588383 36 + TSS region transcription start site region 7438
Rnf25 1 74593748 to 74601397 7649 - protein coding gene ring finger protein 25
Tssr12321 1 74600583 to 74600622 39 - TSS region transcription start site region 12321
Cpgi387 1 74600910 to 74601557 647 CpG island CpG island 387
Tssr12322 1 74601364 to 74601402 38 - TSS region transcription start site region 12322
Tssr7439 1 74601441 to 74601520 79 + TSS region transcription start site region 7439
Stk36 1 74601450 to 74636894 35444 + protein coding gene serine/threonine kinase 36
Tssr7440 1 74601548 to 74601558 10 + TSS region transcription start site region 7440
Gcsfis 1 148839837 to 74477076 -74362761 QTL G-CSF induced splenomegaly