Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:72896872-74606874

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332 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
W3q13 1 23070510 to 73937756 50867246 QTL weight 3 weeks QTL 13
W10q6 1 34721057 to 73937756 39216699 QTL weight 10 weeks QTL 6
Lvrq3 1 34721057 to 73937756 39216699 QTL liver weight QTL 3
Lgq5 1 34721057 to 73937756 39216699 QTL late growth QTL 5
Estoq4 1 34721057 to 73937756 39216699 QTL embryo survival total QTL 4
W3q12 1 34721057 to 73937756 39216699 QTL weight 3 weeks QTL 12
W6q14 1 34721057 to 73937756 39216699 QTL weight 6 weeks QTL 14
Lrnx11 1 39093727 to 74477206 35383479 QTL learning-contextual 11
Eae30 1 45378613 to 72935898 27557285 QTL experimental allergic encephalomyelitis susceptibility 30
Gm9551 1 72934100 to 72934963 863 - pseudogene predicted gene 9551
Tssr7344 1 72934900 to 72934924 24 + TSS region transcription start site region 7344
Nidd5k 1 72935789 to 72935898 109 QTL Nidd5 on KK-A
D1Mit380 1 72935789 to 72935898 109 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 380
Gm31047 1 72939071 to 72952744 13673 + lncRNA gene predicted gene, 31047
Tssr7345 1 72940327 to 72940333 6 + TSS region transcription start site region 7345
Tssr7346 1 72942439 to 72942449 10 + TSS region transcription start site region 7346
Tssr7347 1 72942734 to 72942739 5 + TSS region transcription start site region 7347
Tssr7348 1 72942744 to 72942754 10 + TSS region transcription start site region 7348
Gm17846 1 72956148 to 72957738 1590 - pseudogene predicted gene, 17846
Gm31137 1 72984848 to 73006028 21180 + lncRNA gene predicted gene, 31137
Tssr7349 1 73001565 to 73001567 2 + TSS region transcription start site region 7349
Tnp1 1 73015074 to 73015899 825 - protein coding gene transition protein 1
Tssr12208 1 73015884 to 73015901 17 - TSS region transcription start site region 12208
1700027A15Rik 1 73016036 to 73025508 9472 + antisense lncRNA gene RIKEN cDNA 1700027A15 gene
1700110C23Rik 1 73018144 to 73018877 733 unclassified gene RIKEN cDNA 1700110C23 gene
1700016P22Rik 1 73022484 to 73022878 394 unclassified gene RIKEN cDNA 1700016P22 gene
Tssr7350 1 73024585 to 73024590 5 + TSS region transcription start site region 7350
Tssr7351 1 73024603 to 73024621 18 + TSS region transcription start site region 7351
Gm31254 1 73127289 to 73140850 13561 - lncRNA gene predicted gene, 31254
Tssr12209 1 73140652 to 73140692 40 - TSS region transcription start site region 12209
Gm31197 1 73140731 to 73148067 7336 + lncRNA gene predicted gene, 31197
Gm38106 1 73206890 to 73209423 2533 - unclassified gene predicted gene, 38106
Wbcq1 1 73227055 to 73227201 146 QTL white blood cell QTL 1
D1Mit282 1 73227055 to 73227201 146 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 282
Vtbt1 1 73227055 to 73227201 146 QTL vertebral trabecular bone trait 1
D1Mit532 1 73248076 to 73248200 124 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 532
Gm29185 1 73269064 to 73306360 37296 + lincRNA gene predicted gene 29185
Gm29184 1 73311717 to 73312050 333 - pseudogene predicted gene 29184
Tssr12210 1 73354382 to 73354385 3 - TSS region transcription start site region 12210
Gm31344 1 73361286 to 73379587 18301 + lncRNA gene predicted gene, 31344
Pinc 1 73391385 to 73407569 16184 - lincRNA gene pregnancy induced noncoding RNA
Gm27315 1 73392246 to 73392399 153 + unclassified non-coding RNA gene predicted gene, 27315
D530049I02Rik 1 73398968 to 73430779 31811 + lincRNA gene RIKEN cDNA D530049I02 gene
D1Mit482 1 73433098 to 73433238 140 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 482
Gm9553 1 73512046 to 73513017 971 + pseudogene predicted gene 9553
C530043A13Rik 1 73522095 to 73529790 7695 - lincRNA gene RIKEN cDNA C530043A13 gene
Gm29186 1 73528937 to 73536349 7412 + lincRNA gene predicted gene 29186
6030407O03Rik 1 73618381 to 73864466 246085 - lincRNA gene RIKEN cDNA 6030407O03 gene
D1Mit19 1 73687763 to 73687918 155 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 19
Insq6 1 73687763 to 73687918 155 QTL insulin QTL 6
Ses1a 1 73687763 to 73687918 155 QTL salmonella enteritidis susceptibility 1a
D1Mit77 1 73716016 to 73716158 142 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 77
Gm29183 1 73750225 to 73827081 76856 - lincRNA gene predicted gene 29183
Tssr12211 1 73751872 to 73751874 2 - TSS region transcription start site region 12211
Gm25329 1 73763710 to 73763835 125 + rRNA gene predicted gene, 25329
Mir6351 1 73855477 to 73855575 98 - miRNA gene microRNA 6351
Tssr12212 1 73905200 to 73905236 36 - TSS region transcription start site region 12212
Tssr12213 1 73905312 to 73905315 3 - TSS region transcription start site region 12213
Tssr12214 1 73905357 to 73905365 8 - TSS region transcription start site region 12214
Tssr12215 1 73905383 to 73905398 15 - TSS region transcription start site region 12215
Cpgi366 1 73907162 to 73907637 475 CpG island CpG island 366
Tns1 1 73910231 to 74124449 214218 - protein coding gene tensin 1
Cpgi367 1 73914491 to 73914676 185 CpG island CpG island 367
Tssr117 1 73928495 to 73928496 1 - TSS region transcription start site region 117
Tssr12216 1 73928504 to 73928529 25 - TSS region transcription start site region 12216
Tssr12217 1 73929317 to 73929358 41 - TSS region transcription start site region 12217
Tssr12218 1 73930716 to 73930731 15 - TSS region transcription start site region 12218
Tssr12219 1 73930785 to 73930795 10 - TSS region transcription start site region 12219
Tssr12220 1 73930809 to 73930828 19 - TSS region transcription start site region 12220
Tssr12221 1 73937318 to 73937338 20 - TSS region transcription start site region 12221
D1Mit180 1 73937620 to 73937756 136 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 180
Tssr12222 1 73948058 to 73948080 22 - TSS region transcription start site region 12222
Tssr12223 1 73948084 to 73948091 7 - TSS region transcription start site region 12223
Tssr12224 1 73952792 to 73952804 12 - TSS region transcription start site region 12224
Tssr12225 1 73962942 to 73962953 11 - TSS region transcription start site region 12225
Tssr12226 1 73962973 to 73962987 14 - TSS region transcription start site region 12226
Tssr12227 1 73962997 to 73963053 56 - TSS region transcription start site region 12227
Tssr12228 1 73984473 to 73984497 24 - TSS region transcription start site region 12228
Tssr12229 1 73986794 to 73986802 8 - TSS region transcription start site region 12229
Tssr12230 1 73997885 to 73997892 7 - TSS region transcription start site region 12230
Tssr12231 1 73998033 to 73998038 5 - TSS region transcription start site region 12231
Tssr12232 1 73998388 to 73998399 11 - TSS region transcription start site region 12232
Tssr12233 1 73998412 to 73998419 7 - TSS region transcription start site region 12233
Tssr12234 1 73998424 to 73998446 22 - TSS region transcription start site region 12234
Tssr12235 1 73998449 to 73998498 49 - TSS region transcription start site region 12235
Tssr118 1 73998515 to 73998524 9 - TSS region transcription start site region 118
Tssr12236 1 73998526 to 73998533 7 - TSS region transcription start site region 12236
Tssr12237 1 73998545 to 73998548 3 - TSS region transcription start site region 12237
Tssr12238 1 74001505 to 74001516 11 - TSS region transcription start site region 12238
Tssr12239 1 74001526 to 74001555 29 - TSS region transcription start site region 12239
Tssr12240 1 74001564 to 74001585 21 - TSS region transcription start site region 12240
Tssr12241 1 74001938 to 74001942 4 - TSS region transcription start site region 12241
Tssr12242 1 74008491 to 74008512 21 - TSS region transcription start site region 12242
Tssr12243 1 74008521 to 74008553 32 - TSS region transcription start site region 12243
Tssr12244 1 74013219 to 74013230 11 - TSS region transcription start site region 12244
Tssr12245 1 74014652 to 74014694 42 - TSS region transcription start site region 12245
Tssr12246 1 74016569 to 74016576 7 - TSS region transcription start site region 12246
Tssr12247 1 74016582 to 74016593 11 - TSS region transcription start site region 12247
Tssr12248 1 74016604 to 74016627 23 - TSS region transcription start site region 12248
Tssr12249 1 74016630 to 74016641 11 - TSS region transcription start site region 12249
Tssr12250 1 74016654 to 74016663 9 - TSS region transcription start site region 12250
Tssr12251 1 74016719 to 74016728 9 - TSS region transcription start site region 12251
Tssr12252 1 74016765 to 74016778 13 - TSS region transcription start site region 12252
Tssr12253 1 74026923 to 74026955 32 - TSS region transcription start site region 12253
Tssr12254 1 74026960 to 74026971 11 - TSS region transcription start site region 12254
Tssr12255 1 74028522 to 74028528 6 - TSS region transcription start site region 12255
Tssr12256 1 74030824 to 74030846 22 - TSS region transcription start site region 12256
Tssr12257 1 74030862 to 74030878 16 - TSS region transcription start site region 12257
Tssr12258 1 74030881 to 74030894 13 - TSS region transcription start site region 12258
Tssr12259 1 74030897 to 74030907 10 - TSS region transcription start site region 12259
Gm39664 1 74030951 to 74032927 1976 + lncRNA gene predicted gene, 39664
Tssr7352 1 74031329 to 74031338 9 + TSS region transcription start site region 7352
Tssr12260 1 74035324 to 74035352 28 - TSS region transcription start site region 12260
Tssr12261 1 74036202 to 74036224 22 - TSS region transcription start site region 12261
Tssr12262 1 74036225 to 74036235 10 - TSS region transcription start site region 12262
Cpgi368 1 74036828 to 74037396 568 CpG island CpG island 368
Tssr12263 1 74037120 to 74037139 19 - TSS region transcription start site region 12263
Tssr12264 1 74048829 to 74048840 11 - TSS region transcription start site region 12264
Cpgi369 1 74068056 to 74069047 991 CpG island CpG island 369
Tssr12265 1 74068641 to 74068677 36 - TSS region transcription start site region 12265
Tssr12266 1 74068683 to 74068713 30 - TSS region transcription start site region 12266
Tssr12267 1 74068865 to 74068908 43 - TSS region transcription start site region 12267
Tssr12268 1 74068916 to 74068974 58 - TSS region transcription start site region 12268
Tssr12269 1 74069211 to 74069230 19 - TSS region transcription start site region 12269
Tssr12270 1 74069879 to 74069888 9 - TSS region transcription start site region 12270
Tssr12271 1 74070050 to 74070081 31 - TSS region transcription start site region 12271
Tssr12272 1 74070159 to 74070172 13 - TSS region transcription start site region 12272
Tssr12273 1 74070208 to 74070233 25 - TSS region transcription start site region 12273
Tssr12274 1 74091283 to 74091320 37 - TSS region transcription start site region 12274
Tssr12275 1 74091329 to 74091336 7 - TSS region transcription start site region 12275
Tssr12276 1 74093581 to 74093583 2 - TSS region transcription start site region 12276
Gm31637 1 74095284 to 74097049 1765 + lncRNA gene predicted gene, 31637
Tssr12277 1 74096849 to 74096864 15 - TSS region transcription start site region 12277
Cpgi370 1 74098163 to 74099086 923 CpG island CpG island 370
Tssr12278 1 74108298 to 74108309 11 - TSS region transcription start site region 12278
Tssr12279 1 74108314 to 74108340 26 - TSS region transcription start site region 12279
Tssr12280 1 74108356 to 74108370 14 - TSS region transcription start site region 12280
Tssr12281 1 74108372 to 74108381 9 - TSS region transcription start site region 12281
Cpgi371 1 74124094 to 74125242 1148 CpG island CpG island 371
Tssr12282 1 74124420 to 74124466 46 - TSS region transcription start site region 12282
Tssr12283 1 74124482 to 74124495 13 - TSS region transcription start site region 12283
Tssr12284 1 74124515 to 74124572 57 - TSS region transcription start site region 12284
Tssr7353 1 74125535 to 74125568 33 + TSS region transcription start site region 7353
Rufy4 1 74125541 to 74148223 22682 + protein coding gene RUN and FYVE domain containing 4
Tssr12285 1 74150652 to 74150696 44 - TSS region transcription start site region 12285
Tssr7354 1 74153981 to 74154003 22 + TSS region transcription start site region 7354
Cxcr2 1 74153994 to 74161246 7252 + protein coding gene chemokine (C-X-C motif) receptor 2
Tssr7355 1 74154011 to 74154035 24 + TSS region transcription start site region 7355
Tssr7356 1 74154082 to 74154085 3 + TSS region transcription start site region 7356
Tssr7357 1 74155641 to 74155669 28 + TSS region transcription start site region 7357
Tssr7358 1 74155670 to 74155686 16 + TSS region transcription start site region 7358
Tssr7359 1 74155694 to 74155705 11 + TSS region transcription start site region 7359
Tssr119 1 74178640 to 74178646 6 - TSS region transcription start site region 119
Tssr12286 1 74181608 to 74181637 29 - TSS region transcription start site region 12286
Cxcr1 1 74191785 to 74194631 2846 - protein coding gene chemokine (C-X-C motif) receptor 1
Cpgi372 1 74192190 to 74192650 460 CpG island CpG island 372
Tssr12287 1 74194653 to 74194658 5 - TSS region transcription start site region 12287
Mir1928 1 74206554 to 74206620 66 - miRNA gene microRNA 1928
Gm31691 1 74208480 to 74215644 7164 - lncRNA gene predicted gene, 31691
Gm25524 1 74212813 to 74212919 106 + snRNA gene predicted gene, 25524
Tssr7360 1 74233042 to 74233055 13 + TSS region transcription start site region 7360
Cpgi373 1 74236056 to 74237364 1308 CpG island CpG island 373
Tssr7361 1 74236479 to 74236598 119 + TSS region transcription start site region 7361
Arpc2 1 74236505 to 74268213 31708 + protein coding gene actin related protein 2/3 complex, subunit 2
Tssr7362 1 74236602 to 74236628 26 + TSS region transcription start site region 7362
Tssr12288 1 74236651 to 74236681 30 - TSS region transcription start site region 12288
Tssr7363 1 74238292 to 74238320 28 + TSS region transcription start site region 7363
Tssr7364 1 74245986 to 74245989 3 + TSS region transcription start site region 7364
Tssr120 1 74249121 to 74249132 11 + TSS region transcription start site region 120
Tssr7365 1 74260016 to 74260020 4 + TSS region transcription start site region 7365
Tssr7366 1 74261120 to 74261136 16 + TSS region transcription start site region 7366
Tssr7367 1 74263733 to 74263794 61 + TSS region transcription start site region 7367
Tssr7368 1 74267767 to 74267794 27 + TSS region transcription start site region 7368
Tssr7369 1 74267806 to 74267849 43 + TSS region transcription start site region 7369
Tssr12289 1 74267979 to 74267990 11 - TSS region transcription start site region 12289
Tssr12290 1 74268180 to 74268212 32 - TSS region transcription start site region 12290
Tssr7370 1 74277104 to 74277120 16 + TSS region transcription start site region 7370
Gpbar1 1 74278600 to 74279589 989 + protein coding gene G protein-coupled bile acid receptor 1
Aamp 1 74279840 to 74284738 4898 - protein coding gene angio-associated migratory protein
Tssr12291 1 74281112 to 74281147 35 - TSS region transcription start site region 12291
Tssr7371 1 74281156 to 74281176 20 + TSS region transcription start site region 7371
Gm28364 1 74281161 to 74281866 705 + antisense lncRNA gene predicted gene 28364
Tssr7372 1 74281182 to 74281202 20 + TSS region transcription start site region 7372
Tssr7373 1 74281214 to 74281223 9 + TSS region transcription start site region 7373
Tssr7374 1 74281225 to 74281228 3 + TSS region transcription start site region 7374
Cpgi374 1 74284203 to 74285499 1296 CpG island CpG island 374
Tssr12292 1 74284352 to 74284361 9 - TSS region transcription start site region 12292
Tssr12293 1 74284377 to 74284436 59 - TSS region transcription start site region 12293
Tssr7375 1 74284488 to 74284499 11 + TSS region transcription start site region 7375
Tssr12294 1 74284636 to 74284712 76 - TSS region transcription start site region 12294
Pnkd 1 74284930 to 74353694 68764 + protein coding gene paroxysmal nonkinesiogenic dyskinesia
Tssr7376 1 74285039 to 74285072 33 + TSS region transcription start site region 7376
Gm37503 1 74287542 to 74287860 318 - unclassified gene predicted gene, 37503
Tmbim1 1 74288247 to 74304336 16089 - protein coding gene transmembrane BAX inhibitor motif containing 1
Tssr7377 1 74293956 to 74293983 27 + TSS region transcription start site region 7377
Tssr12295 1 74295281 to 74295302 21 - TSS region transcription start site region 12295
Tssr12296 1 74295318 to 74295404 86 - TSS region transcription start site region 12296
Gm29358 1 74295603 to 74298867 3264 + sense intronic lncRNA gene predicted gene 29358
Tssr7378 1 74295634 to 74295647 13 + TSS region transcription start site region 7378
Tssr7379 1 74295663 to 74295672 9 + TSS region transcription start site region 7379