Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:72850652-73430692

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eae30 1 45378613 to 72935898 27557285 QTL experimental allergic encephalomyelitis susceptibility 30
Igfbp2 1 72824503 to 72852474 27971 + protein coding gene insulin-like growth factor binding protein 2
Tssr7331 1 72851995 to 72852004 9 + TSS region transcription start site region 7331
Tssr7332 1 72852024 to 72852060 36 + TSS region transcription start site region 7332
Tssr7333 1 72852069 to 72852076 7 + TSS region transcription start site region 7333
Tssr7334 1 72852084 to 72852095 11 + TSS region transcription start site region 7334
Tssr7335 1 72852100 to 72852104 4 + TSS region transcription start site region 7335
Tssr7336 1 72852154 to 72852162 8 + TSS region transcription start site region 7336
Tssr7337 1 72852175 to 72852189 14 + TSS region transcription start site region 7337
Tssr7338 1 72852215 to 72852222 7 + TSS region transcription start site region 7338
Tssr12184 1 72852216 to 72852247 31 - TSS region transcription start site region 12184
Tssr7339 1 72852239 to 72852244 5 + TSS region transcription start site region 7339
Tssr12185 1 72852278 to 72852313 35 - TSS region transcription start site region 12185
Tssr7340 1 72852304 to 72852316 12 + TSS region transcription start site region 7340
Tssr7341 1 72852421 to 72852432 11 + TSS region transcription start site region 7341
Igfbp5 1 72858065 to 72874865 16800 - protein coding gene insulin-like growth factor binding protein 5
Tssr12186 1 72858462 to 72858489 27 - TSS region transcription start site region 12186
Tssr12187 1 72858734 to 72858758 24 - TSS region transcription start site region 12187
Tssr12188 1 72859038 to 72859074 36 - TSS region transcription start site region 12188
Tssr12189 1 72859799 to 72859813 14 - TSS region transcription start site region 12189
Tssr12190 1 72860295 to 72860309 14 - TSS region transcription start site region 12190
Tssr12191 1 72861028 to 72861039 11 - TSS region transcription start site region 12191
Tssr12192 1 72861496 to 72861519 23 - TSS region transcription start site region 12192
Tssr12193 1 72861661 to 72861672 11 - TSS region transcription start site region 12193
Tssr12194 1 72861841 to 72861871 30 - TSS region transcription start site region 12194
Tssr12195 1 72862201 to 72862223 22 - TSS region transcription start site region 12195
Tssr12196 1 72862295 to 72862306 11 - TSS region transcription start site region 12196
Tssr12197 1 72862313 to 72862325 12 - TSS region transcription start site region 12197
Tssr12198 1 72862329 to 72862379 50 - TSS region transcription start site region 12198
Tssr7342 1 72862364 to 72862379 15 + TSS region transcription start site region 7342
Cpgi362 1 72862365 to 72862604 239 CpG island CpG island 362
Tssr12199 1 72863214 to 72863228 14 - TSS region transcription start site region 12199
Tssr7343 1 72863899 to 72863915 16 + TSS region transcription start site region 7343
Cpgi363 1 72870213 to 72870554 341 CpG island CpG island 363
Cpgi364 1 72871737 to 72872172 435 CpG island CpG island 364
Cpgi365 1 72873535 to 72874763 1228 CpG island CpG island 365
Tssr12200 1 72873877 to 72873917 40 - TSS region transcription start site region 12200
Tssr12201 1 72874021 to 72874053 32 - TSS region transcription start site region 12201
Tssr12202 1 72874145 to 72874208 63 - TSS region transcription start site region 12202
Tssr12203 1 72874247 to 72874262 15 - TSS region transcription start site region 12203
Tssr12204 1 72874389 to 72874408 19 - TSS region transcription start site region 12204
Tssr12205 1 72874412 to 72874451 39 - TSS region transcription start site region 12205
Tssr12206 1 72874538 to 72874547 9 - TSS region transcription start site region 12206
Tssr12207 1 72874877 to 72874891 14 - TSS region transcription start site region 12207
D1Mit281 1 72875530 to 72875655 125 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 281
Gm9551 1 72934100 to 72934963 863 - pseudogene predicted gene 9551
Tssr7344 1 72934900 to 72934924 24 + TSS region transcription start site region 7344
Nidd5k 1 72935789 to 72935898 109 QTL Nidd5 on KK-A
D1Mit380 1 72935789 to 72935898 109 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 380
Gm31047 1 72939071 to 72952744 13673 + lncRNA gene predicted gene, 31047
Tssr7345 1 72940327 to 72940333 6 + TSS region transcription start site region 7345
Tssr7346 1 72942439 to 72942449 10 + TSS region transcription start site region 7346
Tssr7347 1 72942734 to 72942739 5 + TSS region transcription start site region 7347
Tssr7348 1 72942744 to 72942754 10 + TSS region transcription start site region 7348
Gm17846 1 72956148 to 72957738 1590 - pseudogene predicted gene, 17846
Gm31137 1 72984848 to 73006028 21180 + lncRNA gene predicted gene, 31137
Tssr7349 1 73001565 to 73001567 2 + TSS region transcription start site region 7349
Tnp1 1 73015074 to 73015899 825 - protein coding gene transition protein 1
Tssr12208 1 73015884 to 73015901 17 - TSS region transcription start site region 12208
1700027A15Rik 1 73016036 to 73025508 9472 + antisense lncRNA gene RIKEN cDNA 1700027A15 gene
1700110C23Rik 1 73018144 to 73018877 733 unclassified gene RIKEN cDNA 1700110C23 gene
1700016P22Rik 1 73022484 to 73022878 394 unclassified gene RIKEN cDNA 1700016P22 gene
Tssr7350 1 73024585 to 73024590 5 + TSS region transcription start site region 7350
Tssr7351 1 73024603 to 73024621 18 + TSS region transcription start site region 7351
Gm31254 1 73127289 to 73140850 13561 - lncRNA gene predicted gene, 31254
Tssr12209 1 73140652 to 73140692 40 - TSS region transcription start site region 12209
Gm31197 1 73140731 to 73148067 7336 + lncRNA gene predicted gene, 31197
Gm38106 1 73206890 to 73209423 2533 - unclassified gene predicted gene, 38106
Wbcq1 1 73227055 to 73227201 146 QTL white blood cell QTL 1
D1Mit282 1 73227055 to 73227201 146 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 282
Vtbt1 1 73227055 to 73227201 146 QTL vertebral trabecular bone trait 1
D1Mit532 1 73248076 to 73248200 124 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 532
Gm29185 1 73269064 to 73306360 37296 + lincRNA gene predicted gene 29185
Gm29184 1 73311717 to 73312050 333 - pseudogene predicted gene 29184
Tssr12210 1 73354382 to 73354385 3 - TSS region transcription start site region 12210
Gm31344 1 73361286 to 73379587 18301 + lncRNA gene predicted gene, 31344
Pinc 1 73391385 to 73407569 16184 - lincRNA gene pregnancy induced noncoding RNA
Gm27315 1 73392246 to 73392399 153 + unclassified non-coding RNA gene predicted gene, 27315
D530049I02Rik 1 73398968 to 73430779 31811 + lincRNA gene RIKEN cDNA D530049I02 gene
Bmd19 1 108910684 to 73227055 -35683629 QTL bone mineral density 19