Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:71699442-72672307

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97 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm46094 1 71672698 to 71712078 39380 + lncRNA gene predicted gene, 46094
D1Mit127 1 71704330 to 71704462 132 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 127
Gm5829 1 71709705 to 71710055 350 - pseudogene predicted gene 5829
Gm5256 1 71714048 to 71714924 876 - pseudogene predicted gene 5256
Tssr7281 1 71714139 to 71714140 1 + TSS region transcription start site region 7281
Tssr7282 1 71714152 to 71714162 10 + TSS region transcription start site region 7282
Tssr7283 1 71714165 to 71714173 8 + TSS region transcription start site region 7283
Gm39660 1 71728539 to 71741345 12806 - lncRNA gene predicted gene, 39660
Gm30160 1 71728540 to 71749807 21267 + lncRNA gene predicted gene, 30160
Tssr12149 1 71731046 to 71731049 3 - TSS region transcription start site region 12149
Tssr7284 1 71733539 to 71733559 20 + TSS region transcription start site region 7284
Tssr12150 1 71741325 to 71741330 5 - TSS region transcription start site region 12150
D1Mit130 1 71760111 to 71760247 136 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 130
Gm30308 1 71813563 to 71814507 944 + lncRNA gene predicted gene, 30308
Gm45958 1 71823324 to 71835845 12521 + lncRNA gene predicted gene, 45958
Gm37217 1 71843090 to 71846610 3520 - unclassified gene predicted gene, 37217
Tssr7285 1 71887916 to 71887928 12 + TSS region transcription start site region 7285
Tssr7286 1 71887974 to 71888003 29 + TSS region transcription start site region 7286
Tssr7287 1 71888055 to 71888067 12 + TSS region transcription start site region 7287
Tssr7288 1 71888076 to 71888121 45 + TSS region transcription start site region 7288
Gm8883 1 71888112 to 71891204 3092 + lincRNA gene predicted gene 8883
Tssr7289 1 71888474 to 71888491 17 + TSS region transcription start site region 7289
Gm28818 1 71894415 to 71899295 4880 - lincRNA gene predicted gene 28818
Tssr12151 1 71896445 to 71896452 7 - TSS region transcription start site region 12151
Tssr7290 1 71913515 to 71913521 6 + TSS region transcription start site region 7290
Tssr12152 1 71938615 to 71938619 4 - TSS region transcription start site region 12152
4933417E11Rik 1 71958998 to 72005195 46197 - lincRNA gene RIKEN cDNA 4933417E11 gene
4930556G22Rik 1 71983681 to 72038731 55050 - lincRNA gene RIKEN cDNA 4930556G22 gene
Gm5528 1 72004288 to 72004767 479 + pseudogene predicted gene 5528
Tssr7291 1 72074380 to 72074400 20 + TSS region transcription start site region 7291
Tssr7292 1 72087816 to 72087820 4 + TSS region transcription start site region 7292
Gm8885 1 72087857 to 72088454 597 + pseudogene predicted gene 8885
Gm4319 1 72107155 to 72122001 14846 - lincRNA gene predicted gene 4319
Tssr12153 1 72146898 to 72146908 10 - TSS region transcription start site region 12153
Tssr12154 1 72146915 to 72146931 16 - TSS region transcription start site region 12154
Mreg 1 72159442 to 72212307 52865 - protein coding gene melanoregulin
Tssr12155 1 72186503 to 72186507 4 - TSS region transcription start site region 12155
Tssr12156 1 72201318 to 72201322 4 - TSS region transcription start site region 12156
Cpgi350 1 72211615 to 72212481 866 CpG island CpG island 350
Tssr12157 1 72212249 to 72212267 18 - TSS region transcription start site region 12157
Tssr12158 1 72212310 to 72212318 8 - TSS region transcription start site region 12158
Tssr12159 1 72216867 to 72216877 10 - TSS region transcription start site region 12159
Tssr7293 1 72221751 to 72221774 23 + TSS region transcription start site region 7293
Cpgi351 1 72225725 to 72226033 308 CpG island CpG island 351
Gm25360 1 72226240 to 72226430 190 + snRNA gene predicted gene, 25360
Tssr12160 1 72228992 to 72229016 24 - TSS region transcription start site region 12160
D230017M19Rik 1 72236011 to 72272340 36329 + lincRNA gene RIKEN cDNA D230017M19 gene
Cpgi352 1 72236268 to 72236732 464 CpG island CpG island 352
Tssr12161 1 72236346 to 72236391 45 - TSS region transcription start site region 12161
Tssr7294 1 72236445 to 72236493 48 + TSS region transcription start site region 7294
Tssr7295 1 72236499 to 72236524 25 + TSS region transcription start site region 7295
Tssr7296 1 72236601 to 72236611 10 + TSS region transcription start site region 7296
Gm23472 1 72236946 to 72237136 190 + snRNA gene predicted gene, 23472
Tssr7297 1 72237416 to 72237421 5 + TSS region transcription start site region 7297
Tssr12162 1 72242729 to 72242739 10 - TSS region transcription start site region 12162
Cpgi353 1 72243737 to 72244227 490 CpG island CpG island 353
Gm24497 1 72244213 to 72244403 190 + snRNA gene predicted gene, 24497
Cpgi354 1 72254658 to 72254928 270 CpG island CpG island 354
Gm25939 1 72255008 to 72255198 190 + snRNA gene predicted gene, 25939
Tssr12163 1 72255682 to 72255694 12 - TSS region transcription start site region 12163
Pecr 1 72259172 to 72284314 25142 - protein coding gene peroxisomal trans-2-enoyl-CoA reductase
Cpgi355 1 72284036 to 72284493 457 CpG island CpG island 355
Tssr12164 1 72284224 to 72284228 4 - TSS region transcription start site region 12164
Tssr12165 1 72284248 to 72284266 18 - TSS region transcription start site region 12165
Tssr114 1 72284272 to 72284279 7 - TSS region transcription start site region 114
Tssr115 1 72284288 to 72284293 5 - TSS region transcription start site region 115
Tssr116 1 72284305 to 72284313 8 - TSS region transcription start site region 116
Tssr7298 1 72284367 to 72284419 52 + TSS region transcription start site region 7298
Tmem169 1 72284369 to 72303104 18735 + protein coding gene transmembrane protein 169
Cpgi356 1 72307314 to 72307883 569 CpG island CpG island 356
Tssr7299 1 72307413 to 72307450 37 + TSS region transcription start site region 7299
Xrcc5 1 72307421 to 72394952 87531 + protein coding gene X-ray repair complementing defective repair in Chinese hamster cells 5
Tssr7300 1 72307458 to 72307475 17 + TSS region transcription start site region 7300
Tssr7301 1 72307491 to 72307502 11 + TSS region transcription start site region 7301
Tssr7302 1 72307514 to 72307539 25 + TSS region transcription start site region 7302
Tssr7303 1 72346256 to 72346270 14 + TSS region transcription start site region 7303
Tssr7304 1 72383350 to 72383367 17 + TSS region transcription start site region 7304
Gm39661 1 72413065 to 72421263 8198 + lncRNA gene predicted gene, 39661
March4 1 72427112 to 72536587 109475 - protein coding gene membrane-associated ring finger (C3HC4) 4
Tssr7305 1 72459458 to 72459463 5 + TSS region transcription start site region 7305
Gm15843 1 72459499 to 72460027 528 + pseudogene predicted gene 15843
Cpgi357 1 72536057 to 72537287 1230 CpG island CpG island 357
Tssr7306 1 72536696 to 72536721 25 + TSS region transcription start site region 7306
Tssr12166 1 72536984 to 72536999 15 - TSS region transcription start site region 12166
Tssr12167 1 72537131 to 72537145 14 - TSS region transcription start site region 12167
Tssr12168 1 72537148 to 72537172 24 - TSS region transcription start site region 12168
Tssr12169 1 72537185 to 72537199 14 - TSS region transcription start site region 12169
Tssr12170 1 72537272 to 72537319 47 - TSS region transcription start site region 12170
Tssr12171 1 72578960 to 72578983 23 - TSS region transcription start site region 12171
Cpgi358 1 72583198 to 72583514 316 CpG island CpG island 358
Tssr7307 1 72583245 to 72583282 37 + TSS region transcription start site region 7307
Smarcal1 1 72583251 to 72633134 49883 + protein coding gene SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1
Tssr7308 1 72583293 to 72583300 7 + TSS region transcription start site region 7308
Cpgi359 1 72640689 to 72641400 711 CpG island CpG island 359
Gm39662 1 72641188 to 72642963 1775 + antisense lncRNA gene predicted gene, 39662
Ankar 1 72642980 to 72700564 57584 - protein coding gene ankyrin and armadillo repeat containing
D1Mit1009 1 72671495 to 72671694 199 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 1009