Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:71649288-72919293

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193 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fn1 1 71585520 to 71653200 67680 - protein coding gene fibronectin 1
Tssr12145 1 71649289 to 71649313 24 - TSS region transcription start site region 12145
Tssr12146 1 71650590 to 71650616 26 - TSS region transcription start site region 12146
Tssr7280 1 71651575 to 71651604 29 + TSS region transcription start site region 7280
Tssr12147 1 71652176 to 71652179 3 - TSS region transcription start site region 12147
Cpgi349 1 71652581 to 71653546 965 CpG island CpG island 349
Tssr12148 1 71653162 to 71653181 19 - TSS region transcription start site region 12148
Apol7d 1 71653335 to 71662843 9508 + antisense lncRNA gene apolipoprotein L 7d
Gm19003 1 71664769 to 71665906 1137 + pseudogene predicted gene, 19003
Gm46094 1 71672698 to 71712078 39380 + lncRNA gene predicted gene, 46094
D1Mit179 1 71673912 to 71674045 133 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 179
D1Mit127 1 71704330 to 71704462 132 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 127
Gm5829 1 71709705 to 71710055 350 - pseudogene predicted gene 5829
Gm5256 1 71714048 to 71714924 876 - pseudogene predicted gene 5256
Tssr7281 1 71714139 to 71714140 1 + TSS region transcription start site region 7281
Tssr7282 1 71714152 to 71714162 10 + TSS region transcription start site region 7282
Tssr7283 1 71714165 to 71714173 8 + TSS region transcription start site region 7283
Gm39660 1 71728539 to 71741345 12806 - lncRNA gene predicted gene, 39660
Gm30160 1 71728540 to 71749807 21267 + lncRNA gene predicted gene, 30160
Tssr12149 1 71731046 to 71731049 3 - TSS region transcription start site region 12149
Tssr7284 1 71733539 to 71733559 20 + TSS region transcription start site region 7284
Tssr12150 1 71741325 to 71741330 5 - TSS region transcription start site region 12150
D1Mit130 1 71760111 to 71760247 136 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 130
Gm30308 1 71813563 to 71814507 944 + lncRNA gene predicted gene, 30308
Gm45958 1 71823324 to 71835845 12521 + lncRNA gene predicted gene, 45958
Gm37217 1 71843090 to 71846610 3520 - unclassified gene predicted gene, 37217
Tssr7285 1 71887916 to 71887928 12 + TSS region transcription start site region 7285
Tssr7286 1 71887974 to 71888003 29 + TSS region transcription start site region 7286
Tssr7287 1 71888055 to 71888067 12 + TSS region transcription start site region 7287
Tssr7288 1 71888076 to 71888121 45 + TSS region transcription start site region 7288
Gm8883 1 71888112 to 71891204 3092 + lincRNA gene predicted gene 8883
Tssr7289 1 71888474 to 71888491 17 + TSS region transcription start site region 7289
Gm28818 1 71894415 to 71899295 4880 - lincRNA gene predicted gene 28818
Tssr12151 1 71896445 to 71896452 7 - TSS region transcription start site region 12151
Tssr7290 1 71913515 to 71913521 6 + TSS region transcription start site region 7290
Tssr12152 1 71938615 to 71938619 4 - TSS region transcription start site region 12152
4933417E11Rik 1 71958998 to 72005195 46197 - lincRNA gene RIKEN cDNA 4933417E11 gene
4930556G22Rik 1 71983681 to 72038731 55050 - lincRNA gene RIKEN cDNA 4930556G22 gene
Gm5528 1 72004288 to 72004767 479 + pseudogene predicted gene 5528
Tssr7291 1 72074380 to 72074400 20 + TSS region transcription start site region 7291
Tssr7292 1 72087816 to 72087820 4 + TSS region transcription start site region 7292
Gm8885 1 72087857 to 72088454 597 + pseudogene predicted gene 8885
Gm4319 1 72107155 to 72122001 14846 - lincRNA gene predicted gene 4319
Tssr12153 1 72146898 to 72146908 10 - TSS region transcription start site region 12153
Tssr12154 1 72146915 to 72146931 16 - TSS region transcription start site region 12154
Mreg 1 72159442 to 72212307 52865 - protein coding gene melanoregulin
Tssr12155 1 72186503 to 72186507 4 - TSS region transcription start site region 12155
Tssr12156 1 72201318 to 72201322 4 - TSS region transcription start site region 12156
Cpgi350 1 72211615 to 72212481 866 CpG island CpG island 350
Tssr12157 1 72212249 to 72212267 18 - TSS region transcription start site region 12157
Tssr12158 1 72212310 to 72212318 8 - TSS region transcription start site region 12158
Tssr12159 1 72216867 to 72216877 10 - TSS region transcription start site region 12159
Tssr7293 1 72221751 to 72221774 23 + TSS region transcription start site region 7293
Cpgi351 1 72225725 to 72226033 308 CpG island CpG island 351
Gm25360 1 72226240 to 72226430 190 + snRNA gene predicted gene, 25360
Tssr12160 1 72228992 to 72229016 24 - TSS region transcription start site region 12160
D230017M19Rik 1 72236011 to 72272340 36329 + lincRNA gene RIKEN cDNA D230017M19 gene
Cpgi352 1 72236268 to 72236732 464 CpG island CpG island 352
Tssr12161 1 72236346 to 72236391 45 - TSS region transcription start site region 12161
Tssr7294 1 72236445 to 72236493 48 + TSS region transcription start site region 7294
Tssr7295 1 72236499 to 72236524 25 + TSS region transcription start site region 7295
Tssr7296 1 72236601 to 72236611 10 + TSS region transcription start site region 7296
Gm23472 1 72236946 to 72237136 190 + snRNA gene predicted gene, 23472
Tssr7297 1 72237416 to 72237421 5 + TSS region transcription start site region 7297
Tssr12162 1 72242729 to 72242739 10 - TSS region transcription start site region 12162
Cpgi353 1 72243737 to 72244227 490 CpG island CpG island 353
Gm24497 1 72244213 to 72244403 190 + snRNA gene predicted gene, 24497
Cpgi354 1 72254658 to 72254928 270 CpG island CpG island 354
Gm25939 1 72255008 to 72255198 190 + snRNA gene predicted gene, 25939
Tssr12163 1 72255682 to 72255694 12 - TSS region transcription start site region 12163
Pecr 1 72259172 to 72284314 25142 - protein coding gene peroxisomal trans-2-enoyl-CoA reductase
Cpgi355 1 72284036 to 72284493 457 CpG island CpG island 355
Tssr12164 1 72284224 to 72284228 4 - TSS region transcription start site region 12164
Tssr12165 1 72284248 to 72284266 18 - TSS region transcription start site region 12165
Tssr114 1 72284272 to 72284279 7 - TSS region transcription start site region 114
Tssr115 1 72284288 to 72284293 5 - TSS region transcription start site region 115
Tssr116 1 72284305 to 72284313 8 - TSS region transcription start site region 116
Tssr7298 1 72284367 to 72284419 52 + TSS region transcription start site region 7298
Tmem169 1 72284369 to 72303104 18735 + protein coding gene transmembrane protein 169
Cpgi356 1 72307314 to 72307883 569 CpG island CpG island 356
Tssr7299 1 72307413 to 72307450 37 + TSS region transcription start site region 7299
Xrcc5 1 72307421 to 72394952 87531 + protein coding gene X-ray repair complementing defective repair in Chinese hamster cells 5
Tssr7300 1 72307458 to 72307475 17 + TSS region transcription start site region 7300
Tssr7301 1 72307491 to 72307502 11 + TSS region transcription start site region 7301
Tssr7302 1 72307514 to 72307539 25 + TSS region transcription start site region 7302
Tssr7303 1 72346256 to 72346270 14 + TSS region transcription start site region 7303
Tssr7304 1 72383350 to 72383367 17 + TSS region transcription start site region 7304
Gm39661 1 72413065 to 72421263 8198 + lncRNA gene predicted gene, 39661
March4 1 72427112 to 72536587 109475 - protein coding gene membrane-associated ring finger (C3HC4) 4
Tssr7305 1 72459458 to 72459463 5 + TSS region transcription start site region 7305
Gm15843 1 72459499 to 72460027 528 + pseudogene predicted gene 15843
Cpgi357 1 72536057 to 72537287 1230 CpG island CpG island 357
Tssr7306 1 72536696 to 72536721 25 + TSS region transcription start site region 7306
Tssr12166 1 72536984 to 72536999 15 - TSS region transcription start site region 12166
Tssr12167 1 72537131 to 72537145 14 - TSS region transcription start site region 12167
Tssr12168 1 72537148 to 72537172 24 - TSS region transcription start site region 12168
Tssr12169 1 72537185 to 72537199 14 - TSS region transcription start site region 12169
Tssr12170 1 72537272 to 72537319 47 - TSS region transcription start site region 12170
Tssr12171 1 72578960 to 72578983 23 - TSS region transcription start site region 12171
Cpgi358 1 72583198 to 72583514 316 CpG island CpG island 358
Tssr7307 1 72583245 to 72583282 37 + TSS region transcription start site region 7307
Smarcal1 1 72583251 to 72633134 49883 + protein coding gene SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1
Tssr7308 1 72583293 to 72583300 7 + TSS region transcription start site region 7308
Cpgi359 1 72640689 to 72641400 711 CpG island CpG island 359
Gm39662 1 72641188 to 72642963 1775 + antisense lncRNA gene predicted gene, 39662
Ankar 1 72642980 to 72700564 57584 - protein coding gene ankyrin and armadillo repeat containing
D1Mit1009 1 72671495 to 72671694 199 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 1009
Gm18035 1 72692872 to 72693454 582 + pseudogene predicted gene, 18035
Tssr12172 1 72700531 to 72700542 11 - TSS region transcription start site region 12172
Tssr12173 1 72700544 to 72700556 12 - TSS region transcription start site region 12173
Tssr12174 1 72700558 to 72700584 26 - TSS region transcription start site region 12174
Gm45859 1 72706289 to 72706502 213 - pseudogene predicted gene 45859
Cpgi360 1 72710853 to 72711997 1144 CpG island CpG island 360
Tssr7309 1 72711238 to 72711252 14 + TSS region transcription start site region 7309
Tssr7310 1 72711259 to 72711296 37 + TSS region transcription start site region 7310
Rpl37a 1 72711290 to 72713813 2523 + protein coding gene ribosomal protein L37a
Tssr7311 1 72711321 to 72711330 9 + TSS region transcription start site region 7311
Gm39663 1 72726973 to 72737799 10826 - lncRNA gene predicted gene, 39663
Gm30788 1 72744536 to 72770485 25949 - lncRNA gene predicted gene, 30788
Gm30847 1 72768472 to 72821772 53300 + lncRNA gene predicted gene, 30847
Tssr12175 1 72769611 to 72769627 16 - TSS region transcription start site region 12175
Tssr12176 1 72780813 to 72780819 6 - TSS region transcription start site region 12176
Tssr12177 1 72806081 to 72806086 5 - TSS region transcription start site region 12177
Cpgi361 1 72824030 to 72825662 1632 CpG island CpG island 361
Tssr7312 1 72824482 to 72824501 19 + TSS region transcription start site region 7312
Igfbp2 1 72824503 to 72852474 27971 + protein coding gene insulin-like growth factor binding protein 2
Tssr7313 1 72824513 to 72824522 9 + TSS region transcription start site region 7313
Tssr7314 1 72824530 to 72824541 11 + TSS region transcription start site region 7314
Tssr7315 1 72824546 to 72824557 11 + TSS region transcription start site region 7315
Tssr7316 1 72824566 to 72824577 11 + TSS region transcription start site region 7316
Tssr7317 1 72826574 to 72826583 9 + TSS region transcription start site region 7317
Tssr7318 1 72826618 to 72826632 14 + TSS region transcription start site region 7318
Tssr7319 1 72828631 to 72828642 11 + TSS region transcription start site region 7319
Tssr7320 1 72832893 to 72832896 3 + TSS region transcription start site region 7320
Tssr7321 1 72849079 to 72849086 7 + TSS region transcription start site region 7321
Tssr7322 1 72849108 to 72849144 36 + TSS region transcription start site region 7322
Tssr12178 1 72849115 to 72849124 9 - TSS region transcription start site region 12178
Tssr7323 1 72849151 to 72849183 32 + TSS region transcription start site region 7323
Tssr12179 1 72849158 to 72849173 15 - TSS region transcription start site region 12179
Tssr7324 1 72849200 to 72849214 14 + TSS region transcription start site region 7324
Tssr7325 1 72849215 to 72849234 19 + TSS region transcription start site region 7325
Tssr12180 1 72849222 to 72849236 14 - TSS region transcription start site region 12180
Tssr12181 1 72849243 to 72849266 23 - TSS region transcription start site region 12181
Tssr7326 1 72849245 to 72849269 24 + TSS region transcription start site region 7326
Tssr7327 1 72849274 to 72849290 16 + TSS region transcription start site region 7327
Tssr12182 1 72849286 to 72849299 13 - TSS region transcription start site region 12182
Tssr12183 1 72849307 to 72849311 4 - TSS region transcription start site region 12183
Tssr7328 1 72849577 to 72849609 32 + TSS region transcription start site region 7328
Tssr7329 1 72849612 to 72849621 9 + TSS region transcription start site region 7329
Tssr7330 1 72849626 to 72849654 28 + TSS region transcription start site region 7330
Tssr7331 1 72851995 to 72852004 9 + TSS region transcription start site region 7331
Tssr7332 1 72852024 to 72852060 36 + TSS region transcription start site region 7332
Tssr7333 1 72852069 to 72852076 7 + TSS region transcription start site region 7333
Tssr7334 1 72852084 to 72852095 11 + TSS region transcription start site region 7334
Tssr7335 1 72852100 to 72852104 4 + TSS region transcription start site region 7335
Tssr7336 1 72852154 to 72852162 8 + TSS region transcription start site region 7336
Tssr7337 1 72852175 to 72852189 14 + TSS region transcription start site region 7337
Tssr7338 1 72852215 to 72852222 7 + TSS region transcription start site region 7338
Tssr12184 1 72852216 to 72852247 31 - TSS region transcription start site region 12184
Tssr7339 1 72852239 to 72852244 5 + TSS region transcription start site region 7339
Tssr12185 1 72852278 to 72852313 35 - TSS region transcription start site region 12185
Tssr7340 1 72852304 to 72852316 12 + TSS region transcription start site region 7340
Tssr7341 1 72852421 to 72852432 11 + TSS region transcription start site region 7341
Igfbp5 1 72858065 to 72874865 16800 - protein coding gene insulin-like growth factor binding protein 5
Tssr12186 1 72858462 to 72858489 27 - TSS region transcription start site region 12186
Tssr12187 1 72858734 to 72858758 24 - TSS region transcription start site region 12187
Tssr12188 1 72859038 to 72859074 36 - TSS region transcription start site region 12188
Tssr12189 1 72859799 to 72859813 14 - TSS region transcription start site region 12189
Tssr12190 1 72860295 to 72860309 14 - TSS region transcription start site region 12190
Tssr12191 1 72861028 to 72861039 11 - TSS region transcription start site region 12191
Tssr12192 1 72861496 to 72861519 23 - TSS region transcription start site region 12192
Tssr12193 1 72861661 to 72861672 11 - TSS region transcription start site region 12193
Tssr12194 1 72861841 to 72861871 30 - TSS region transcription start site region 12194
Tssr12195 1 72862201 to 72862223 22 - TSS region transcription start site region 12195
Tssr12196 1 72862295 to 72862306 11 - TSS region transcription start site region 12196
Tssr12197 1 72862313 to 72862325 12 - TSS region transcription start site region 12197
Tssr12198 1 72862329 to 72862379 50 - TSS region transcription start site region 12198
Tssr7342 1 72862364 to 72862379 15 + TSS region transcription start site region 7342
Cpgi362 1 72862365 to 72862604 239 CpG island CpG island 362
Tssr12199 1 72863214 to 72863228 14 - TSS region transcription start site region 12199
Tssr7343 1 72863899 to 72863915 16 + TSS region transcription start site region 7343
Cpgi363 1 72870213 to 72870554 341 CpG island CpG island 363
Cpgi364 1 72871737 to 72872172 435 CpG island CpG island 364
Cpgi365 1 72873535 to 72874763 1228 CpG island CpG island 365
Tssr12200 1 72873877 to 72873917 40 - TSS region transcription start site region 12200
Tssr12201 1 72874021 to 72874053 32 - TSS region transcription start site region 12201
Tssr12202 1 72874145 to 72874208 63 - TSS region transcription start site region 12202
Tssr12203 1 72874247 to 72874262 15 - TSS region transcription start site region 12203
Tssr12204 1 72874389 to 72874408 19 - TSS region transcription start site region 12204
Tssr12205 1 72874412 to 72874451 39 - TSS region transcription start site region 12205
Tssr12206 1 72874538 to 72874547 9 - TSS region transcription start site region 12206
Tssr12207 1 72874877 to 72874891 14 - TSS region transcription start site region 12207
D1Mit281 1 72875530 to 72875655 125 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 281