Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:71633615-72243619

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fn1 1 71585520 to 71653200 67680 - protein coding gene fibronectin 1
Tssr12135 1 71637279 to 71637290 11 - TSS region transcription start site region 12135
Tssr12136 1 71637335 to 71637346 11 - TSS region transcription start site region 12136
Tssr12137 1 71638505 to 71638527 22 - TSS region transcription start site region 12137
Tssr12138 1 71638537 to 71638589 52 - TSS region transcription start site region 12138
Tssr12139 1 71640404 to 71640418 14 - TSS region transcription start site region 12139
Tssr12140 1 71641271 to 71641314 43 - TSS region transcription start site region 12140
Tssr12141 1 71642022 to 71642038 16 - TSS region transcription start site region 12141
Tssr12142 1 71642080 to 71642106 26 - TSS region transcription start site region 12142
Tssr7278 1 71642991 to 71643021 30 + TSS region transcription start site region 7278
Tssr12143 1 71643076 to 71643126 50 - TSS region transcription start site region 12143
Tssr12144 1 71648083 to 71648105 22 - TSS region transcription start site region 12144
Tssr7279 1 71649196 to 71649235 39 + TSS region transcription start site region 7279
Tssr12145 1 71649289 to 71649313 24 - TSS region transcription start site region 12145
Tssr12146 1 71650590 to 71650616 26 - TSS region transcription start site region 12146
Tssr7280 1 71651575 to 71651604 29 + TSS region transcription start site region 7280
Tssr12147 1 71652176 to 71652179 3 - TSS region transcription start site region 12147
Cpgi349 1 71652581 to 71653546 965 CpG island CpG island 349
Tssr12148 1 71653162 to 71653181 19 - TSS region transcription start site region 12148
Apol7d 1 71653335 to 71662843 9508 + antisense lncRNA gene apolipoprotein L 7d
Gm19003 1 71664769 to 71665906 1137 + pseudogene predicted gene, 19003
Gm46094 1 71672698 to 71712078 39380 + lncRNA gene predicted gene, 46094
D1Mit179 1 71673912 to 71674045 133 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 179
D1Mit127 1 71704330 to 71704462 132 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 127
Gm5829 1 71709705 to 71710055 350 - pseudogene predicted gene 5829
Gm5256 1 71714048 to 71714924 876 - pseudogene predicted gene 5256
Tssr7281 1 71714139 to 71714140 1 + TSS region transcription start site region 7281
Tssr7282 1 71714152 to 71714162 10 + TSS region transcription start site region 7282
Tssr7283 1 71714165 to 71714173 8 + TSS region transcription start site region 7283
Gm39660 1 71728539 to 71741345 12806 - lncRNA gene predicted gene, 39660
Gm30160 1 71728540 to 71749807 21267 + lncRNA gene predicted gene, 30160
Tssr12149 1 71731046 to 71731049 3 - TSS region transcription start site region 12149
Tssr7284 1 71733539 to 71733559 20 + TSS region transcription start site region 7284
Tssr12150 1 71741325 to 71741330 5 - TSS region transcription start site region 12150
D1Mit130 1 71760111 to 71760247 136 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 130
Gm30308 1 71813563 to 71814507 944 + lncRNA gene predicted gene, 30308
Gm45958 1 71823324 to 71835845 12521 + lncRNA gene predicted gene, 45958
Gm37217 1 71843090 to 71846610 3520 - unclassified gene predicted gene, 37217
Tssr7285 1 71887916 to 71887928 12 + TSS region transcription start site region 7285
Tssr7286 1 71887974 to 71888003 29 + TSS region transcription start site region 7286
Tssr7287 1 71888055 to 71888067 12 + TSS region transcription start site region 7287
Tssr7288 1 71888076 to 71888121 45 + TSS region transcription start site region 7288
Gm8883 1 71888112 to 71891204 3092 + lincRNA gene predicted gene 8883
Tssr7289 1 71888474 to 71888491 17 + TSS region transcription start site region 7289
Gm28818 1 71894415 to 71899295 4880 - lincRNA gene predicted gene 28818
Tssr12151 1 71896445 to 71896452 7 - TSS region transcription start site region 12151
Tssr7290 1 71913515 to 71913521 6 + TSS region transcription start site region 7290
Tssr12152 1 71938615 to 71938619 4 - TSS region transcription start site region 12152
4933417E11Rik 1 71958998 to 72005195 46197 - lincRNA gene RIKEN cDNA 4933417E11 gene
4930556G22Rik 1 71983681 to 72038731 55050 - lincRNA gene RIKEN cDNA 4930556G22 gene
Gm5528 1 72004288 to 72004767 479 + pseudogene predicted gene 5528
Tssr7291 1 72074380 to 72074400 20 + TSS region transcription start site region 7291
Tssr7292 1 72087816 to 72087820 4 + TSS region transcription start site region 7292
Gm8885 1 72087857 to 72088454 597 + pseudogene predicted gene 8885
Gm4319 1 72107155 to 72122001 14846 - lincRNA gene predicted gene 4319
Tssr12153 1 72146898 to 72146908 10 - TSS region transcription start site region 12153
Tssr12154 1 72146915 to 72146931 16 - TSS region transcription start site region 12154
Mreg 1 72159442 to 72212307 52865 - protein coding gene melanoregulin
Tssr12155 1 72186503 to 72186507 4 - TSS region transcription start site region 12155
Tssr12156 1 72201318 to 72201322 4 - TSS region transcription start site region 12156
Cpgi350 1 72211615 to 72212481 866 CpG island CpG island 350
Tssr12157 1 72212249 to 72212267 18 - TSS region transcription start site region 12157
Tssr12158 1 72212310 to 72212318 8 - TSS region transcription start site region 12158
Tssr12159 1 72216867 to 72216877 10 - TSS region transcription start site region 12159
Tssr7293 1 72221751 to 72221774 23 + TSS region transcription start site region 7293
Cpgi351 1 72225725 to 72226033 308 CpG island CpG island 351
Gm25360 1 72226240 to 72226430 190 + snRNA gene predicted gene, 25360
Tssr12160 1 72228992 to 72229016 24 - TSS region transcription start site region 12160
D230017M19Rik 1 72236011 to 72272340 36329 + lincRNA gene RIKEN cDNA D230017M19 gene
Cpgi352 1 72236268 to 72236732 464 CpG island CpG island 352
Tssr12161 1 72236346 to 72236391 45 - TSS region transcription start site region 12161
Tssr7294 1 72236445 to 72236493 48 + TSS region transcription start site region 7294
Tssr7295 1 72236499 to 72236524 25 + TSS region transcription start site region 7295
Tssr7296 1 72236601 to 72236611 10 + TSS region transcription start site region 7296
Gm23472 1 72236946 to 72237136 190 + snRNA gene predicted gene, 23472
Tssr7297 1 72237416 to 72237421 5 + TSS region transcription start site region 7297
Tssr12162 1 72242729 to 72242739 10 - TSS region transcription start site region 12162