Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:70540812-72640839

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196 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spag16 1 69826970 to 70725132 898162 + protein coding gene sperm associated antigen 16
Tssr113 1 70543193 to 70543195 2 + TSS region transcription start site region 113
Tssr7268 1 70568954 to 70568956 2 + TSS region transcription start site region 7268
Gm37456 1 70571435 to 70577271 5836 - unclassified gene predicted gene, 37456
D1Mit304 1 70592518 to 70592653 135 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 304
Gm23422 1 70596815 to 70596921 106 + snRNA gene predicted gene, 23422
Cpgi345 1 70725637 to 70725864 227 CpG island CpG island 345
Vwc2l 1 70725715 to 70885397 159682 + protein coding gene von Willebrand factor C domain-containing protein 2-like
Tssr7269 1 70725814 to 70725830 16 + TSS region transcription start site region 7269
Tssr7270 1 70725921 to 70725927 6 + TSS region transcription start site region 7270
Cpgi346 1 70839688 to 70839947 259 CpG island CpG island 346
Gm29906 1 70851015 to 70918626 67611 - lncRNA gene predicted gene, 29906
Gm8859 1 70906748 to 70908067 1319 + pseudogene predicted gene 8859
D1Mit78 1 70946366 to 70946564 198 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 78
Bard1 1 71027531 to 71103156 75625 - protein coding gene BRCA1 associated RING domain 1
Tssr12086 1 71028603 to 71028614 11 - TSS region transcription start site region 12086
Tssr12087 1 71028621 to 71028635 14 - TSS region transcription start site region 12087
Tssr12088 1 71029957 to 71029997 40 - TSS region transcription start site region 12088
Tssr12089 1 71030184 to 71030187 3 - TSS region transcription start site region 12089
Gm16236 1 71039652 to 71040030 378 - pseudogene predicted gene 16236
Tssr12090 1 71048116 to 71048120 4 - TSS region transcription start site region 12090
Tssr12091 1 71068967 to 71068975 8 - TSS region transcription start site region 12091
Tssr12092 1 71101969 to 71101973 4 - TSS region transcription start site region 12092
Cpgi347 1 71102239 to 71103239 1000 CpG island CpG island 347
Tssr12093 1 71102901 to 71102979 78 - TSS region transcription start site region 12093
Gm8870 1 71155246 to 71156020 774 - pseudogene predicted gene 8870
Abca12 1 71243090 to 71414910 171820 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 12
Tssr12094 1 71307507 to 71307516 9 - TSS region transcription start site region 12094
Gm39659 1 71327290 to 71329244 1954 + lncRNA gene predicted gene, 39659
Tssr7271 1 71327300 to 71327317 17 + TSS region transcription start site region 7271
Tssr12095 1 71414803 to 71414815 12 - TSS region transcription start site region 12095
Tssr12096 1 71414818 to 71414829 11 - TSS region transcription start site region 12096
Tssr12097 1 71414840 to 71414872 32 - TSS region transcription start site region 12097
Tssr12098 1 71414881 to 71414915 34 - TSS region transcription start site region 12098
Tssr12099 1 71414922 to 71414927 5 - TSS region transcription start site region 12099
Tssr12100 1 71414930 to 71414941 11 - TSS region transcription start site region 12100
Gm6947 1 71493737 to 71493814 77 - pseudogene predicted gene 6947
Cpgi348 1 71556888 to 71557662 774 CpG island CpG island 348
Tssr7272 1 71557149 to 71557152 3 + TSS region transcription start site region 7272
Tssr7273 1 71557155 to 71557166 11 + TSS region transcription start site region 7273
Atic 1 71557156 to 71579403 22247 + protein coding gene 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase
Tssr7274 1 71557168 to 71557240 72 + TSS region transcription start site region 7274
Tssr7275 1 71564478 to 71564491 13 + TSS region transcription start site region 7275
Tssr7276 1 71578691 to 71578702 11 + TSS region transcription start site region 7276
Fn1 1 71585520 to 71653200 67680 - protein coding gene fibronectin 1
Mol2 1 71585520 to 78206507 6620987 QTL modifier of LPS-response 2
Tssr12101 1 71585558 to 71585590 32 - TSS region transcription start site region 12101
Tssr12102 1 71586224 to 71586233 9 - TSS region transcription start site region 12102
Tssr12103 1 71586926 to 71586946 20 - TSS region transcription start site region 12103
Tssr12104 1 71590812 to 71590839 27 - TSS region transcription start site region 12104
Tssr12105 1 71593121 to 71593137 16 - TSS region transcription start site region 12105
Tssr12106 1 71593138 to 71593159 21 - TSS region transcription start site region 12106
Tssr12107 1 71595724 to 71595754 30 - TSS region transcription start site region 12107
Tssr12108 1 71597437 to 71597451 14 - TSS region transcription start site region 12108
Tssr12109 1 71600337 to 71600367 30 - TSS region transcription start site region 12109
Tssr12110 1 71600415 to 71600457 42 - TSS region transcription start site region 12110
Tssr12111 1 71601242 to 71601294 52 - TSS region transcription start site region 12111
Tssr12112 1 71602381 to 71602402 21 - TSS region transcription start site region 12112
Tssr12113 1 71603841 to 71603853 12 - TSS region transcription start site region 12113
Tssr12114 1 71605964 to 71605986 22 - TSS region transcription start site region 12114
Tssr12115 1 71606783 to 71606801 18 - TSS region transcription start site region 12115
Tssr12116 1 71606816 to 71606850 34 - TSS region transcription start site region 12116
Tssr12117 1 71606857 to 71606873 16 - TSS region transcription start site region 12117
Tssr12118 1 71607978 to 71608001 23 - TSS region transcription start site region 12118
Tssr12119 1 71609503 to 71609548 45 - TSS region transcription start site region 12119
Tssr12120 1 71612501 to 71612525 24 - TSS region transcription start site region 12120
Tssr12121 1 71612557 to 71612605 48 - TSS region transcription start site region 12121
Tssr7277 1 71615492 to 71615527 35 + TSS region transcription start site region 7277
Tssr12122 1 71618625 to 71618638 13 - TSS region transcription start site region 12122
Tssr12123 1 71619477 to 71619497 20 - TSS region transcription start site region 12123
Tssr12124 1 71624144 to 71624160 16 - TSS region transcription start site region 12124
Tssr12125 1 71626039 to 71626064 25 - TSS region transcription start site region 12125
Tssr12126 1 71626230 to 71626251 21 - TSS region transcription start site region 12126
Tssr12127 1 71627279 to 71627333 54 - TSS region transcription start site region 12127
Tssr12128 1 71627347 to 71627362 15 - TSS region transcription start site region 12128
Tssr12129 1 71628101 to 71628130 29 - TSS region transcription start site region 12129
Tssr12130 1 71628439 to 71628452 13 - TSS region transcription start site region 12130
Tssr12131 1 71628470 to 71628491 21 - TSS region transcription start site region 12131
Tssr12132 1 71629384 to 71629416 32 - TSS region transcription start site region 12132
Tssr12133 1 71632076 to 71632095 19 - TSS region transcription start site region 12133
Tssr12134 1 71632105 to 71632145 40 - TSS region transcription start site region 12134
Tssr12135 1 71637279 to 71637290 11 - TSS region transcription start site region 12135
Tssr12136 1 71637335 to 71637346 11 - TSS region transcription start site region 12136
Tssr12137 1 71638505 to 71638527 22 - TSS region transcription start site region 12137
Tssr12138 1 71638537 to 71638589 52 - TSS region transcription start site region 12138
Tssr12139 1 71640404 to 71640418 14 - TSS region transcription start site region 12139
Tssr12140 1 71641271 to 71641314 43 - TSS region transcription start site region 12140
Tssr12141 1 71642022 to 71642038 16 - TSS region transcription start site region 12141
Tssr12142 1 71642080 to 71642106 26 - TSS region transcription start site region 12142
Tssr7278 1 71642991 to 71643021 30 + TSS region transcription start site region 7278
Tssr12143 1 71643076 to 71643126 50 - TSS region transcription start site region 12143
Tssr12144 1 71648083 to 71648105 22 - TSS region transcription start site region 12144
Tssr7279 1 71649196 to 71649235 39 + TSS region transcription start site region 7279
Tssr12145 1 71649289 to 71649313 24 - TSS region transcription start site region 12145
Tssr12146 1 71650590 to 71650616 26 - TSS region transcription start site region 12146
Tssr7280 1 71651575 to 71651604 29 + TSS region transcription start site region 7280
Tssr12147 1 71652176 to 71652179 3 - TSS region transcription start site region 12147
Cpgi349 1 71652581 to 71653546 965 CpG island CpG island 349
Tssr12148 1 71653162 to 71653181 19 - TSS region transcription start site region 12148
Apol7d 1 71653335 to 71662843 9508 + antisense lncRNA gene apolipoprotein L 7d
Gm19003 1 71664769 to 71665906 1137 + pseudogene predicted gene, 19003
Gm46094 1 71672698 to 71712078 39380 + lncRNA gene predicted gene, 46094
D1Mit179 1 71673912 to 71674045 133 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 179
D1Mit127 1 71704330 to 71704462 132 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 127
Gm5829 1 71709705 to 71710055 350 - pseudogene predicted gene 5829
Gm5256 1 71714048 to 71714924 876 - pseudogene predicted gene 5256
Tssr7281 1 71714139 to 71714140 1 + TSS region transcription start site region 7281
Tssr7282 1 71714152 to 71714162 10 + TSS region transcription start site region 7282
Tssr7283 1 71714165 to 71714173 8 + TSS region transcription start site region 7283
Gm39660 1 71728539 to 71741345 12806 - lncRNA gene predicted gene, 39660
Gm30160 1 71728540 to 71749807 21267 + lncRNA gene predicted gene, 30160
Tssr12149 1 71731046 to 71731049 3 - TSS region transcription start site region 12149
Tssr7284 1 71733539 to 71733559 20 + TSS region transcription start site region 7284
Tssr12150 1 71741325 to 71741330 5 - TSS region transcription start site region 12150
D1Mit130 1 71760111 to 71760247 136 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 130
Gm30308 1 71813563 to 71814507 944 + lncRNA gene predicted gene, 30308
Gm45958 1 71823324 to 71835845 12521 + lncRNA gene predicted gene, 45958
Gm37217 1 71843090 to 71846610 3520 - unclassified gene predicted gene, 37217
Tssr7285 1 71887916 to 71887928 12 + TSS region transcription start site region 7285
Tssr7286 1 71887974 to 71888003 29 + TSS region transcription start site region 7286
Tssr7287 1 71888055 to 71888067 12 + TSS region transcription start site region 7287
Tssr7288 1 71888076 to 71888121 45 + TSS region transcription start site region 7288
Gm8883 1 71888112 to 71891204 3092 + lincRNA gene predicted gene 8883
Tssr7289 1 71888474 to 71888491 17 + TSS region transcription start site region 7289
Gm28818 1 71894415 to 71899295 4880 - lincRNA gene predicted gene 28818
Tssr12151 1 71896445 to 71896452 7 - TSS region transcription start site region 12151
Tssr7290 1 71913515 to 71913521 6 + TSS region transcription start site region 7290
Tssr12152 1 71938615 to 71938619 4 - TSS region transcription start site region 12152
4933417E11Rik 1 71958998 to 72005195 46197 - lincRNA gene RIKEN cDNA 4933417E11 gene
4930556G22Rik 1 71983681 to 72038731 55050 - lincRNA gene RIKEN cDNA 4930556G22 gene
Gm5528 1 72004288 to 72004767 479 + pseudogene predicted gene 5528
Tssr7291 1 72074380 to 72074400 20 + TSS region transcription start site region 7291
Tssr7292 1 72087816 to 72087820 4 + TSS region transcription start site region 7292
Gm8885 1 72087857 to 72088454 597 + pseudogene predicted gene 8885
Gm4319 1 72107155 to 72122001 14846 - lincRNA gene predicted gene 4319
Tssr12153 1 72146898 to 72146908 10 - TSS region transcription start site region 12153
Tssr12154 1 72146915 to 72146931 16 - TSS region transcription start site region 12154
Mreg 1 72159442 to 72212307 52865 - protein coding gene melanoregulin
Tssr12155 1 72186503 to 72186507 4 - TSS region transcription start site region 12155
Tssr12156 1 72201318 to 72201322 4 - TSS region transcription start site region 12156
Cpgi350 1 72211615 to 72212481 866 CpG island CpG island 350
Tssr12157 1 72212249 to 72212267 18 - TSS region transcription start site region 12157
Tssr12158 1 72212310 to 72212318 8 - TSS region transcription start site region 12158
Tssr12159 1 72216867 to 72216877 10 - TSS region transcription start site region 12159
Tssr7293 1 72221751 to 72221774 23 + TSS region transcription start site region 7293
Cpgi351 1 72225725 to 72226033 308 CpG island CpG island 351
Gm25360 1 72226240 to 72226430 190 + snRNA gene predicted gene, 25360
Tssr12160 1 72228992 to 72229016 24 - TSS region transcription start site region 12160
D230017M19Rik 1 72236011 to 72272340 36329 + lincRNA gene RIKEN cDNA D230017M19 gene
Cpgi352 1 72236268 to 72236732 464 CpG island CpG island 352
Tssr12161 1 72236346 to 72236391 45 - TSS region transcription start site region 12161
Tssr7294 1 72236445 to 72236493 48 + TSS region transcription start site region 7294
Tssr7295 1 72236499 to 72236524 25 + TSS region transcription start site region 7295
Tssr7296 1 72236601 to 72236611 10 + TSS region transcription start site region 7296
Gm23472 1 72236946 to 72237136 190 + snRNA gene predicted gene, 23472
Tssr7297 1 72237416 to 72237421 5 + TSS region transcription start site region 7297
Tssr12162 1 72242729 to 72242739 10 - TSS region transcription start site region 12162
Cpgi353 1 72243737 to 72244227 490 CpG island CpG island 353
Gm24497 1 72244213 to 72244403 190 + snRNA gene predicted gene, 24497
Cpgi354 1 72254658 to 72254928 270 CpG island CpG island 354
Gm25939 1 72255008 to 72255198 190 + snRNA gene predicted gene, 25939
Tssr12163 1 72255682 to 72255694 12 - TSS region transcription start site region 12163
Pecr 1 72259172 to 72284314 25142 - protein coding gene peroxisomal trans-2-enoyl-CoA reductase
Cpgi355 1 72284036 to 72284493 457 CpG island CpG island 355
Tssr12164 1 72284224 to 72284228 4 - TSS region transcription start site region 12164
Tssr12165 1 72284248 to 72284266 18 - TSS region transcription start site region 12165
Tssr114 1 72284272 to 72284279 7 - TSS region transcription start site region 114
Tssr115 1 72284288 to 72284293 5 - TSS region transcription start site region 115
Tssr116 1 72284305 to 72284313 8 - TSS region transcription start site region 116
Tssr7298 1 72284367 to 72284419 52 + TSS region transcription start site region 7298
Tmem169 1 72284369 to 72303104 18735 + protein coding gene transmembrane protein 169
Cpgi356 1 72307314 to 72307883 569 CpG island CpG island 356
Tssr7299 1 72307413 to 72307450 37 + TSS region transcription start site region 7299
Xrcc5 1 72307421 to 72394952 87531 + protein coding gene X-ray repair complementing defective repair in Chinese hamster cells 5
Tssr7300 1 72307458 to 72307475 17 + TSS region transcription start site region 7300
Tssr7301 1 72307491 to 72307502 11 + TSS region transcription start site region 7301
Tssr7302 1 72307514 to 72307539 25 + TSS region transcription start site region 7302
Tssr7303 1 72346256 to 72346270 14 + TSS region transcription start site region 7303
Tssr7304 1 72383350 to 72383367 17 + TSS region transcription start site region 7304
Gm39661 1 72413065 to 72421263 8198 + lncRNA gene predicted gene, 39661
March4 1 72427112 to 72536587 109475 - protein coding gene membrane-associated ring finger (C3HC4) 4
Tssr7305 1 72459458 to 72459463 5 + TSS region transcription start site region 7305
Gm15843 1 72459499 to 72460027 528 + pseudogene predicted gene 15843
Cpgi357 1 72536057 to 72537287 1230 CpG island CpG island 357
Tssr7306 1 72536696 to 72536721 25 + TSS region transcription start site region 7306
Tssr12166 1 72536984 to 72536999 15 - TSS region transcription start site region 12166
Tssr12167 1 72537131 to 72537145 14 - TSS region transcription start site region 12167
Tssr12168 1 72537148 to 72537172 24 - TSS region transcription start site region 12168
Tssr12169 1 72537185 to 72537199 14 - TSS region transcription start site region 12169
Tssr12170 1 72537272 to 72537319 47 - TSS region transcription start site region 12170
Tssr12171 1 72578960 to 72578983 23 - TSS region transcription start site region 12171
Cpgi358 1 72583198 to 72583514 316 CpG island CpG island 358
Tssr7307 1 72583245 to 72583282 37 + TSS region transcription start site region 7307
Smarcal1 1 72583251 to 72633134 49883 + protein coding gene SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1
Tssr7308 1 72583293 to 72583300 7 + TSS region transcription start site region 7308
Cpgi359 1 72640689 to 72641400 711 CpG island CpG island 359