Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:69471970-71080132

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Shali1 1 51924866 to 70367430 18442564 QTL survival time to hyperoxic acute lung injury 1
Idd5.3 1 66484003 to 70037917 3553914 QTL insulin dependent diabetes susceptibility 5.3
Gm29113 1 69490357 to 69493788 3431 - lincRNA gene predicted gene 29113
Gm29114 1 69513932 to 69547707 33775 + antisense lncRNA gene predicted gene 29114
Ikzf2 1 69531214 to 69687245 156031 - protein coding gene IKAROS family zinc finger 2
Tssr12057 1 69537200 to 69537209 9 - TSS region transcription start site region 12057
Tssr12058 1 69541316 to 69541343 27 - TSS region transcription start site region 12058
Tssr12059 1 69541370 to 69541382 12 - TSS region transcription start site region 12059
Tssr12060 1 69547877 to 69547890 13 - TSS region transcription start site region 12060
Tssr12061 1 69548717 to 69548726 9 - TSS region transcription start site region 12061
Tssr12062 1 69548786 to 69548792 6 - TSS region transcription start site region 12062
Tssr12063 1 69548941 to 69548944 3 - TSS region transcription start site region 12063
Tssr12064 1 69548980 to 69549014 34 - TSS region transcription start site region 12064
Gm29112 1 69595036 to 69598522 3486 - sense intronic lncRNA gene predicted gene 29112
Tssr7256 1 69600557 to 69600559 2 + TSS region transcription start site region 7256
Tssr12065 1 69649444 to 69649449 5 - TSS region transcription start site region 12065
Gm28112 1 69660187 to 69662061 1874 - sense intronic lncRNA gene predicted gene 28112
Tssr12066 1 69662789 to 69662793 4 - TSS region transcription start site region 12066
Tssr12067 1 69667772 to 69667777 5 - TSS region transcription start site region 12067
Tssr12068 1 69681085 to 69681122 37 - TSS region transcription start site region 12068
Tssr7257 1 69681280 to 69681285 5 + TSS region transcription start site region 7257
Tssr7258 1 69681575 to 69681576 1 + TSS region transcription start site region 7258
Tssr12069 1 69683011 to 69683032 21 - TSS region transcription start site region 12069
Tssr12070 1 69683050 to 69683064 14 - TSS region transcription start site region 12070
Tssr12071 1 69683144 to 69683149 5 - TSS region transcription start site region 12071
Tssr12072 1 69683157 to 69683178 21 - TSS region transcription start site region 12072
Tssr12073 1 69683275 to 69683286 11 - TSS region transcription start site region 12073
Tssr12074 1 69683304 to 69683317 13 - TSS region transcription start site region 12074
Tssr12075 1 69683376 to 69683385 9 - TSS region transcription start site region 12075
Tssr12076 1 69684291 to 69684313 22 - TSS region transcription start site region 12076
Tssr110 1 69685760 to 69685771 11 - TSS region transcription start site region 110
Tssr12077 1 69685780 to 69685828 48 - TSS region transcription start site region 12077
Tssr12078 1 69685937 to 69685966 29 - TSS region transcription start site region 12078
Tssr12079 1 69686108 to 69686145 37 - TSS region transcription start site region 12079
Tssr12080 1 69686223 to 69686238 15 - TSS region transcription start site region 12080
Cpgi343 1 69686916 to 69688024 1108 CpG island CpG island 343
Tssr12081 1 69687167 to 69687193 26 - TSS region transcription start site region 12081
Tssr12082 1 69687226 to 69687256 30 - TSS region transcription start site region 12082
Tssr12083 1 69759651 to 69759663 12 - TSS region transcription start site region 12083
Tssr12084 1 69759705 to 69759713 8 - TSS region transcription start site region 12084
Tssr7259 1 69759845 to 69759860 15 + TSS region transcription start site region 7259
Tssr12085 1 69768735 to 69768744 9 - TSS region transcription start site region 12085
Tssr7260 1 69769384 to 69769387 3 + TSS region transcription start site region 7260
Gm37930 1 69770868 to 69772753 1885 + unclassified gene predicted gene, 37930
Gm29822 1 69770874 to 69788525 17651 - lncRNA gene predicted gene, 29822
Cpgi344 1 69826802 to 69827318 516 CpG island CpG island 344
Tssr7261 1 69826865 to 69826915 50 + TSS region transcription start site region 7261
Tssr7262 1 69826957 to 69826984 27 + TSS region transcription start site region 7262
Spag16 1 69826970 to 70725132 898162 + protein coding gene sperm associated antigen 16
Tssr7263 1 69826986 to 69827003 17 + TSS region transcription start site region 7263
Tssr111 1 69871135 to 69871136 1 - TSS region transcription start site region 111
Tssr7264 1 69917063 to 69917070 7 + TSS region transcription start site region 7264
Gm22665 1 69921473 to 69921747 274 - unclassified non-coding RNA gene predicted gene, 22665
Tssr7265 1 69951611 to 69951635 24 + TSS region transcription start site region 7265
Tssr7266 1 69951641 to 69951647 6 + TSS region transcription start site region 7266
Gm23879 1 69955004 to 69955129 125 - snRNA gene predicted gene, 23879
Gm28580 1 70067968 to 70068055 87 - pseudogene predicted gene 28580
D1Mit330 1 70135368 to 70135469 101 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 330
Tssr7267 1 70217302 to 70217305 3 + TSS region transcription start site region 7267
Tssr112 1 70220747 to 70220751 4 + TSS region transcription start site region 112
D1Mit381a 1 70257938 to 70258149 211 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 381a
D1Mit381b 1 70258026 to 70258149 123 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 381b
Gm38272 1 70310512 to 70312911 2399 - unclassified gene predicted gene, 38272
dde 1 70367239 to 76794683 6427444 heritable phenotypic marker disproportionate dwarf and eye defect
D1Mit251 1 70367239 to 70367430 191 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 251
D1Mit250 1 70469213 to 70469361 148 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 250
D1Mit481 1 70516467 to 70516584 117 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 481
Gm17972 1 70535545 to 70536179 634 + pseudogene predicted gene, 17972
Tssr113 1 70543193 to 70543195 2 + TSS region transcription start site region 113
Tssr7268 1 70568954 to 70568956 2 + TSS region transcription start site region 7268
Gm37456 1 70571435 to 70577271 5836 - unclassified gene predicted gene, 37456
D1Mit304 1 70592518 to 70592653 135 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 304
Gm23422 1 70596815 to 70596921 106 + snRNA gene predicted gene, 23422
Cpgi345 1 70725637 to 70725864 227 CpG island CpG island 345
Vwc2l 1 70725715 to 70885397 159682 + protein coding gene von Willebrand factor C domain-containing protein 2-like
Tssr7269 1 70725814 to 70725830 16 + TSS region transcription start site region 7269
Tssr7270 1 70725921 to 70725927 6 + TSS region transcription start site region 7270
Cpgi346 1 70839688 to 70839947 259 CpG island CpG island 346
Gm29906 1 70851015 to 70918626 67611 - lncRNA gene predicted gene, 29906
Gm8859 1 70906748 to 70908067 1319 + pseudogene predicted gene 8859
D1Mit78 1 70946366 to 70946564 198 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 78
Bard1 1 71027531 to 71103156 75625 - protein coding gene BRCA1 associated RING domain 1
Tssr12086 1 71028603 to 71028614 11 - TSS region transcription start site region 12086
Tssr12087 1 71028621 to 71028635 14 - TSS region transcription start site region 12087
Tssr12088 1 71029957 to 71029997 40 - TSS region transcription start site region 12088
Tssr12089 1 71030184 to 71030187 3 - TSS region transcription start site region 12089
Gm16236 1 71039652 to 71040030 378 - pseudogene predicted gene 16236
Tssr12090 1 71048116 to 71048120 4 - TSS region transcription start site region 12090
Tssr12091 1 71068967 to 71068975 8 - TSS region transcription start site region 12091