Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:68692335-74582346

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694 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
W3q13 1 23070510 to 73937756 50867246 QTL weight 3 weeks QTL 13
Lgq5 1 34721057 to 73937756 39216699 QTL late growth QTL 5
W6q14 1 34721057 to 73937756 39216699 QTL weight 6 weeks QTL 14
Lvrq3 1 34721057 to 73937756 39216699 QTL liver weight QTL 3
W10q6 1 34721057 to 73937756 39216699 QTL weight 10 weeks QTL 6
W3q12 1 34721057 to 73937756 39216699 QTL weight 3 weeks QTL 12
Estoq4 1 34721057 to 73937756 39216699 QTL embryo survival total QTL 4
Lrnx11 1 39093727 to 74477206 35383479 QTL learning-contextual 11
Eae30 1 45378613 to 72935898 27557285 QTL experimental allergic encephalomyelitis susceptibility 30
Shali1 1 51924866 to 70367430 18442564 QTL survival time to hyperoxic acute lung injury 1
Idd5.3 1 66484003 to 70037917 3553914 QTL insulin dependent diabetes susceptibility 5.3
Erbb4 1 68032186 to 69108059 1075873 - protein coding gene erb-b2 receptor tyrosine kinase 4
Gm37769 1 68711037 to 68713405 2368 - unclassified gene predicted gene, 37769
D1Mit178 1 68723089 to 68723270 181 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 178
Gm37061 1 68758485 to 68761727 3242 - unclassified gene predicted gene, 37061
Tssr12043 1 68766570 to 68766572 2 - TSS region transcription start site region 12043
Tssr12044 1 68780833 to 68780834 1 - TSS region transcription start site region 12044
Tssr12045 1 68910902 to 68910905 3 - TSS region transcription start site region 12045
Tssr12046 1 68938640 to 68938645 5 - TSS region transcription start site region 12046
Tssr12047 1 68966690 to 68966726 36 - TSS region transcription start site region 12047
Tssr12048 1 68978720 to 68978724 4 - TSS region transcription start site region 12048
C530042K13Rik 1 68998386 to 69000268 1882 unclassified gene RIKEN cDNA C530042K13 gene
Tssr12049 1 69041917 to 69041921 4 - TSS region transcription start site region 12049
Gm16076 1 69091913 to 69106740 14827 - sense intronic lncRNA gene predicted gene 16076
Tssr12050 1 69097005 to 69097006 1 - TSS region transcription start site region 12050
Tssr12051 1 69103176 to 69103180 4 - TSS region transcription start site region 12051
Cpgi341 1 69106096 to 69108381 2285 CpG island CpG island 341
Tssr12052 1 69108039 to 69108064 25 - TSS region transcription start site region 12052
Tssr12053 1 69108258 to 69108275 17 - TSS region transcription start site region 12053
Tssr12054 1 69108418 to 69108460 42 - TSS region transcription start site region 12054
Tssr12055 1 69108535 to 69108577 42 - TSS region transcription start site region 12055
Gm8840 1 69130914 to 69131299 385 - pseudogene predicted gene 8840
Tssr12056 1 69131331 to 69131338 7 - TSS region transcription start site region 12056
Cpgi342 1 69376935 to 69378353 1418 CpG island CpG island 342
Pced1c-ps 1 69377321 to 69378071 750 + pseudogene PC-esterase domain containing 1C, pseudogene
Gm28497 1 69441056 to 69444084 3028 + lincRNA gene predicted gene 28497
Gm29113 1 69490357 to 69493788 3431 - lincRNA gene predicted gene 29113
Gm29114 1 69513932 to 69547707 33775 + antisense lncRNA gene predicted gene 29114
Ikzf2 1 69531214 to 69687245 156031 - protein coding gene IKAROS family zinc finger 2
Tssr12057 1 69537200 to 69537209 9 - TSS region transcription start site region 12057
Tssr12058 1 69541316 to 69541343 27 - TSS region transcription start site region 12058
Tssr12059 1 69541370 to 69541382 12 - TSS region transcription start site region 12059
Tssr12060 1 69547877 to 69547890 13 - TSS region transcription start site region 12060
Tssr12061 1 69548717 to 69548726 9 - TSS region transcription start site region 12061
Tssr12062 1 69548786 to 69548792 6 - TSS region transcription start site region 12062
Tssr12063 1 69548941 to 69548944 3 - TSS region transcription start site region 12063
Tssr12064 1 69548980 to 69549014 34 - TSS region transcription start site region 12064
Gm29112 1 69595036 to 69598522 3486 - sense intronic lncRNA gene predicted gene 29112
Tssr7256 1 69600557 to 69600559 2 + TSS region transcription start site region 7256
Tssr12065 1 69649444 to 69649449 5 - TSS region transcription start site region 12065
Gm28112 1 69660187 to 69662061 1874 - sense intronic lncRNA gene predicted gene 28112
Tssr12066 1 69662789 to 69662793 4 - TSS region transcription start site region 12066
Tssr12067 1 69667772 to 69667777 5 - TSS region transcription start site region 12067
Tssr12068 1 69681085 to 69681122 37 - TSS region transcription start site region 12068
Tssr7257 1 69681280 to 69681285 5 + TSS region transcription start site region 7257
Tssr7258 1 69681575 to 69681576 1 + TSS region transcription start site region 7258
Tssr12069 1 69683011 to 69683032 21 - TSS region transcription start site region 12069
Tssr12070 1 69683050 to 69683064 14 - TSS region transcription start site region 12070
Tssr12071 1 69683144 to 69683149 5 - TSS region transcription start site region 12071
Tssr12072 1 69683157 to 69683178 21 - TSS region transcription start site region 12072
Tssr12073 1 69683275 to 69683286 11 - TSS region transcription start site region 12073
Tssr12074 1 69683304 to 69683317 13 - TSS region transcription start site region 12074
Tssr12075 1 69683376 to 69683385 9 - TSS region transcription start site region 12075
Tssr12076 1 69684291 to 69684313 22 - TSS region transcription start site region 12076
Tssr110 1 69685760 to 69685771 11 - TSS region transcription start site region 110
Tssr12077 1 69685780 to 69685828 48 - TSS region transcription start site region 12077
Tssr12078 1 69685937 to 69685966 29 - TSS region transcription start site region 12078
Tssr12079 1 69686108 to 69686145 37 - TSS region transcription start site region 12079
Tssr12080 1 69686223 to 69686238 15 - TSS region transcription start site region 12080
Cpgi343 1 69686916 to 69688024 1108 CpG island CpG island 343
Tssr12081 1 69687167 to 69687193 26 - TSS region transcription start site region 12081
Tssr12082 1 69687226 to 69687256 30 - TSS region transcription start site region 12082
Tssr12083 1 69759651 to 69759663 12 - TSS region transcription start site region 12083
Tssr12084 1 69759705 to 69759713 8 - TSS region transcription start site region 12084
Tssr7259 1 69759845 to 69759860 15 + TSS region transcription start site region 7259
Tssr12085 1 69768735 to 69768744 9 - TSS region transcription start site region 12085
Tssr7260 1 69769384 to 69769387 3 + TSS region transcription start site region 7260
Gm37930 1 69770868 to 69772753 1885 + unclassified gene predicted gene, 37930
Gm29822 1 69770874 to 69788525 17651 - lncRNA gene predicted gene, 29822
Cpgi344 1 69826802 to 69827318 516 CpG island CpG island 344
Tssr7261 1 69826865 to 69826915 50 + TSS region transcription start site region 7261
Tssr7262 1 69826957 to 69826984 27 + TSS region transcription start site region 7262
Spag16 1 69826970 to 70725132 898162 + protein coding gene sperm associated antigen 16
Tssr7263 1 69826986 to 69827003 17 + TSS region transcription start site region 7263
Tssr111 1 69871135 to 69871136 1 - TSS region transcription start site region 111
Tssr7264 1 69917063 to 69917070 7 + TSS region transcription start site region 7264
Gm22665 1 69921473 to 69921747 274 - unclassified non-coding RNA gene predicted gene, 22665
Tssr7265 1 69951611 to 69951635 24 + TSS region transcription start site region 7265
Tssr7266 1 69951641 to 69951647 6 + TSS region transcription start site region 7266
Gm23879 1 69955004 to 69955129 125 - snRNA gene predicted gene, 23879
Gm28580 1 70067968 to 70068055 87 - pseudogene predicted gene 28580
D1Mit330 1 70135368 to 70135469 101 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 330
Tssr7267 1 70217302 to 70217305 3 + TSS region transcription start site region 7267
Tssr112 1 70220747 to 70220751 4 + TSS region transcription start site region 112
D1Mit381a 1 70257938 to 70258149 211 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 381a
D1Mit381b 1 70258026 to 70258149 123 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 381b
Gm38272 1 70310512 to 70312911 2399 - unclassified gene predicted gene, 38272
D1Mit251 1 70367239 to 70367430 191 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 251
dde 1 70367239 to 76794683 6427444 heritable phenotypic marker disproportionate dwarf and eye defect
D1Mit250 1 70469213 to 70469361 148 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 250
D1Mit481 1 70516467 to 70516584 117 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 481
Gm17972 1 70535545 to 70536179 634 + pseudogene predicted gene, 17972
Tssr113 1 70543193 to 70543195 2 + TSS region transcription start site region 113
Tssr7268 1 70568954 to 70568956 2 + TSS region transcription start site region 7268
Gm37456 1 70571435 to 70577271 5836 - unclassified gene predicted gene, 37456
D1Mit304 1 70592518 to 70592653 135 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 304
Gm23422 1 70596815 to 70596921 106 + snRNA gene predicted gene, 23422
Cpgi345 1 70725637 to 70725864 227 CpG island CpG island 345
Vwc2l 1 70725715 to 70885397 159682 + protein coding gene von Willebrand factor C domain-containing protein 2-like
Tssr7269 1 70725814 to 70725830 16 + TSS region transcription start site region 7269
Tssr7270 1 70725921 to 70725927 6 + TSS region transcription start site region 7270
Cpgi346 1 70839688 to 70839947 259 CpG island CpG island 346
Gm29906 1 70851015 to 70918626 67611 - lncRNA gene predicted gene, 29906
Gm8859 1 70906748 to 70908067 1319 + pseudogene predicted gene 8859
D1Mit78 1 70946366 to 70946564 198 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 78
Bard1 1 71027531 to 71103156 75625 - protein coding gene BRCA1 associated RING domain 1
Tssr12086 1 71028603 to 71028614 11 - TSS region transcription start site region 12086
Tssr12087 1 71028621 to 71028635 14 - TSS region transcription start site region 12087
Tssr12088 1 71029957 to 71029997 40 - TSS region transcription start site region 12088
Tssr12089 1 71030184 to 71030187 3 - TSS region transcription start site region 12089
Gm16236 1 71039652 to 71040030 378 - pseudogene predicted gene 16236
Tssr12090 1 71048116 to 71048120 4 - TSS region transcription start site region 12090
Tssr12091 1 71068967 to 71068975 8 - TSS region transcription start site region 12091
Tssr12092 1 71101969 to 71101973 4 - TSS region transcription start site region 12092
Cpgi347 1 71102239 to 71103239 1000 CpG island CpG island 347
Tssr12093 1 71102901 to 71102979 78 - TSS region transcription start site region 12093
Gm8870 1 71155246 to 71156020 774 - pseudogene predicted gene 8870
Abca12 1 71243090 to 71414910 171820 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 12
Tssr12094 1 71307507 to 71307516 9 - TSS region transcription start site region 12094
Gm39659 1 71327290 to 71329244 1954 + lncRNA gene predicted gene, 39659
Tssr7271 1 71327300 to 71327317 17 + TSS region transcription start site region 7271
Tssr12095 1 71414803 to 71414815 12 - TSS region transcription start site region 12095
Tssr12096 1 71414818 to 71414829 11 - TSS region transcription start site region 12096
Tssr12097 1 71414840 to 71414872 32 - TSS region transcription start site region 12097
Tssr12098 1 71414881 to 71414915 34 - TSS region transcription start site region 12098
Tssr12099 1 71414922 to 71414927 5 - TSS region transcription start site region 12099
Tssr12100 1 71414930 to 71414941 11 - TSS region transcription start site region 12100
Gm6947 1 71493737 to 71493814 77 - pseudogene predicted gene 6947
Cpgi348 1 71556888 to 71557662 774 CpG island CpG island 348
Tssr7272 1 71557149 to 71557152 3 + TSS region transcription start site region 7272
Tssr7273 1 71557155 to 71557166 11 + TSS region transcription start site region 7273
Atic 1 71557156 to 71579403 22247 + protein coding gene 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase
Tssr7274 1 71557168 to 71557240 72 + TSS region transcription start site region 7274
Tssr7275 1 71564478 to 71564491 13 + TSS region transcription start site region 7275
Tssr7276 1 71578691 to 71578702 11 + TSS region transcription start site region 7276
Fn1 1 71585520 to 71653200 67680 - protein coding gene fibronectin 1
Mol2 1 71585520 to 78206507 6620987 QTL modifier of LPS-response 2
Tssr12101 1 71585558 to 71585590 32 - TSS region transcription start site region 12101
Tssr12102 1 71586224 to 71586233 9 - TSS region transcription start site region 12102
Tssr12103 1 71586926 to 71586946 20 - TSS region transcription start site region 12103
Tssr12104 1 71590812 to 71590839 27 - TSS region transcription start site region 12104
Tssr12105 1 71593121 to 71593137 16 - TSS region transcription start site region 12105
Tssr12106 1 71593138 to 71593159 21 - TSS region transcription start site region 12106
Tssr12107 1 71595724 to 71595754 30 - TSS region transcription start site region 12107
Tssr12108 1 71597437 to 71597451 14 - TSS region transcription start site region 12108
Tssr12109 1 71600337 to 71600367 30 - TSS region transcription start site region 12109
Tssr12110 1 71600415 to 71600457 42 - TSS region transcription start site region 12110
Tssr12111 1 71601242 to 71601294 52 - TSS region transcription start site region 12111
Tssr12112 1 71602381 to 71602402 21 - TSS region transcription start site region 12112
Tssr12113 1 71603841 to 71603853 12 - TSS region transcription start site region 12113
Tssr12114 1 71605964 to 71605986 22 - TSS region transcription start site region 12114
Tssr12115 1 71606783 to 71606801 18 - TSS region transcription start site region 12115
Tssr12116 1 71606816 to 71606850 34 - TSS region transcription start site region 12116
Tssr12117 1 71606857 to 71606873 16 - TSS region transcription start site region 12117
Tssr12118 1 71607978 to 71608001 23 - TSS region transcription start site region 12118
Tssr12119 1 71609503 to 71609548 45 - TSS region transcription start site region 12119
Tssr12120 1 71612501 to 71612525 24 - TSS region transcription start site region 12120
Tssr12121 1 71612557 to 71612605 48 - TSS region transcription start site region 12121
Tssr7277 1 71615492 to 71615527 35 + TSS region transcription start site region 7277
Tssr12122 1 71618625 to 71618638 13 - TSS region transcription start site region 12122
Tssr12123 1 71619477 to 71619497 20 - TSS region transcription start site region 12123
Tssr12124 1 71624144 to 71624160 16 - TSS region transcription start site region 12124
Tssr12125 1 71626039 to 71626064 25 - TSS region transcription start site region 12125
Tssr12126 1 71626230 to 71626251 21 - TSS region transcription start site region 12126
Tssr12127 1 71627279 to 71627333 54 - TSS region transcription start site region 12127
Tssr12128 1 71627347 to 71627362 15 - TSS region transcription start site region 12128
Tssr12129 1 71628101 to 71628130 29 - TSS region transcription start site region 12129
Tssr12130 1 71628439 to 71628452 13 - TSS region transcription start site region 12130
Tssr12131 1 71628470 to 71628491 21 - TSS region transcription start site region 12131
Tssr12132 1 71629384 to 71629416 32 - TSS region transcription start site region 12132
Tssr12133 1 71632076 to 71632095 19 - TSS region transcription start site region 12133
Tssr12134 1 71632105 to 71632145 40 - TSS region transcription start site region 12134
Tssr12135 1 71637279 to 71637290 11 - TSS region transcription start site region 12135
Tssr12136 1 71637335 to 71637346 11 - TSS region transcription start site region 12136
Tssr12137 1 71638505 to 71638527 22 - TSS region transcription start site region 12137
Tssr12138 1 71638537 to 71638589 52 - TSS region transcription start site region 12138
Tssr12139 1 71640404 to 71640418 14 - TSS region transcription start site region 12139
Tssr12140 1 71641271 to 71641314 43 - TSS region transcription start site region 12140
Tssr12141 1 71642022 to 71642038 16 - TSS region transcription start site region 12141
Tssr12142 1 71642080 to 71642106 26 - TSS region transcription start site region 12142
Tssr7278 1 71642991 to 71643021 30 + TSS region transcription start site region 7278
Tssr12143 1 71643076 to 71643126 50 - TSS region transcription start site region 12143
Tssr12144 1 71648083 to 71648105 22 - TSS region transcription start site region 12144
Tssr7279 1 71649196 to 71649235 39 + TSS region transcription start site region 7279
Tssr12145 1 71649289 to 71649313 24 - TSS region transcription start site region 12145
Tssr12146 1 71650590 to 71650616 26 - TSS region transcription start site region 12146
Tssr7280 1 71651575 to 71651604 29 + TSS region transcription start site region 7280
Tssr12147 1 71652176 to 71652179 3 - TSS region transcription start site region 12147
Cpgi349 1 71652581 to 71653546 965 CpG island CpG island 349
Tssr12148 1 71653162 to 71653181 19 - TSS region transcription start site region 12148