Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:68038640-69838645

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Erbb4 1 68032186 to 69108059 1075873 - protein coding gene erb-b2 receptor tyrosine kinase 4
Gm37100 1 68115195 to 68116547 1352 - unclassified gene predicted gene, 37100
Tssr12042 1 68184415 to 68184420 5 - TSS region transcription start site region 12042
Gm15670 1 68293280 to 68293726 446 - pseudogene predicted gene 15670
Tgq9 1 68382446 to 68382446 0 QTL triglyceride QTL 9
Gm25542 1 68384942 to 68385035 93 - snRNA gene predicted gene, 25542
Gm19335 1 68591618 to 68593686 2068 - unclassified gene predicted gene, 19335
Gm37735 1 68639424 to 68640829 1405 - unclassified gene predicted gene, 37735
Gm37769 1 68711037 to 68713405 2368 - unclassified gene predicted gene, 37769
D1Mit178 1 68723089 to 68723270 181 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 178
Gm37061 1 68758485 to 68761727 3242 - unclassified gene predicted gene, 37061
Tssr12043 1 68766570 to 68766572 2 - TSS region transcription start site region 12043
Tssr12044 1 68780833 to 68780834 1 - TSS region transcription start site region 12044
Tssr12045 1 68910902 to 68910905 3 - TSS region transcription start site region 12045
Tssr12046 1 68938640 to 68938645 5 - TSS region transcription start site region 12046
Tssr12047 1 68966690 to 68966726 36 - TSS region transcription start site region 12047
Tssr12048 1 68978720 to 68978724 4 - TSS region transcription start site region 12048
C530042K13Rik 1 68998386 to 69000268 1882 unclassified gene RIKEN cDNA C530042K13 gene
Tssr12049 1 69041917 to 69041921 4 - TSS region transcription start site region 12049
Gm16076 1 69091913 to 69106740 14827 - sense intronic lncRNA gene predicted gene 16076
Tssr12050 1 69097005 to 69097006 1 - TSS region transcription start site region 12050
Tssr12051 1 69103176 to 69103180 4 - TSS region transcription start site region 12051
Cpgi341 1 69106096 to 69108381 2285 CpG island CpG island 341
Tssr12052 1 69108039 to 69108064 25 - TSS region transcription start site region 12052
Tssr12053 1 69108258 to 69108275 17 - TSS region transcription start site region 12053
Tssr12054 1 69108418 to 69108460 42 - TSS region transcription start site region 12054
Tssr12055 1 69108535 to 69108577 42 - TSS region transcription start site region 12055
Gm8840 1 69130914 to 69131299 385 - pseudogene predicted gene 8840
Tssr12056 1 69131331 to 69131338 7 - TSS region transcription start site region 12056
Cpgi342 1 69376935 to 69378353 1418 CpG island CpG island 342
Pced1c-ps 1 69377321 to 69378071 750 + pseudogene PC-esterase domain containing 1C, pseudogene
Gm28497 1 69441056 to 69444084 3028 + lincRNA gene predicted gene 28497
Gm29113 1 69490357 to 69493788 3431 - lincRNA gene predicted gene 29113
Gm29114 1 69513932 to 69547707 33775 + antisense lncRNA gene predicted gene 29114
Ikzf2 1 69531214 to 69687245 156031 - protein coding gene IKAROS family zinc finger 2
Tssr12057 1 69537200 to 69537209 9 - TSS region transcription start site region 12057
Tssr12058 1 69541316 to 69541343 27 - TSS region transcription start site region 12058
Tssr12059 1 69541370 to 69541382 12 - TSS region transcription start site region 12059
Tssr12060 1 69547877 to 69547890 13 - TSS region transcription start site region 12060
Tssr12061 1 69548717 to 69548726 9 - TSS region transcription start site region 12061
Tssr12062 1 69548786 to 69548792 6 - TSS region transcription start site region 12062
Tssr12063 1 69548941 to 69548944 3 - TSS region transcription start site region 12063
Tssr12064 1 69548980 to 69549014 34 - TSS region transcription start site region 12064
Gm29112 1 69595036 to 69598522 3486 - sense intronic lncRNA gene predicted gene 29112
Tssr7256 1 69600557 to 69600559 2 + TSS region transcription start site region 7256
Tssr12065 1 69649444 to 69649449 5 - TSS region transcription start site region 12065
Gm28112 1 69660187 to 69662061 1874 - sense intronic lncRNA gene predicted gene 28112
Tssr12066 1 69662789 to 69662793 4 - TSS region transcription start site region 12066
Tssr12067 1 69667772 to 69667777 5 - TSS region transcription start site region 12067
Tssr12068 1 69681085 to 69681122 37 - TSS region transcription start site region 12068
Tssr7257 1 69681280 to 69681285 5 + TSS region transcription start site region 7257
Tssr7258 1 69681575 to 69681576 1 + TSS region transcription start site region 7258
Tssr12069 1 69683011 to 69683032 21 - TSS region transcription start site region 12069
Tssr12070 1 69683050 to 69683064 14 - TSS region transcription start site region 12070
Tssr12071 1 69683144 to 69683149 5 - TSS region transcription start site region 12071
Tssr12072 1 69683157 to 69683178 21 - TSS region transcription start site region 12072
Tssr12073 1 69683275 to 69683286 11 - TSS region transcription start site region 12073
Tssr12074 1 69683304 to 69683317 13 - TSS region transcription start site region 12074
Tssr12075 1 69683376 to 69683385 9 - TSS region transcription start site region 12075
Tssr12076 1 69684291 to 69684313 22 - TSS region transcription start site region 12076
Tssr110 1 69685760 to 69685771 11 - TSS region transcription start site region 110
Tssr12077 1 69685780 to 69685828 48 - TSS region transcription start site region 12077
Tssr12078 1 69685937 to 69685966 29 - TSS region transcription start site region 12078
Tssr12079 1 69686108 to 69686145 37 - TSS region transcription start site region 12079
Tssr12080 1 69686223 to 69686238 15 - TSS region transcription start site region 12080
Cpgi343 1 69686916 to 69688024 1108 CpG island CpG island 343
Tssr12081 1 69687167 to 69687193 26 - TSS region transcription start site region 12081
Tssr12082 1 69687226 to 69687256 30 - TSS region transcription start site region 12082
Tssr12083 1 69759651 to 69759663 12 - TSS region transcription start site region 12083
Tssr12084 1 69759705 to 69759713 8 - TSS region transcription start site region 12084
Tssr7259 1 69759845 to 69759860 15 + TSS region transcription start site region 7259
Tssr12085 1 69768735 to 69768744 9 - TSS region transcription start site region 12085
Tssr7260 1 69769384 to 69769387 3 + TSS region transcription start site region 7260
Gm37930 1 69770868 to 69772753 1885 + unclassified gene predicted gene, 37930
Gm29822 1 69770874 to 69788525 17651 - lncRNA gene predicted gene, 29822
Cpgi344 1 69826802 to 69827318 516 CpG island CpG island 344
Tssr7261 1 69826865 to 69826915 50 + TSS region transcription start site region 7261
Tssr7262 1 69826957 to 69826984 27 + TSS region transcription start site region 7262
Spag16 1 69826970 to 70725132 898162 + protein coding gene sperm associated antigen 16
Tssr7263 1 69826986 to 69827003 17 + TSS region transcription start site region 7263