Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:65252997-66813012

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101 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pikfyve 1 65186683 to 65278695 92012 + protein coding gene phosphoinositide kinase, FYVE type zinc finger containing
D1Mit327 1 65265339 to 65265478 139 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 327
Pth2r 1 65282056 to 65389244 107188 + protein coding gene parathyroid hormone 2 receptor
D1Mit1000 1 65309031 to 65309157 126 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 1000
Cpgi334 1 65311225 to 65311764 539 CpG island CpG island 334
Tssr7127 1 65311453 to 65311457 4 + TSS region transcription start site region 7127
Gm28927 1 65420850 to 65421121 271 - pseudogene predicted gene 28927
Gm28926 1 65421124 to 65421803 679 - pseudogene predicted gene 28926
Gm28925 1 65421770 to 65421937 167 - pseudogene predicted gene 28925
Gm28923 1 65438664 to 65438985 321 - pseudogene predicted gene 28923
Gm28922 1 65470201 to 65470508 307 - pseudogene predicted gene 28922
Gm28728 1 65523671 to 65524075 404 - pseudogene predicted gene 28728
Gm5255 1 65550467 to 65551173 706 - pseudogene predicted gene 5255
Gm8805 1 65552682 to 65552994 312 + pseudogene predicted gene 8805
D1Mit76 1 65849847 to 65850051 204 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 76
Bbaa11 1 65849847 to 65850051 204 QTL B.burgdorferi-associated arthritis 11
Vas1 1 65849847 to 65850051 204 QTL autoimmune vasitis resistance 1
Cia15 1 65849847 to 88568379 22718532 QTL collagen induced arthritis QTL 15
D1Mit156 1 65853186 to 65853326 140 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 156
Cdcs2 1 65853186 to 65853326 140 QTL cytokine deficiency colitis susceptibility 2
Tssr7128 1 65926519 to 65926523 4 + TSS region transcription start site region 7128
Crygf 1 65926522 to 65928304 1782 + protein coding gene crystallin, gamma F
Tssr104 1 65928211 to 65928220 9 + TSS region transcription start site region 104
D1Mit299 1 65964837 to 65964959 122 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 299
Gm8809 1 66032183 to 66032925 742 - pseudogene predicted gene 8809
Tssr7129 1 66032997 to 66033012 15 + TSS region transcription start site region 7129
Gm15659 1 66033085 to 66033425 340 + pseudogene predicted gene 15659
Tssr7130 1 66062743 to 66062747 4 + TSS region transcription start site region 7130
Tssr7131 1 66062806 to 66062856 50 + TSS region transcription start site region 7131
Gm8812 1 66062965 to 66063376 411 + pseudogene predicted gene 8812
Cpgi335 1 66174847 to 66175695 848 CpG island CpG island 335
Tssr7132 1 66175167 to 66175180 13 + TSS region transcription start site region 7132
Tssr7133 1 66175188 to 66175199 11 + TSS region transcription start site region 7133
Tssr7134 1 66175209 to 66175220 11 + TSS region transcription start site region 7134
Tssr7135 1 66175236 to 66175247 11 + TSS region transcription start site region 7135
Tssr7136 1 66175248 to 66175269 21 + TSS region transcription start site region 7136
Tssr7137 1 66175272 to 66175283 11 + TSS region transcription start site region 7137
Map2 1 66175273 to 66442583 267310 + protein coding gene microtubule-associated protein 2
Tssr7138 1 66175286 to 66175348 62 + TSS region transcription start site region 7138
Tssr7139 1 66290099 to 66290102 3 + TSS region transcription start site region 7139
Tssr7140 1 66302096 to 66302103 7 + TSS region transcription start site region 7140
Tssr7141 1 66302113 to 66302127 14 + TSS region transcription start site region 7141
Gm24729 1 66305889 to 66306025 136 + snoRNA gene predicted gene, 24729
Gm18034 1 66313268 to 66313805 537 + pseudogene predicted gene, 18034
Tssr7142 1 66321708 to 66321715 7 + TSS region transcription start site region 7142
Tssr7143 1 66321732 to 66321739 7 + TSS region transcription start site region 7143
Tssr7144 1 66321753 to 66321756 3 + TSS region transcription start site region 7144
Tssr7145 1 66321795 to 66321806 11 + TSS region transcription start site region 7145
Tssr7146 1 66321809 to 66321820 11 + TSS region transcription start site region 7146
Tssr7147 1 66321825 to 66321861 36 + TSS region transcription start site region 7147
Tssr7148 1 66321971 to 66321980 9 + TSS region transcription start site region 7148
Tssr7149 1 66321991 to 66322012 21 + TSS region transcription start site region 7149
Tssr7150 1 66322021 to 66322044 23 + TSS region transcription start site region 7150
Tssr7151 1 66322046 to 66322073 27 + TSS region transcription start site region 7151
Tssr7152 1 66322079 to 66322090 11 + TSS region transcription start site region 7152
Tssr7153 1 66322108 to 66322119 11 + TSS region transcription start site region 7153
Gm10558 1 66322276 to 66328796 6520 - antisense lncRNA gene predicted gene 10558
Tssr7154 1 66323947 to 66323985 38 + TSS region transcription start site region 7154
Tssr11996 1 66349044 to 66349047 3 - TSS region transcription start site region 11996
Tssr7155 1 66364623 to 66364663 40 + TSS region transcription start site region 7155
Tssr7156 1 66364665 to 66364680 15 + TSS region transcription start site region 7156
Tssr7157 1 66386917 to 66386967 50 + TSS region transcription start site region 7157
Tssr7158 1 66386968 to 66386999 31 + TSS region transcription start site region 7158
Tssr7159 1 66412952 to 66412971 19 + TSS region transcription start site region 7159
Tssr7160 1 66413494 to 66413505 11 + TSS region transcription start site region 7160
Tssr7161 1 66421716 to 66421761 45 + TSS region transcription start site region 7161
Gm25411 1 66436082 to 66436232 150 + snRNA gene predicted gene, 25411
Tssr7162 1 66439768 to 66439777 9 + TSS region transcription start site region 7162
Tssr7163 1 66440168 to 66440188 20 + TSS region transcription start site region 7163
Cpgi336 1 66467761 to 66468889 1128 CpG island CpG island 336
Tssr7164 1 66467912 to 66467994 82 + TSS region transcription start site region 7164
Tssr7165 1 66468225 to 66468264 39 + TSS region transcription start site region 7165
Tssr7166 1 66468289 to 66468302 13 + TSS region transcription start site region 7166
Tssr7167 1 66468364 to 66468435 71 + TSS region transcription start site region 7167
Unc80 1 66468367 to 66699148 230781 + protein coding gene unc-80, NALCN activator
Tssr7168 1 66472059 to 66472080 21 + TSS region transcription start site region 7168
Idd5.3 1 66484003 to 70037917 3553914 QTL insulin dependent diabetes susceptibility 5.3
Gm39655 1 66649712 to 66653295 3583 - lncRNA gene predicted gene, 39655
Gm37181 1 66690630 to 66692356 1726 - unclassified gene predicted gene, 37181
Tssr7169 1 66696694 to 66696715 21 + TSS region transcription start site region 7169
A030001O10Rik 1 66696997 to 66699865 2868 unclassified gene RIKEN cDNA A030001O10 gene
Cpgi337 1 66700653 to 66701552 899 CpG island CpG island 337
Rpe 1 66700831 to 66719805 18974 + protein coding gene ribulose-5-phosphate-3-epimerase
Tssr7170 1 66700852 to 66700859 7 + TSS region transcription start site region 7170
Tssr7171 1 66700862 to 66700875 13 + TSS region transcription start site region 7171
Tssr7172 1 66700876 to 66700898 22 + TSS region transcription start site region 7172
Tssr7173 1 66705174 to 66705180 6 + TSS region transcription start site region 7173
Kansl1l 1 66719248 to 66817562 98314 - protein coding gene KAT8 regulatory NSL complex subunit 1-like
Gm46093 1 66738220 to 66762014 23794 + lncRNA gene predicted gene, 46093
2810488O17Rik 1 66757393 to 66758374 981 unclassified gene RIKEN cDNA 2810488O17 gene
Tssr11997 1 66765084 to 66765087 3 - TSS region transcription start site region 11997
Gm37570 1 66765626 to 66768731 3105 - unclassified gene predicted gene, 37570
Tssr11998 1 66765709 to 66765728 19 - TSS region transcription start site region 11998
Gm38387 1 66769290 to 66771866 2576 - unclassified gene predicted gene, 38387
Gm38162 1 66775511 to 66780107 4596 + unclassified gene predicted gene, 38162
Gm39656 1 66779633 to 66793287 13654 + lncRNA gene predicted gene, 39656
Tssr11999 1 66782239 to 66782243 4 - TSS region transcription start site region 11999
Gm15789 1 66783913 to 66786445 2532 + pseudogene predicted gene 15789
6820402A03Rik 1 66793645 to 66796298 2653 - unclassified gene RIKEN cDNA 6820402A03 gene
Gm37285 1 66799659 to 66800797 1138 - unclassified gene predicted gene, 37285
Gm37755 1 66812315 to 66814493 2178 + unclassified gene predicted gene, 37755