Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:64662056-66009244

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159 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
2810408I11Rik 1 64679871 to 64690659 10788 - lncRNA gene RIKEN cDNA 2810408I11 gene
Cpgi327 1 64690211 to 64691697 1486 CpG island CpG island 327
Tssr7096 1 64690366 to 64690371 5 + TSS region transcription start site region 7096
Tssr7097 1 64690443 to 64690467 24 + TSS region transcription start site region 7097
Tssr11926 1 64690578 to 64690587 9 - TSS region transcription start site region 11926
Tssr11927 1 64690618 to 64690638 20 - TSS region transcription start site region 11927
Tssr11928 1 64690650 to 64690666 16 - TSS region transcription start site region 11928
Tssr7098 1 64690791 to 64690803 12 + TSS region transcription start site region 7098
Tssr7099 1 64690867 to 64690872 5 + TSS region transcription start site region 7099
Tssr7100 1 64690913 to 64690933 20 + TSS region transcription start site region 7100
Tssr11929 1 64691036 to 64691068 32 - TSS region transcription start site region 11929
Ccnyl1 1 64691041 to 64725646 34605 + protein coding gene cyclin Y-like 1
Fzd5 1 64730558 to 64737750 7192 - protein coding gene frizzled class receptor 5
Tssr11930 1 64734391 to 64734396 5 - TSS region transcription start site region 11930
Cpgi328 1 64734765 to 64738388 3623 CpG island CpG island 328
Gm38058 1 64736240 to 64740607 4367 + protein coding gene predicted gene, 38058
Tssr11931 1 64737520 to 64737541 21 - TSS region transcription start site region 11931
Tssr11932 1 64737595 to 64737612 17 - TSS region transcription start site region 11932
Tssr11933 1 64737708 to 64737726 18 - TSS region transcription start site region 11933
Tssr11934 1 64737735 to 64737756 21 - TSS region transcription start site region 11934
Plekhm3 1 64789120 to 64956824 167704 - protein coding gene pleckstrin homology domain containing, family M, member 3
Gm18633 1 64799128 to 64800123 995 + pseudogene predicted gene, 18633
Tssr11935 1 64812966 to 64812993 27 - TSS region transcription start site region 11935
Tssr11936 1 64816675 to 64816690 15 - TSS region transcription start site region 11936
D1Mit325 1 64854711 to 64854881 170 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 325
Tssr11937 1 64924943 to 64924950 7 - TSS region transcription start site region 11937
Tssr11938 1 64927499 to 64927540 41 - TSS region transcription start site region 11938
Tssr7101 1 64927712 to 64927723 11 + TSS region transcription start site region 7101
Tssr7102 1 64927726 to 64927743 17 + TSS region transcription start site region 7102
Tssr11939 1 64928061 to 64928066 5 - TSS region transcription start site region 11939
Tssr11940 1 64928076 to 64928096 20 - TSS region transcription start site region 11940
Tssr11941 1 64928112 to 64928115 3 - TSS region transcription start site region 11941
Tssr11942 1 64928642 to 64928646 4 - TSS region transcription start site region 11942
Rpl31-ps24 1 64934401 to 64934779 378 + pseudogene ribosomal protein L31, pseudogene 24
Tssr11943 1 64937808 to 64937821 13 - TSS region transcription start site region 11943
Tssr11944 1 64937824 to 64937836 12 - TSS region transcription start site region 11944
Cpgi329 1 64956425 to 64956887 462 CpG island CpG island 329
Tssr11945 1 64956711 to 64956725 14 - TSS region transcription start site region 11945
Tssr11946 1 64956731 to 64956782 51 - TSS region transcription start site region 11946
Tssr11947 1 64956807 to 64956818 11 - TSS region transcription start site region 11947
Tssr11948 1 64956823 to 64956835 12 - TSS region transcription start site region 11948
Rpl10a-ps1 1 64993951 to 64994604 653 - pseudogene ribosomal protein L10A, pseudogene 1
Tssr7103 1 64994271 to 64994311 40 + TSS region transcription start site region 7103
Tssr11949 1 64994633 to 64994640 7 - TSS region transcription start site region 11949
Gm24788 1 65001307 to 65001462 155 - snRNA gene predicted gene, 24788
Akr1cl 1 65013078 to 65032759 19681 - protein coding gene aldo-keto reductase family 1, member C-like
Tssr11950 1 65018425 to 65018432 7 - TSS region transcription start site region 11950
Tssr7104 1 65028057 to 65028061 4 + TSS region transcription start site region 7104
Gm8550 1 65028080 to 65028732 652 + pseudogene predicted gene 8550
Tssr7105 1 65029828 to 65029841 13 + TSS region transcription start site region 7105
Tssr11951 1 65030330 to 65030333 3 - TSS region transcription start site region 11951
Tssr11952 1 65032738 to 65032754 16 - TSS region transcription start site region 11952
Tssr7106 1 65043785 to 65043789 4 + TSS region transcription start site region 7106
Cryge 1 65048554 to 65051149 2595 - protein coding gene crystallin, gamma E
Tssr7107 1 65048558 to 65048560 2 + TSS region transcription start site region 7107
Tssr11953 1 65048581 to 65048598 17 - TSS region transcription start site region 11953
Tssr11954 1 65048647 to 65048652 5 - TSS region transcription start site region 11954
Tssr99 1 65048848 to 65048858 10 + TSS region transcription start site region 99
Tssr11955 1 65051148 to 65051150 2 - TSS region transcription start site region 11955
Tssr11956 1 65051231 to 65051241 10 - TSS region transcription start site region 11956
Tssr100 1 65061843 to 65061844 1 + TSS region transcription start site region 100
Crygd 1 65061872 to 65063452 1580 - protein coding gene crystallin, gamma D
Tssr11957 1 65061890 to 65061901 11 - TSS region transcription start site region 11957
Tssr11958 1 65061921 to 65061926 5 - TSS region transcription start site region 11958
Tssr7108 1 65061998 to 65062014 16 + TSS region transcription start site region 7108
Tssr11959 1 65062098 to 65062118 20 - TSS region transcription start site region 11959
Tssr11960 1 65062183 to 65062194 11 - TSS region transcription start site region 11960
Tssr11961 1 65063437 to 65063440 3 - TSS region transcription start site region 11961
Crygc 1 65071525 to 65073532 2007 - protein coding gene crystallin, gamma C
Tssr11962 1 65071568 to 65071578 10 - TSS region transcription start site region 11962
Tssr11963 1 65071609 to 65071616 7 - TSS region transcription start site region 11963
Tssr11964 1 65073527 to 65073537 10 - TSS region transcription start site region 11964
Crygb 1 65080222 to 65082290 2068 - protein coding gene crystallin, gamma B
Tssr7109 1 65080228 to 65080246 18 + TSS region transcription start site region 7109
Tssr11965 1 65080253 to 65080260 7 - TSS region transcription start site region 11965
Tssr11966 1 65080276 to 65080287 11 - TSS region transcription start site region 11966
Tssr101 1 65080376 to 65080415 39 + TSS region transcription start site region 101
Tssr7110 1 65080520 to 65080525 5 + TSS region transcription start site region 7110
Tssr7111 1 65080526 to 65080543 17 + TSS region transcription start site region 7111
Tssr11967 1 65082284 to 65082299 15 - TSS region transcription start site region 11967
Gm7329 1 65095227 to 65095436 209 + pseudogene predicted gene 7329
Cryga 1 65100389 to 65103363 2974 - protein coding gene crystallin, gamma A
Tssr7112 1 65100393 to 65100398 5 + TSS region transcription start site region 7112
Tssr11968 1 65100423 to 65100447 24 - TSS region transcription start site region 11968
Tssr11969 1 65100453 to 65100470 17 - TSS region transcription start site region 11969
Tssr7113 1 65100508 to 65100516 8 + TSS region transcription start site region 7113
Tssr7114 1 65100518 to 65100530 12 + TSS region transcription start site region 7114
Tssr7115 1 65100534 to 65100542 8 + TSS region transcription start site region 7115
Tssr7116 1 65100595 to 65100604 9 + TSS region transcription start site region 7116
Gm28845 1 65100619 to 65119558 18939 - protein coding gene predicted gene 28845
Tssr7117 1 65100623 to 65100643 20 + TSS region transcription start site region 7117
Tssr11970 1 65100627 to 65100638 11 - TSS region transcription start site region 11970
Tssr102 1 65100648 to 65100652 4 + TSS region transcription start site region 102
Tssr11971 1 65100650 to 65100662 12 - TSS region transcription start site region 11971
Tssr7118 1 65100653 to 65100696 43 + TSS region transcription start site region 7118
Tssr11972 1 65100672 to 65100683 11 - TSS region transcription start site region 11972
Cpgi330 1 65102948 to 65103274 326 CpG island CpG island 330
Tssr11973 1 65103007 to 65103023 16 - TSS region transcription start site region 11973
Tssr7119 1 65103046 to 65103065 19 + TSS region transcription start site region 7119
Tssr11974 1 65103082 to 65103100 18 - TSS region transcription start site region 11974
Tssr11975 1 65103149 to 65103172 23 - TSS region transcription start site region 11975
Tssr11976 1 65103363 to 65103378 15 - TSS region transcription start site region 11976
D630023F18Rik 1 65105285 to 65123214 17929 - protein coding gene RIKEN cDNA D630023F18 gene
Cpgi331 1 65109817 to 65110165 348 CpG island CpG island 331
Tssr11977 1 65109824 to 65109832 8 - TSS region transcription start site region 11977
Tssr11978 1 65110086 to 65110094 8 - TSS region transcription start site region 11978
Tssr11979 1 65110101 to 65110108 7 - TSS region transcription start site region 11979
Tssr11980 1 65110130 to 65110166 36 - TSS region transcription start site region 11980
Tssr11981 1 65110189 to 65110274 85 - TSS region transcription start site region 11981
Tssr7120 1 65110297 to 65110304 7 + TSS region transcription start site region 7120
Gm36358 1 65110866 to 65119014 8148 + lncRNA gene predicted gene, 36358
Tssr11982 1 65113535 to 65113537 2 - TSS region transcription start site region 11982
Tssr103 1 65122079 to 65122083 4 + TSS region transcription start site region 103
Tssr11983 1 65123097 to 65123104 7 - TSS region transcription start site region 11983
Tssr11984 1 65123108 to 65123193 85 - TSS region transcription start site region 11984
Tssr11985 1 65123308 to 65123321 13 - TSS region transcription start site region 11985
Idh1 1 65158616 to 65186479 27863 - protein coding gene isocitrate dehydrogenase 1 (NADP+), soluble
Tssr11986 1 65159040 to 65159056 16 - TSS region transcription start site region 11986
Tssr11987 1 65159387 to 65159397 10 - TSS region transcription start site region 11987
Tssr11988 1 65161082 to 65161103 21 - TSS region transcription start site region 11988
Tssr11989 1 65175133 to 65175140 7 - TSS region transcription start site region 11989
Cpgi332 1 65178686 to 65179484 798 CpG island CpG island 332
Tssr11990 1 65179044 to 65179055 11 - TSS region transcription start site region 11990
Tssr11991 1 65179058 to 65179121 63 - TSS region transcription start site region 11991
Tssr11992 1 65184114 to 65184118 4 - TSS region transcription start site region 11992
Cpgi333 1 65186247 to 65187147 900 CpG island CpG island 333
Tssr11993 1 65186396 to 65186409 13 - TSS region transcription start site region 11993
Tssr11994 1 65186414 to 65186426 12 - TSS region transcription start site region 11994
Tssr11995 1 65186456 to 65186504 48 - TSS region transcription start site region 11995
Tssr7121 1 65186660 to 65186674 14 + TSS region transcription start site region 7121
Tssr7122 1 65186675 to 65186722 47 + TSS region transcription start site region 7122
Pikfyve 1 65186683 to 65278695 92012 + protein coding gene phosphoinositide kinase, FYVE type zinc finger containing
Tssr7123 1 65186727 to 65186738 11 + TSS region transcription start site region 7123
Tssr7124 1 65230773 to 65230802 29 + TSS region transcription start site region 7124
Tssr7125 1 65247180 to 65247190 10 + TSS region transcription start site region 7125
Tssr7126 1 65247409 to 65247433 24 + TSS region transcription start site region 7126
D1Mit327 1 65265339 to 65265478 139 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 327
Pth2r 1 65282056 to 65389244 107188 + protein coding gene parathyroid hormone 2 receptor
D1Mit1000 1 65309031 to 65309157 126 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 1000
Cpgi334 1 65311225 to 65311764 539 CpG island CpG island 334
Tssr7127 1 65311453 to 65311457 4 + TSS region transcription start site region 7127
Gm28927 1 65420850 to 65421121 271 - pseudogene predicted gene 28927
Gm28926 1 65421124 to 65421803 679 - pseudogene predicted gene 28926
Gm28925 1 65421770 to 65421937 167 - pseudogene predicted gene 28925
Gm28923 1 65438664 to 65438985 321 - pseudogene predicted gene 28923
Gm28922 1 65470201 to 65470508 307 - pseudogene predicted gene 28922
Gm28728 1 65523671 to 65524075 404 - pseudogene predicted gene 28728
Gm5255 1 65550467 to 65551173 706 - pseudogene predicted gene 5255
Gm8805 1 65552682 to 65552994 312 + pseudogene predicted gene 8805
Vas1 1 65849847 to 65850051 204 QTL autoimmune vasitis resistance 1
Bbaa11 1 65849847 to 65850051 204 QTL B.burgdorferi-associated arthritis 11
D1Mit76 1 65849847 to 65850051 204 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 76
Cia15 1 65849847 to 88568379 22718532 QTL collagen induced arthritis QTL 15
D1Mit156 1 65853186 to 65853326 140 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 156
Cdcs2 1 65853186 to 65853326 140 QTL cytokine deficiency colitis susceptibility 2
Tssr7128 1 65926519 to 65926523 4 + TSS region transcription start site region 7128
Crygf 1 65926522 to 65928304 1782 + protein coding gene crystallin, gamma F
Tssr104 1 65928211 to 65928220 9 + TSS region transcription start site region 104
D1Mit299 1 65964837 to 65964959 122 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 299