Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:64177790-64887815

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67 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm35880 1 64121535 to 64242198 120663 + lncRNA gene predicted gene, 35880
Gm28981 1 64185991 to 64303043 117052 - lincRNA gene predicted gene 28981
Tssr7082 1 64235709 to 64235712 3 + TSS region transcription start site region 7082
Gm39654 1 64246994 to 64256156 9162 - lncRNA gene predicted gene, 39654
Gm35803 1 64279351 to 64298537 19186 + lncRNA gene predicted gene, 35803
Tssr7083 1 64295603 to 64295629 26 + TSS region transcription start site region 7083
Tssr7084 1 64301783 to 64301800 17 + TSS region transcription start site region 7084
Tssr7085 1 64301829 to 64301861 32 + TSS region transcription start site region 7085
Tssr11916 1 64302951 to 64302962 11 - TSS region transcription start site region 11916
Tssr11917 1 64302980 to 64302990 10 - TSS region transcription start site region 11917
Tssr11918 1 64303050 to 64303065 15 - TSS region transcription start site region 11918
Tssr7086 1 64303185 to 64303217 32 + TSS region transcription start site region 7086
Tssr11919 1 64305449 to 64305472 23 - TSS region transcription start site region 11919
Cpgi324 1 64308503 to 64308934 431 CpG island CpG island 324
D1Mit125 1 64310735 to 64310854 119 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 125
Gct7 1 64310735 to 64310854 119 QTL granulosa cell tumorigenesis 7
Gm25748 1 64396334 to 64396403 69 + miRNA gene predicted gene, 25748
Gm28980 1 64454359 to 64454577 218 - pseudogene predicted gene 28980
Gm36148 1 64516797 to 64521354 4557 + lncRNA gene predicted gene, 36148
Tssr11920 1 64527783 to 64527788 5 - TSS region transcription start site region 11920
Tssr11921 1 64528321 to 64528326 5 - TSS region transcription start site region 11921
Cpgi325 1 64531890 to 64533758 1868 CpG island CpG island 325
Tssr7087 1 64532052 to 64532070 18 + TSS region transcription start site region 7087
Tssr11922 1 64532403 to 64532411 8 - TSS region transcription start site region 11922
Tssr11923 1 64532420 to 64532439 19 - TSS region transcription start site region 11923
Tssr7088 1 64532571 to 64532594 23 + TSS region transcription start site region 7088
Tssr7089 1 64532610 to 64532620 10 + TSS region transcription start site region 7089
Creb1 1 64532645 to 64604548 71903 + protein coding gene cAMP responsive element binding protein 1
Tssr98 1 64532671 to 64532720 49 - TSS region transcription start site region 98
Tssr7090 1 64532790 to 64532815 25 + TSS region transcription start site region 7090
Tssr7091 1 64532820 to 64532859 39 + TSS region transcription start site region 7091
Tssr11924 1 64532862 to 64532903 41 - TSS region transcription start site region 11924
Tssr7092 1 64532866 to 64532877 11 + TSS region transcription start site region 7092
Tssr7093 1 64532891 to 64532900 9 + TSS region transcription start site region 7093
Tssr7094 1 64532981 to 64532996 15 + TSS region transcription start site region 7094
Tssr7095 1 64533126 to 64533145 19 + TSS region transcription start site region 7095
Mettl21a 1 64606473 to 64617242 10769 - protein coding gene methyltransferase like 21A
Cpgi326 1 64616830 to 64617870 1040 CpG island CpG island 326
Tssr11925 1 64617153 to 64617238 85 - TSS region transcription start site region 11925
Gm28982 1 64617784 to 64626033 8249 + lincRNA gene predicted gene 28982
BC019684 1 64620524 to 64622772 2248 unclassified gene cDNA sequence BC019684
Gm29152 1 64649935 to 64652756 2821 + lincRNA gene predicted gene 29152
2810408I11Rik 1 64679871 to 64690659 10788 - lncRNA gene RIKEN cDNA 2810408I11 gene
Cpgi327 1 64690211 to 64691697 1486 CpG island CpG island 327
Tssr7096 1 64690366 to 64690371 5 + TSS region transcription start site region 7096
Tssr7097 1 64690443 to 64690467 24 + TSS region transcription start site region 7097
Tssr11926 1 64690578 to 64690587 9 - TSS region transcription start site region 11926
Tssr11927 1 64690618 to 64690638 20 - TSS region transcription start site region 11927
Tssr11928 1 64690650 to 64690666 16 - TSS region transcription start site region 11928
Tssr7098 1 64690791 to 64690803 12 + TSS region transcription start site region 7098
Tssr7099 1 64690867 to 64690872 5 + TSS region transcription start site region 7099
Tssr7100 1 64690913 to 64690933 20 + TSS region transcription start site region 7100
Tssr11929 1 64691036 to 64691068 32 - TSS region transcription start site region 11929
Ccnyl1 1 64691041 to 64725646 34605 + protein coding gene cyclin Y-like 1
Fzd5 1 64730558 to 64737750 7192 - protein coding gene frizzled class receptor 5
Tssr11930 1 64734391 to 64734396 5 - TSS region transcription start site region 11930
Cpgi328 1 64734765 to 64738388 3623 CpG island CpG island 328
Gm38058 1 64736240 to 64740607 4367 + protein coding gene predicted gene, 38058
Tssr11931 1 64737520 to 64737541 21 - TSS region transcription start site region 11931
Tssr11932 1 64737595 to 64737612 17 - TSS region transcription start site region 11932
Tssr11933 1 64737708 to 64737726 18 - TSS region transcription start site region 11933
Tssr11934 1 64737735 to 64737756 21 - TSS region transcription start site region 11934
Plekhm3 1 64789120 to 64956824 167704 - protein coding gene pleckstrin homology domain containing, family M, member 3
Gm18633 1 64799128 to 64800123 995 + pseudogene predicted gene, 18633
Tssr11935 1 64812966 to 64812993 27 - TSS region transcription start site region 11935
Tssr11936 1 64816675 to 64816690 15 - TSS region transcription start site region 11936
D1Mit325 1 64854711 to 64854881 170 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 325