Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:64053185-64553217

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60 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Klf7 1 64029447 to 64122282 92835 - protein coding gene Kruppel-like factor 7 (ubiquitous)
Tssr7077 1 64053711 to 64053716 5 + TSS region transcription start site region 7077
Gm13748 1 64078654 to 64090782 12128 + antisense lncRNA gene predicted gene 13748
Cpgi322 1 64078751 to 64079062 311 CpG island CpG island 322
Tssr11904 1 64078973 to 64078989 16 - TSS region transcription start site region 11904
Tssr7078 1 64088190 to 64088197 7 + TSS region transcription start site region 7078
D1Dcr54 1 64094216 to 64094311 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 54
Tssr11905 1 64107188 to 64107193 5 - TSS region transcription start site region 11905
D530037H12Rik 1 64114173 to 64118225 4052 unclassified gene RIKEN cDNA D530037H12 gene
Tssr11906 1 64120976 to 64121044 68 - TSS region transcription start site region 11906
Tssr11907 1 64121191 to 64121203 12 - TSS region transcription start site region 11907
Tssr11908 1 64121237 to 64121252 15 - TSS region transcription start site region 11908
Cpgi323 1 64121256 to 64122553 1297 CpG island CpG island 323
Tssr11909 1 64121277 to 64121312 35 - TSS region transcription start site region 11909
Tssr11910 1 64121315 to 64121324 9 - TSS region transcription start site region 11910
Tssr11911 1 64121371 to 64121382 11 - TSS region transcription start site region 11911
Tssr11912 1 64121398 to 64121452 54 - TSS region transcription start site region 11912
Tssr11913 1 64121456 to 64121463 7 - TSS region transcription start site region 11913
Gm35880 1 64121535 to 64242198 120663 + lncRNA gene predicted gene, 35880
Tssr11914 1 64121654 to 64121676 22 - TSS region transcription start site region 11914
Tssr7079 1 64121850 to 64121866 16 + TSS region transcription start site region 7079
Tssr7080 1 64121885 to 64121903 18 + TSS region transcription start site region 7080
Tssr11915 1 64122256 to 64122321 65 - TSS region transcription start site region 11915
Tssr7081 1 64150125 to 64150126 1 + TSS region transcription start site region 7081
Gm13750 1 64150201 to 64150665 464 + pseudogene predicted gene 13750
Gm28981 1 64185991 to 64303043 117052 - lincRNA gene predicted gene 28981
Tssr7082 1 64235709 to 64235712 3 + TSS region transcription start site region 7082
Gm39654 1 64246994 to 64256156 9162 - lncRNA gene predicted gene, 39654
Gm35803 1 64279351 to 64298537 19186 + lncRNA gene predicted gene, 35803
Tssr7083 1 64295603 to 64295629 26 + TSS region transcription start site region 7083
Tssr7084 1 64301783 to 64301800 17 + TSS region transcription start site region 7084
Tssr7085 1 64301829 to 64301861 32 + TSS region transcription start site region 7085
Tssr11916 1 64302951 to 64302962 11 - TSS region transcription start site region 11916
Tssr11917 1 64302980 to 64302990 10 - TSS region transcription start site region 11917
Tssr11918 1 64303050 to 64303065 15 - TSS region transcription start site region 11918
Tssr7086 1 64303185 to 64303217 32 + TSS region transcription start site region 7086
Tssr11919 1 64305449 to 64305472 23 - TSS region transcription start site region 11919
Cpgi324 1 64308503 to 64308934 431 CpG island CpG island 324
D1Mit125 1 64310735 to 64310854 119 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 125
Gct7 1 64310735 to 64310854 119 QTL granulosa cell tumorigenesis 7
Gm25748 1 64396334 to 64396403 69 + miRNA gene predicted gene, 25748
Gm28980 1 64454359 to 64454577 218 - pseudogene predicted gene 28980
Gm36148 1 64516797 to 64521354 4557 + lncRNA gene predicted gene, 36148
Tssr11920 1 64527783 to 64527788 5 - TSS region transcription start site region 11920
Tssr11921 1 64528321 to 64528326 5 - TSS region transcription start site region 11921
Cpgi325 1 64531890 to 64533758 1868 CpG island CpG island 325
Tssr7087 1 64532052 to 64532070 18 + TSS region transcription start site region 7087
Tssr11922 1 64532403 to 64532411 8 - TSS region transcription start site region 11922
Tssr11923 1 64532420 to 64532439 19 - TSS region transcription start site region 11923
Tssr7088 1 64532571 to 64532594 23 + TSS region transcription start site region 7088
Tssr7089 1 64532610 to 64532620 10 + TSS region transcription start site region 7089
Creb1 1 64532645 to 64604548 71903 + protein coding gene cAMP responsive element binding protein 1
Tssr98 1 64532671 to 64532720 49 - TSS region transcription start site region 98
Tssr7090 1 64532790 to 64532815 25 + TSS region transcription start site region 7090
Tssr7091 1 64532820 to 64532859 39 + TSS region transcription start site region 7091
Tssr11924 1 64532862 to 64532903 41 - TSS region transcription start site region 11924
Tssr7092 1 64532866 to 64532877 11 + TSS region transcription start site region 7092
Tssr7093 1 64532891 to 64532900 9 + TSS region transcription start site region 7093
Tssr7094 1 64532981 to 64532996 15 + TSS region transcription start site region 7094
Tssr7095 1 64533126 to 64533145 19 + TSS region transcription start site region 7095