Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:63570603-65020629

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152 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bswt 1 58233965 to 63884110 5650145 heritable phenotypic marker belly spot with white toes
Adam23 1 63445882 to 63596104 150222 + protein coding gene a disintegrin and metallopeptidase domain 23
Gm22281 1 63575488 to 63575590 102 - snRNA gene predicted gene, 22281
Tssr7075 1 63595815 to 63595820 5 + TSS region transcription start site region 7075
Cpgi319 1 63614319 to 63614700 381 CpG island CpG island 319
Gm39653 1 63615968 to 63620819 4851 + protein coding gene predicted gene, 39653
Dytn 1 63622851 to 63686927 64076 - protein coding gene dystrotelin
Cpgi320 1 63664687 to 63664867 180 CpG island CpG island 320
Gm12748 1 63671468 to 63671971 503 + pseudogene predicted gene 12748
Tssr11892 1 63686904 to 63686917 13 - TSS region transcription start site region 11892
D1Mit466 1 63695853 to 63695997 144 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-466
Mdh1b 1 63698827 to 63730318 31491 - protein coding gene malate dehydrogenase 1B, NAD (soluble)
Tssr11893 1 63730306 to 63730342 36 - TSS region transcription start site region 11893
Cpgi321 1 63730329 to 63730878 549 CpG island CpG island 321
Tssr11894 1 63730346 to 63730354 8 - TSS region transcription start site region 11894
Fastkd2 1 63730599 to 63753385 22786 + protein coding gene FAST kinase domains 2
Tssr7076 1 63730616 to 63730657 41 + TSS region transcription start site region 7076
4933402D24Rik 1 63754909 to 63769267 14358 - protein coding gene RIKEN cDNA 4933402D24 gene
Yaa2 1 63815531 to 63815680 149 QTL Y-linked autoimmune acceleration QTL 2
D1Mit5.1 1 63815531 to 63815680 149 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 5.1
Sle7 1 63815531 to 63815680 149 QTL systematic lupus erythematosus susceptibility 7
Gm13751 1 63844827 to 63845578 751 - pseudogene predicted gene 13751
D1Mit300 1 63880843 to 63880959 116 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 300
D1Mit480 1 63883943 to 63884110 167 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 480
Gm13754 1 63917848 to 63935932 18084 + pseudogene predicted gene 13754
Gm13749 1 63964727 to 63968999 4272 + lincRNA gene predicted gene 13749
Klf7 1 64029447 to 64122282 92835 - protein coding gene Kruppel-like factor 7 (ubiquitous)
Gm26649 1 64029463 to 64032927 3464 + lincRNA gene predicted gene, 26649
Tssr11895 1 64030165 to 64030176 11 - TSS region transcription start site region 11895
Tssr11896 1 64030183 to 64030198 15 - TSS region transcription start site region 11896
Tssr11897 1 64030263 to 64030273 10 - TSS region transcription start site region 11897
Tssr11898 1 64030289 to 64030302 13 - TSS region transcription start site region 11898
Tssr11899 1 64030361 to 64030381 20 - TSS region transcription start site region 11899
Tssr11900 1 64033532 to 64033552 20 - TSS region transcription start site region 11900
Tssr11901 1 64033847 to 64033863 16 - TSS region transcription start site region 11901
Tssr11902 1 64035742 to 64035767 25 - TSS region transcription start site region 11902
Tssr11903 1 64042329 to 64042350 21 - TSS region transcription start site region 11903
Mir6899 1 64042438 to 64042501 63 - miRNA gene microRNA 6899
Tssr7077 1 64053711 to 64053716 5 + TSS region transcription start site region 7077
Gm13748 1 64078654 to 64090782 12128 + antisense lncRNA gene predicted gene 13748
Cpgi322 1 64078751 to 64079062 311 CpG island CpG island 322
Tssr11904 1 64078973 to 64078989 16 - TSS region transcription start site region 11904
Tssr7078 1 64088190 to 64088197 7 + TSS region transcription start site region 7078
D1Dcr54 1 64094216 to 64094311 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 54
Tssr11905 1 64107188 to 64107193 5 - TSS region transcription start site region 11905
D530037H12Rik 1 64114173 to 64118225 4052 unclassified gene RIKEN cDNA D530037H12 gene
Tssr11906 1 64120976 to 64121044 68 - TSS region transcription start site region 11906
Tssr11907 1 64121191 to 64121203 12 - TSS region transcription start site region 11907
Tssr11908 1 64121237 to 64121252 15 - TSS region transcription start site region 11908
Cpgi323 1 64121256 to 64122553 1297 CpG island CpG island 323
Tssr11909 1 64121277 to 64121312 35 - TSS region transcription start site region 11909
Tssr11910 1 64121315 to 64121324 9 - TSS region transcription start site region 11910
Tssr11911 1 64121371 to 64121382 11 - TSS region transcription start site region 11911
Tssr11912 1 64121398 to 64121452 54 - TSS region transcription start site region 11912
Tssr11913 1 64121456 to 64121463 7 - TSS region transcription start site region 11913
Gm35880 1 64121535 to 64242198 120663 + lncRNA gene predicted gene, 35880
Tssr11914 1 64121654 to 64121676 22 - TSS region transcription start site region 11914
Tssr7079 1 64121850 to 64121866 16 + TSS region transcription start site region 7079
Tssr7080 1 64121885 to 64121903 18 + TSS region transcription start site region 7080
Tssr11915 1 64122256 to 64122321 65 - TSS region transcription start site region 11915
Tssr7081 1 64150125 to 64150126 1 + TSS region transcription start site region 7081
Gm13750 1 64150201 to 64150665 464 + pseudogene predicted gene 13750
Gm28981 1 64185991 to 64303043 117052 - lincRNA gene predicted gene 28981
Tssr7082 1 64235709 to 64235712 3 + TSS region transcription start site region 7082
Gm39654 1 64246994 to 64256156 9162 - lncRNA gene predicted gene, 39654
Gm35803 1 64279351 to 64298537 19186 + lncRNA gene predicted gene, 35803
Tssr7083 1 64295603 to 64295629 26 + TSS region transcription start site region 7083
Tssr7084 1 64301783 to 64301800 17 + TSS region transcription start site region 7084
Tssr7085 1 64301829 to 64301861 32 + TSS region transcription start site region 7085
Tssr11916 1 64302951 to 64302962 11 - TSS region transcription start site region 11916
Tssr11917 1 64302980 to 64302990 10 - TSS region transcription start site region 11917
Tssr11918 1 64303050 to 64303065 15 - TSS region transcription start site region 11918
Tssr7086 1 64303185 to 64303217 32 + TSS region transcription start site region 7086
Tssr11919 1 64305449 to 64305472 23 - TSS region transcription start site region 11919
Cpgi324 1 64308503 to 64308934 431 CpG island CpG island 324
D1Mit125 1 64310735 to 64310854 119 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 125
Gct7 1 64310735 to 64310854 119 QTL granulosa cell tumorigenesis 7
Gm25748 1 64396334 to 64396403 69 + miRNA gene predicted gene, 25748
Gm28980 1 64454359 to 64454577 218 - pseudogene predicted gene 28980
Gm36148 1 64516797 to 64521354 4557 + lncRNA gene predicted gene, 36148
Tssr11920 1 64527783 to 64527788 5 - TSS region transcription start site region 11920
Tssr11921 1 64528321 to 64528326 5 - TSS region transcription start site region 11921
Cpgi325 1 64531890 to 64533758 1868 CpG island CpG island 325
Tssr7087 1 64532052 to 64532070 18 + TSS region transcription start site region 7087
Tssr11922 1 64532403 to 64532411 8 - TSS region transcription start site region 11922
Tssr11923 1 64532420 to 64532439 19 - TSS region transcription start site region 11923
Tssr7088 1 64532571 to 64532594 23 + TSS region transcription start site region 7088
Tssr7089 1 64532610 to 64532620 10 + TSS region transcription start site region 7089
Creb1 1 64532645 to 64604548 71903 + protein coding gene cAMP responsive element binding protein 1
Tssr98 1 64532671 to 64532720 49 - TSS region transcription start site region 98
Tssr7090 1 64532790 to 64532815 25 + TSS region transcription start site region 7090
Tssr7091 1 64532820 to 64532859 39 + TSS region transcription start site region 7091
Tssr11924 1 64532862 to 64532903 41 - TSS region transcription start site region 11924
Tssr7092 1 64532866 to 64532877 11 + TSS region transcription start site region 7092
Tssr7093 1 64532891 to 64532900 9 + TSS region transcription start site region 7093
Tssr7094 1 64532981 to 64532996 15 + TSS region transcription start site region 7094
Tssr7095 1 64533126 to 64533145 19 + TSS region transcription start site region 7095
Mettl21a 1 64606473 to 64617242 10769 - protein coding gene methyltransferase like 21A
Cpgi326 1 64616830 to 64617870 1040 CpG island CpG island 326
Tssr11925 1 64617153 to 64617238 85 - TSS region transcription start site region 11925
Gm28982 1 64617784 to 64626033 8249 + lincRNA gene predicted gene 28982
BC019684 1 64620524 to 64622772 2248 unclassified gene cDNA sequence BC019684
Gm29152 1 64649935 to 64652756 2821 + lincRNA gene predicted gene 29152
2810408I11Rik 1 64679871 to 64690659 10788 - lncRNA gene RIKEN cDNA 2810408I11 gene
Cpgi327 1 64690211 to 64691697 1486 CpG island CpG island 327
Tssr7096 1 64690366 to 64690371 5 + TSS region transcription start site region 7096
Tssr7097 1 64690443 to 64690467 24 + TSS region transcription start site region 7097
Tssr11926 1 64690578 to 64690587 9 - TSS region transcription start site region 11926
Tssr11927 1 64690618 to 64690638 20 - TSS region transcription start site region 11927
Tssr11928 1 64690650 to 64690666 16 - TSS region transcription start site region 11928
Tssr7098 1 64690791 to 64690803 12 + TSS region transcription start site region 7098
Tssr7099 1 64690867 to 64690872 5 + TSS region transcription start site region 7099
Tssr7100 1 64690913 to 64690933 20 + TSS region transcription start site region 7100
Tssr11929 1 64691036 to 64691068 32 - TSS region transcription start site region 11929
Ccnyl1 1 64691041 to 64725646 34605 + protein coding gene cyclin Y-like 1
Fzd5 1 64730558 to 64737750 7192 - protein coding gene frizzled class receptor 5
Tssr11930 1 64734391 to 64734396 5 - TSS region transcription start site region 11930
Cpgi328 1 64734765 to 64738388 3623 CpG island CpG island 328
Gm38058 1 64736240 to 64740607 4367 + protein coding gene predicted gene, 38058
Tssr11931 1 64737520 to 64737541 21 - TSS region transcription start site region 11931
Tssr11932 1 64737595 to 64737612 17 - TSS region transcription start site region 11932
Tssr11933 1 64737708 to 64737726 18 - TSS region transcription start site region 11933
Tssr11934 1 64737735 to 64737756 21 - TSS region transcription start site region 11934
Plekhm3 1 64789120 to 64956824 167704 - protein coding gene pleckstrin homology domain containing, family M, member 3
Gm18633 1 64799128 to 64800123 995 + pseudogene predicted gene, 18633
Tssr11935 1 64812966 to 64812993 27 - TSS region transcription start site region 11935
Tssr11936 1 64816675 to 64816690 15 - TSS region transcription start site region 11936
D1Mit325 1 64854711 to 64854881 170 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 325
Tssr11937 1 64924943 to 64924950 7 - TSS region transcription start site region 11937
Tssr11938 1 64927499 to 64927540 41 - TSS region transcription start site region 11938
Tssr7101 1 64927712 to 64927723 11 + TSS region transcription start site region 7101
Tssr7102 1 64927726 to 64927743 17 + TSS region transcription start site region 7102
Tssr11939 1 64928061 to 64928066 5 - TSS region transcription start site region 11939
Tssr11940 1 64928076 to 64928096 20 - TSS region transcription start site region 11940
Tssr11941 1 64928112 to 64928115 3 - TSS region transcription start site region 11941
Tssr11942 1 64928642 to 64928646 4 - TSS region transcription start site region 11942
Rpl31-ps24 1 64934401 to 64934779 378 + pseudogene ribosomal protein L31, pseudogene 24
Tssr11943 1 64937808 to 64937821 13 - TSS region transcription start site region 11943
Tssr11944 1 64937824 to 64937836 12 - TSS region transcription start site region 11944
Cpgi329 1 64956425 to 64956887 462 CpG island CpG island 329
Tssr11945 1 64956711 to 64956725 14 - TSS region transcription start site region 11945
Tssr11946 1 64956731 to 64956782 51 - TSS region transcription start site region 11946
Tssr11947 1 64956807 to 64956818 11 - TSS region transcription start site region 11947
Tssr11948 1 64956823 to 64956835 12 - TSS region transcription start site region 11948
Rpl10a-ps1 1 64993951 to 64994604 653 - pseudogene ribosomal protein L10A, pseudogene 1
Tssr7103 1 64994271 to 64994311 40 + TSS region transcription start site region 7103
Tssr11949 1 64994633 to 64994640 7 - TSS region transcription start site region 11949
Gm24788 1 65001307 to 65001462 155 - snRNA gene predicted gene, 24788
Akr1cl 1 65013078 to 65032759 19681 - protein coding gene aldo-keto reductase family 1, member C-like
Tssr11950 1 65018425 to 65018432 7 - TSS region transcription start site region 11950
Ssial1 1 153681816 to 63880843 -89800973 QTL susceptibility to sialadenitis 1
Hcs9 1 189571420 to 63815531 -125755889 QTL hepatocarcinogenesis susceptibility 9