Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:63314909-64209267

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bswt 1 58233965 to 63884110 5650145 heritable phenotypic marker belly spot with white toes
Tssr7066 1 63323944 to 63323962 18 + TSS region transcription start site region 7066
D1Mit177 1 63356619 to 63356756 137 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 177
Gm11606 1 63357434 to 63358050 616 - pseudogene predicted gene 11606
Gm11605 1 63364720 to 63365365 645 - pseudogene predicted gene 11605
Gm35393 1 63431305 to 63436457 5152 - lncRNA gene predicted gene, 35393
Tssr11891 1 63442243 to 63442257 14 - TSS region transcription start site region 11891
Tssr7067 1 63442494 to 63442499 5 + TSS region transcription start site region 7067
Cpgi318 1 63445272 to 63446854 1582 CpG island CpG island 318
Tssr7068 1 63445715 to 63445765 50 + TSS region transcription start site region 7068
Tssr7069 1 63445842 to 63445943 101 + TSS region transcription start site region 7069
Adam23 1 63445882 to 63596104 150222 + protein coding gene a disintegrin and metallopeptidase domain 23
Tssr7070 1 63445948 to 63445980 32 + TSS region transcription start site region 7070
Tssr7071 1 63446006 to 63446020 14 + TSS region transcription start site region 7071
Tssr7072 1 63446085 to 63446090 5 + TSS region transcription start site region 7072
Tssr7073 1 63446175 to 63446185 10 + TSS region transcription start site region 7073
Tssr7074 1 63528759 to 63528768 9 + TSS region transcription start site region 7074
Gm22281 1 63575488 to 63575590 102 - snRNA gene predicted gene, 22281
Tssr7075 1 63595815 to 63595820 5 + TSS region transcription start site region 7075
Cpgi319 1 63614319 to 63614700 381 CpG island CpG island 319
Gm39653 1 63615968 to 63620819 4851 + protein coding gene predicted gene, 39653
Dytn 1 63622851 to 63686927 64076 - protein coding gene dystrotelin
Cpgi320 1 63664687 to 63664867 180 CpG island CpG island 320
Gm12748 1 63671468 to 63671971 503 + pseudogene predicted gene 12748
Tssr11892 1 63686904 to 63686917 13 - TSS region transcription start site region 11892
D1Mit466 1 63695853 to 63695997 144 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-466
Mdh1b 1 63698827 to 63730318 31491 - protein coding gene malate dehydrogenase 1B, NAD (soluble)
Tssr11893 1 63730306 to 63730342 36 - TSS region transcription start site region 11893
Cpgi321 1 63730329 to 63730878 549 CpG island CpG island 321
Tssr11894 1 63730346 to 63730354 8 - TSS region transcription start site region 11894
Fastkd2 1 63730599 to 63753385 22786 + protein coding gene FAST kinase domains 2
Tssr7076 1 63730616 to 63730657 41 + TSS region transcription start site region 7076
4933402D24Rik 1 63754909 to 63769267 14358 - protein coding gene RIKEN cDNA 4933402D24 gene
D1Mit5.1 1 63815531 to 63815680 149 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 5.1
Yaa2 1 63815531 to 63815680 149 QTL Y-linked autoimmune acceleration QTL 2
Sle7 1 63815531 to 63815680 149 QTL systematic lupus erythematosus susceptibility 7
Gm13751 1 63844827 to 63845578 751 - pseudogene predicted gene 13751
D1Mit300 1 63880843 to 63880959 116 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 300
D1Mit480 1 63883943 to 63884110 167 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 480
Gm13754 1 63917848 to 63935932 18084 + pseudogene predicted gene 13754
Gm13749 1 63964727 to 63968999 4272 + lincRNA gene predicted gene 13749
Klf7 1 64029447 to 64122282 92835 - protein coding gene Kruppel-like factor 7 (ubiquitous)
Gm26649 1 64029463 to 64032927 3464 + lincRNA gene predicted gene, 26649
Tssr11895 1 64030165 to 64030176 11 - TSS region transcription start site region 11895
Tssr11896 1 64030183 to 64030198 15 - TSS region transcription start site region 11896
Tssr11897 1 64030263 to 64030273 10 - TSS region transcription start site region 11897
Tssr11898 1 64030289 to 64030302 13 - TSS region transcription start site region 11898
Tssr11899 1 64030361 to 64030381 20 - TSS region transcription start site region 11899
Tssr11900 1 64033532 to 64033552 20 - TSS region transcription start site region 11900
Tssr11901 1 64033847 to 64033863 16 - TSS region transcription start site region 11901
Tssr11902 1 64035742 to 64035767 25 - TSS region transcription start site region 11902
Tssr11903 1 64042329 to 64042350 21 - TSS region transcription start site region 11903
Mir6899 1 64042438 to 64042501 63 - miRNA gene microRNA 6899
Tssr7077 1 64053711 to 64053716 5 + TSS region transcription start site region 7077
Gm13748 1 64078654 to 64090782 12128 + antisense lncRNA gene predicted gene 13748
Cpgi322 1 64078751 to 64079062 311 CpG island CpG island 322
Tssr11904 1 64078973 to 64078989 16 - TSS region transcription start site region 11904
Tssr7078 1 64088190 to 64088197 7 + TSS region transcription start site region 7078
D1Dcr54 1 64094216 to 64094311 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 54
Tssr11905 1 64107188 to 64107193 5 - TSS region transcription start site region 11905
D530037H12Rik 1 64114173 to 64118225 4052 unclassified gene RIKEN cDNA D530037H12 gene
Tssr11906 1 64120976 to 64121044 68 - TSS region transcription start site region 11906
Tssr11907 1 64121191 to 64121203 12 - TSS region transcription start site region 11907
Tssr11908 1 64121237 to 64121252 15 - TSS region transcription start site region 11908
Cpgi323 1 64121256 to 64122553 1297 CpG island CpG island 323
Tssr11909 1 64121277 to 64121312 35 - TSS region transcription start site region 11909
Tssr11910 1 64121315 to 64121324 9 - TSS region transcription start site region 11910
Tssr11911 1 64121371 to 64121382 11 - TSS region transcription start site region 11911
Tssr11912 1 64121398 to 64121452 54 - TSS region transcription start site region 11912
Tssr11913 1 64121456 to 64121463 7 - TSS region transcription start site region 11913
Gm35880 1 64121535 to 64242198 120663 + lncRNA gene predicted gene, 35880
Tssr11914 1 64121654 to 64121676 22 - TSS region transcription start site region 11914
Tssr7079 1 64121850 to 64121866 16 + TSS region transcription start site region 7079
Tssr7080 1 64121885 to 64121903 18 + TSS region transcription start site region 7080
Tssr11915 1 64122256 to 64122321 65 - TSS region transcription start site region 11915
Tssr7081 1 64150125 to 64150126 1 + TSS region transcription start site region 7081
Gm13750 1 64150201 to 64150665 464 + pseudogene predicted gene 13750
Gm28981 1 64185991 to 64303043 117052 - lincRNA gene predicted gene 28981
Ssial1 1 153681816 to 63880843 -89800973 QTL susceptibility to sialadenitis 1
Hcs9 1 189571420 to 63815531 -125755889 QTL hepatocarcinogenesis susceptibility 9