Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:63171006-63721020

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ndufs1 1 63143592 to 63176822 33230 - protein coding gene NADH:ubiquinone oxidoreductase core subunit S1
Cpgi313 1 63176462 to 63177546 1084 CpG island CpG island 313
Tssr11882 1 63176653 to 63176707 54 - TSS region transcription start site region 11882
Tssr11883 1 63176805 to 63176817 12 - TSS region transcription start site region 11883
Tssr7054 1 63176818 to 63176919 101 + TSS region transcription start site region 7054
Eef1b2 1 63176831 to 63180486 3655 + protein coding gene eukaryotic translation elongation factor 1 beta 2
Tssr7055 1 63177051 to 63177054 3 + TSS region transcription start site region 7055
Tssr7056 1 63177091 to 63177096 5 + TSS region transcription start site region 7056
Tssr7057 1 63177119 to 63177145 26 + TSS region transcription start site region 7057
Tssr7058 1 63177746 to 63177760 14 + TSS region transcription start site region 7058
Gm27390 1 63177983 to 63178158 175 + unclassified non-coding RNA gene predicted gene, 27390
Tssr7059 1 63178460 to 63178480 20 + TSS region transcription start site region 7059
Gm26457 1 63178686 to 63178720 34 + snoRNA gene predicted gene, 26457
Tssr11884 1 63178858 to 63178896 38 - TSS region transcription start site region 11884
Snora41 1 63179023 to 63179135 112 + snoRNA gene small nucleolar RNA, H/ACA box 41
Gpr1 1 63182691 to 63214543 31852 - protein coding gene G protein-coupled receptor 1
Gm27512 1 63198031 to 63198156 125 + miRNA gene predicted gene, 27512
Cpgi314 1 63200183 to 63200626 443 CpG island CpG island 314
Platr12 1 63200313 to 63207967 7654 + unclassified non-coding RNA gene pluripotency associated transcript 12
Tssr7060 1 63200567 to 63200578 11 + TSS region transcription start site region 7060
Tssr7061 1 63200581 to 63200592 11 + TSS region transcription start site region 7061
Tssr7062 1 63200593 to 63200641 48 + TSS region transcription start site region 7062
Tssr11885 1 63214226 to 63214244 18 - TSS region transcription start site region 11885
Tssr11886 1 63214247 to 63214264 17 - TSS region transcription start site region 11886
Tssr11887 1 63214275 to 63214286 11 - TSS region transcription start site region 11887
Tssr11888 1 63214309 to 63214322 13 - TSS region transcription start site region 11888
1700039I01Rik 1 63248021 to 63248499 478 - lncRNA gene RIKEN cDNA 1700039I01 gene
Cpgi315 1 63248104 to 63248795 691 CpG island CpG island 315
Gm11608 1 63266848 to 63273120 6272 - lincRNA gene predicted gene 11608
Cpgi316 1 63272786 to 63274030 1244 CpG island CpG island 316
Tssr11889 1 63273096 to 63273111 15 - TSS region transcription start site region 11889
Tssr11890 1 63273112 to 63273136 24 - TSS region transcription start site region 11890
Tssr7063 1 63273203 to 63273230 27 + TSS region transcription start site region 7063
Gm24513 1 63273226 to 63273363 137 - miRNA gene predicted gene, 24513
Tssr7064 1 63273261 to 63273275 14 + TSS region transcription start site region 7064
Zdbf2 1 63273265 to 63314576 41311 + protein coding gene zinc finger, DBF-type containing 2
Tssr7065 1 63296207 to 63296212 5 + TSS region transcription start site region 7065
Gm23448 1 63300280 to 63300383 103 - snRNA gene predicted gene, 23448
Cpgi317 1 63309067 to 63309968 901 CpG island CpG island 317
Tssr7066 1 63323944 to 63323962 18 + TSS region transcription start site region 7066
D1Mit177 1 63356619 to 63356756 137 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 177
Gm11606 1 63357434 to 63358050 616 - pseudogene predicted gene 11606
Gm11605 1 63364720 to 63365365 645 - pseudogene predicted gene 11605
Gm35393 1 63431305 to 63436457 5152 - lncRNA gene predicted gene, 35393
Tssr11891 1 63442243 to 63442257 14 - TSS region transcription start site region 11891
Tssr7067 1 63442494 to 63442499 5 + TSS region transcription start site region 7067
Cpgi318 1 63445272 to 63446854 1582 CpG island CpG island 318
Tssr7068 1 63445715 to 63445765 50 + TSS region transcription start site region 7068
Tssr7069 1 63445842 to 63445943 101 + TSS region transcription start site region 7069
Adam23 1 63445882 to 63596104 150222 + protein coding gene a disintegrin and metallopeptidase domain 23
Tssr7070 1 63445948 to 63445980 32 + TSS region transcription start site region 7070
Tssr7071 1 63446006 to 63446020 14 + TSS region transcription start site region 7071
Tssr7072 1 63446085 to 63446090 5 + TSS region transcription start site region 7072
Tssr7073 1 63446175 to 63446185 10 + TSS region transcription start site region 7073
Tssr7074 1 63528759 to 63528768 9 + TSS region transcription start site region 7074
Gm22281 1 63575488 to 63575590 102 - snRNA gene predicted gene, 22281
Tssr7075 1 63595815 to 63595820 5 + TSS region transcription start site region 7075
Cpgi319 1 63614319 to 63614700 381 CpG island CpG island 319
Gm39653 1 63615968 to 63620819 4851 + protein coding gene predicted gene, 39653
Dytn 1 63622851 to 63686927 64076 - protein coding gene dystrotelin
Cpgi320 1 63664687 to 63664867 180 CpG island CpG island 320
Gm12748 1 63671468 to 63671971 503 + pseudogene predicted gene 12748
Tssr11892 1 63686904 to 63686917 13 - TSS region transcription start site region 11892
D1Mit466 1 63695853 to 63695997 144 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-466
Mdh1b 1 63698827 to 63730318 31491 - protein coding gene malate dehydrogenase 1B, NAD (soluble)